Wall clock time and date at job start Tue Mar 31 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37980 * 119.93139 * 2 1 4 4 C 1.39557 * 119.85179 * 180.32026 * 3 2 1 5 5 C 1.47846 * 120.14085 * 179.67488 * 4 3 2 6 6 O 1.21553 * 120.00154 * 359.72357 * 5 4 3 7 7 N 1.34777 * 119.99557 * 179.72056 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72375 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99770 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00513 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99651 * 179.97438 * 12 10 9 15 15 H 1.48491 * 109.47115 * 89.99974 * 14 12 10 16 16 H 1.48509 * 109.46780 * 210.00159 * 14 12 10 17 17 H 1.48497 * 109.46888 * 329.99916 * 14 12 10 18 18 C 1.39591 * 119.71135 * 359.39599 * 4 3 2 19 19 C 1.37931 * 119.85479 * 0.28475 * 18 4 3 20 20 N 1.48019 * 119.92949 * 179.97438 * 19 18 4 21 21 O 1.21798 * 119.99657 * 359.97438 * 20 19 18 22 22 O 1.21800 * 120.00277 * 179.97438 * 20 19 18 23 23 C 1.38340 * 119.92537 * 179.69696 * 2 1 3 24 24 H 1.08994 * 109.47194 * 270.30529 * 1 2 3 25 25 H 1.09003 * 109.47130 * 30.30302 * 1 2 3 26 26 H 1.09001 * 109.47166 * 150.30432 * 1 2 3 27 27 H 1.08001 * 120.07403 * 359.97438 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 29 29 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 30 30 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 31 31 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 32 32 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 33 33 H 0.96999 * 120.00239 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.07290 * 180.25381 * 18 4 3 35 35 H 1.08004 * 119.85555 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5910 1.1938 -0.0068 5 6 4.3351 2.4714 -0.0141 6 8 3.7314 3.5264 -0.0193 7 7 5.6829 2.4661 -0.0149 8 6 6.4202 3.7319 -0.0282 9 6 7.9234 3.4466 -0.0333 10 6 8.6819 4.7487 -0.0464 11 1 8.1455 5.6861 -0.0511 12 6 10.0607 4.7433 -0.0524 13 7 10.7139 3.6018 -0.0473 14 14 11.0009 6.3574 -0.0694 15 1 11.2562 6.7962 1.3260 16 1 12.2947 6.1692 -0.7737 17 1 10.1992 7.3898 -0.7742 18 6 4.2812 -0.0195 -0.0007 19 6 3.5809 -1.2078 0.0060 20 7 4.3111 -2.4953 0.0118 21 8 5.5291 -2.5046 0.0103 22 8 3.6941 -3.5454 0.0182 23 6 2.1971 -1.1989 0.0063 24 1 -0.3633 0.0055 1.0276 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3633 -0.8927 -0.5091 27 1 1.6555 2.1311 -0.0004 28 1 6.1647 1.6242 -0.0111 29 1 6.1548 4.2977 -0.9214 30 1 6.1635 4.3114 0.8585 31 1 8.1888 2.8809 0.8597 32 1 8.1802 2.8671 -0.9202 33 1 11.6839 3.5981 -0.0511 34 1 5.3612 -0.0277 -0.0018 35 1 1.6535 -2.1322 0.0117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137098386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:42 Heat of formation + Delta-G solvation = -29.453530 kcal Electronic energy + Delta-G solvation = -20367.663316 eV Core-core repulsion = 16947.508768 eV Total energy + Delta-G solvation = -3420.154548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.38500 -40.49633 -38.75004 -36.74243 -35.17420 -33.83551 -32.91364 -32.28563 -29.73462 -27.74224 -26.80396 -25.42950 -23.71986 -22.21736 -21.18882 -20.39207 -19.12083 -18.78955 -17.71264 -17.25246 -16.82214 -16.37767 -16.12222 -15.28112 -14.94872 -14.55720 -14.35308 -14.25802 -13.45369 -13.33348 -12.88507 -12.62441 -12.51181 -12.40433 -12.29410 -11.73464 -11.37655 -11.29626 -11.29059 -11.09622 -10.70442 -10.45240 -10.14464 -9.92994 -9.64244 -9.57652 -9.33052 -8.74372 -8.45471 -6.13596 -4.17470 -0.44439 0.21539 1.04143 1.13236 2.44479 3.19908 3.26785 3.33033 3.33537 3.37569 3.88159 4.04353 4.35816 4.39049 4.41814 4.47122 4.67935 4.96573 5.00067 5.07913 5.23413 5.25460 5.44440 5.54143 5.68443 5.83713 6.15799 6.19737 6.19926 6.55462 6.65394 7.41733 7.43916 7.52182 7.69037 7.83197 8.16491 8.29738 8.88038 9.47865 10.97829 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.003554 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.411005 B = 7876.146156 C = 9124.790189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.015 4.015 4 C -0.116 4.116 5 C 0.550 3.450 6 O -0.536 6.536 7 N -0.710 5.710 8 C 0.120 3.880 9 C 0.011 3.989 10 C -0.525 4.525 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.032 4.032 19 C -0.045 4.045 20 N 0.028 4.972 21 O -0.149 6.149 22 O -0.161 6.161 23 C -0.042 4.042 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.399 0.601 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.159 0.841 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 -10.066 0.141 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.034 4.034 4 C -0.120 4.120 5 C 0.334 3.666 6 O -0.415 6.415 7 N -0.360 5.360 8 C -0.001 4.001 9 C -0.027 4.027 10 C -0.563 4.563 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.052 4.052 19 C -0.127 4.127 20 N 0.548 4.452 21 O -0.367 6.367 22 O -0.377 6.377 23 C -0.061 4.061 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.174 0.826 28 H 0.234 0.766 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.177 0.823 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.129 -8.736 0.129 21.944 hybrid contribution 1.212 -0.031 0.010 1.213 sum -18.917 -8.766 0.139 20.850 Atomic orbital electron populations 1.20855 0.88692 1.04054 1.03513 1.19912 0.97549 0.91163 1.00449 1.21687 0.92751 0.99311 0.89684 1.20185 0.94472 0.93025 1.04349 1.17922 0.82945 0.87679 0.78014 1.90785 1.68518 1.31685 1.50532 1.46358 1.05356 1.12012 1.72258 1.21871 0.94270 0.82751 1.01256 1.19354 0.86901 0.98299 0.98096 1.21004 0.91263 0.92213 1.51852 0.92196 1.24998 0.97777 0.96572 0.94873 1.69948 1.07976 1.25137 1.49958 0.86502 0.79246 0.83524 0.78226 1.20527 1.21115 1.19723 1.21264 1.02254 0.89448 0.92234 1.20947 0.92650 0.83685 1.15460 1.43569 1.01349 1.02617 0.97625 1.94604 0.95114 1.94132 1.52857 1.94526 1.69414 1.20206 1.53506 1.21089 0.90908 1.00476 0.93649 0.90062 0.90269 0.90566 0.82593 0.76623 0.92013 0.92006 0.95759 0.95755 0.92718 0.82309 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.01 36.00 0.36 -0.16 16 2 C -0.09 -0.68 5.87 -104.68 -0.61 -1.30 16 3 C -0.02 -0.15 9.25 -39.18 -0.36 -0.51 16 4 C -0.12 -1.39 5.87 -104.97 -0.62 -2.01 16 5 C 0.55 8.61 7.77 -12.33 -0.10 8.51 16 6 O -0.54 -9.99 16.35 5.32 0.09 -9.90 16 7 N -0.71 -11.68 5.51 -61.25 -0.34 -12.02 16 8 C 0.12 2.42 5.61 -4.04 -0.02 2.40 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 14 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 C -0.03 -0.37 9.04 -39.19 -0.35 -0.72 16 19 C -0.04 -0.50 6.85 -80.00 -0.55 -1.04 16 20 N 0.03 0.37 4.45 33.93 0.15 0.52 16 21 O -0.15 -2.17 18.44 -29.46 -0.54 -2.71 16 22 O -0.16 -2.12 18.44 -29.46 -0.54 -2.67 16 23 C -0.04 -0.36 9.20 -39.49 -0.36 -0.72 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 26 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 27 H 0.16 1.40 7.65 -52.49 -0.40 1.00 16 28 H 0.40 5.75 6.51 -40.82 -0.27 5.48 16 29 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.16 1.74 5.95 -52.49 -0.31 1.43 16 35 H 0.16 1.03 7.60 -52.48 -0.40 0.64 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -31.59 317.11 -7.73 -39.33 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.87 Total: 0.06 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -3.17 Total: -8.40 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.55 Total: -36.53 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -1.00 Total: -15.28 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.59 -7.73 -39.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137098386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.875 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds