Wall clock time and date at job start Tue Mar 31 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37980 * 119.93139 * 2 1 4 4 C 1.39557 * 119.85179 * 180.32026 * 3 2 1 5 5 C 1.47846 * 120.14085 * 179.67488 * 4 3 2 6 6 O 1.21553 * 120.00154 * 359.72357 * 5 4 3 7 7 N 1.34777 * 119.99557 * 179.72056 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72375 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99770 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00513 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99651 * 179.97438 * 12 10 9 15 15 H 1.48491 * 109.47115 * 89.99974 * 14 12 10 16 16 H 1.48509 * 109.46780 * 210.00159 * 14 12 10 17 17 H 1.48497 * 109.46888 * 329.99916 * 14 12 10 18 18 C 1.39591 * 119.71135 * 359.39599 * 4 3 2 19 19 C 1.37931 * 119.85479 * 0.28475 * 18 4 3 20 20 N 1.48019 * 119.92949 * 179.97438 * 19 18 4 21 21 O 1.21798 * 119.99657 * 359.97438 * 20 19 18 22 22 O 1.21800 * 120.00277 * 179.97438 * 20 19 18 23 23 C 1.38340 * 119.92537 * 179.69696 * 2 1 3 24 24 H 1.08994 * 109.47194 * 270.30529 * 1 2 3 25 25 H 1.09003 * 109.47130 * 30.30302 * 1 2 3 26 26 H 1.09001 * 109.47166 * 150.30432 * 1 2 3 27 27 H 1.08001 * 120.07403 * 359.97438 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 29 29 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 30 30 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 31 31 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 32 32 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 33 33 H 0.96999 * 120.00239 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.07290 * 180.25381 * 18 4 3 35 35 H 1.08004 * 119.85555 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5910 1.1938 -0.0068 5 6 4.3351 2.4714 -0.0141 6 8 3.7314 3.5264 -0.0193 7 7 5.6829 2.4661 -0.0149 8 6 6.4202 3.7319 -0.0282 9 6 7.9234 3.4466 -0.0333 10 6 8.6819 4.7487 -0.0464 11 1 8.1455 5.6861 -0.0511 12 6 10.0607 4.7433 -0.0524 13 7 10.7139 3.6018 -0.0473 14 14 11.0009 6.3574 -0.0694 15 1 11.2562 6.7962 1.3260 16 1 12.2947 6.1692 -0.7737 17 1 10.1992 7.3898 -0.7742 18 6 4.2812 -0.0195 -0.0007 19 6 3.5809 -1.2078 0.0060 20 7 4.3111 -2.4953 0.0118 21 8 5.5291 -2.5046 0.0103 22 8 3.6941 -3.5454 0.0182 23 6 2.1971 -1.1989 0.0063 24 1 -0.3633 0.0055 1.0276 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3633 -0.8927 -0.5091 27 1 1.6555 2.1311 -0.0004 28 1 6.1647 1.6242 -0.0111 29 1 6.1548 4.2977 -0.9214 30 1 6.1635 4.3114 0.8585 31 1 8.1888 2.8809 0.8597 32 1 8.1802 2.8671 -0.9202 33 1 11.6839 3.5981 -0.0511 34 1 5.3612 -0.0277 -0.0018 35 1 1.6535 -2.1322 0.0117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137098386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:42 Heat of formation + Delta-G solvation = -48.442983 kcal Electronic energy + Delta-G solvation = -20368.486761 eV Core-core repulsion = 16947.508768 eV Total energy + Delta-G solvation = -3420.977993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.36416 -41.54807 -39.85422 -37.76441 -36.76722 -35.06111 -34.34316 -33.29652 -31.46860 -28.34634 -27.75800 -27.08861 -25.04166 -23.11438 -22.91813 -21.55676 -20.15106 -19.75200 -18.69795 -18.62208 -18.25349 -17.53179 -17.22136 -16.66978 -16.47591 -16.15741 -15.28624 -15.22445 -14.66145 -14.51199 -14.31642 -13.49449 -13.34577 -13.30665 -13.18436 -12.96054 -12.95694 -12.74984 -12.55489 -12.36043 -12.34640 -12.29976 -11.75458 -11.52351 -11.16948 -10.81333 -10.62949 -10.32378 -10.13355 -8.25419 -6.36626 -1.36719 -0.64773 0.13263 0.21080 1.41555 1.42009 1.44911 1.53376 1.95950 2.29679 2.41000 3.08225 3.09614 3.18995 3.56493 3.64413 3.70536 3.84545 4.14246 4.34396 4.43768 4.44122 4.60141 4.74256 4.79968 4.82806 4.90035 5.09993 5.10514 5.17980 5.38815 5.42320 5.53123 5.75005 6.11860 6.35353 6.38447 6.76641 6.96019 7.33177 8.86417 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.003554 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.411005 B = 7876.146156 C = 9124.790189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 C -0.009 4.009 4 C -0.129 4.129 5 C 0.554 3.446 6 O -0.567 6.567 7 N -0.712 5.712 8 C 0.140 3.860 9 C 0.019 3.981 10 C -0.547 4.547 11 H 0.062 0.938 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.264 1.264 18 C -0.035 4.035 19 C -0.056 4.056 20 N 0.030 4.970 21 O -0.202 6.202 22 O -0.142 6.142 23 C -0.027 4.027 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.165 0.835 28 H 0.408 0.592 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.266 0.734 34 H 0.153 0.847 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.030 -10.192 0.153 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C -0.028 4.028 4 C -0.133 4.133 5 C 0.341 3.659 6 O -0.448 6.448 7 N -0.362 5.362 8 C 0.017 3.983 9 C -0.018 4.018 10 C -0.585 4.585 11 H 0.081 0.919 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.790 3.210 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.055 4.055 19 C -0.139 4.139 20 N 0.547 4.453 21 O -0.407 6.407 22 O -0.365 6.365 23 C -0.046 4.046 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.183 0.817 28 H 0.244 0.756 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.171 0.829 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.511 -8.849 0.142 24.188 hybrid contribution 1.783 -0.074 0.009 1.785 sum -20.727 -8.924 0.151 22.567 Atomic orbital electron populations 1.21002 0.85723 1.05526 1.04851 1.20237 0.99245 0.89665 0.98158 1.21903 0.91622 1.00756 0.88551 1.19777 0.95202 0.91031 1.07277 1.18346 0.82283 0.88751 0.76511 1.90760 1.68933 1.33226 1.51911 1.46173 1.06014 1.11131 1.72869 1.21353 0.92144 0.84183 1.00655 1.19170 0.89362 0.96896 0.96412 1.21452 0.92046 0.93358 1.51654 0.91936 1.25897 0.98845 1.00136 0.94389 1.70064 1.08349 1.27345 1.50884 0.85428 0.77761 0.79243 0.78520 1.19766 1.20695 1.18837 1.21167 1.02183 0.89654 0.92506 1.21028 0.93484 0.82350 1.17042 1.43821 1.01230 1.03223 0.97046 1.94621 0.95978 1.94482 1.55667 1.94486 1.69133 1.20976 1.51934 1.21497 0.89648 1.02058 0.91351 0.88588 0.89327 0.88687 0.81748 0.75567 0.92623 0.92591 0.97370 0.97366 0.92536 0.82902 0.79920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.01 71.24 0.71 0.21 16 2 C -0.07 -0.84 5.87 -19.90 -0.12 -0.95 16 3 C -0.01 -0.16 9.25 22.53 0.21 0.05 16 4 C -0.13 -3.00 5.87 -20.09 -0.12 -3.11 16 5 C 0.55 17.45 7.77 86.79 0.67 18.12 16 6 O -0.57 -21.16 16.35 -3.88 -0.06 -21.22 16 7 N -0.71 -24.08 5.51 -465.96 -2.57 -26.64 16 8 C 0.14 5.79 5.61 86.38 0.48 6.27 16 9 C 0.02 0.95 5.09 29.85 0.15 1.10 16 10 C -0.55 -30.14 9.11 25.60 0.23 -29.91 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 12 C 0.01 0.35 5.46 84.65 0.46 0.81 16 13 N -0.93 -54.53 13.29 21.45 0.28 -54.24 16 14 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 C -0.04 -0.79 9.04 22.52 0.20 -0.59 16 19 C -0.06 -1.17 6.85 36.34 0.25 -0.92 16 20 N 0.03 0.77 4.45 -46.55 -0.21 0.56 16 21 O -0.20 -6.07 18.44 18.89 0.35 -5.72 16 22 O -0.14 -3.50 18.44 18.89 0.35 -3.15 16 23 C -0.03 -0.37 9.20 22.33 0.21 -0.16 16 24 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.09 0.30 8.09 -2.39 -0.02 0.28 16 26 H 0.09 0.14 8.08 -2.39 -0.02 0.12 16 27 H 0.17 2.56 7.65 -2.91 -0.02 2.54 16 28 H 0.41 12.32 6.51 -92.71 -0.60 11.71 16 29 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 34 H 0.15 3.53 5.95 -2.91 -0.02 3.52 16 35 H 0.18 1.58 7.60 -2.91 -0.02 1.56 16 Total: -1.00 -68.95 317.11 4.05 -64.90 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.53 Total: 9.25 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 3.35 Total: -9.08 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -2.49 Total: -80.33 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: 0.63 Total: -30.09 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -68.95 4.05 -64.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137098386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.457 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds