Wall clock time and date at job start Tue Mar 31 2020 00:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.09002 * 110.85491 * 297.66698 * 12 10 9 14 14 C 1.54622 * 110.97172 * 61.45348 * 12 10 9 15 15 C 1.51278 * 104.19776 * 142.91527 * 14 12 10 16 16 O 1.21278 * 124.94408 * 163.78222 * 15 14 12 17 17 N 1.34417 * 110.11403 * 343.75174 * 15 14 12 18 18 C 1.46499 * 124.35019 * 179.61072 * 17 15 14 19 19 C 1.50706 * 109.47110 * 90.02533 * 18 17 15 20 20 C 1.34512 * 125.79160 * 90.00208 * 19 18 17 21 21 C 1.41378 * 106.84116 * 180.02562 * 20 19 18 22 22 C 1.34516 * 106.83905 * 359.97438 * 21 20 19 23 23 O 1.34296 * 108.42113 * 359.74272 * 22 21 20 24 24 C 1.46770 * 111.30280 * 359.59024 * 17 15 14 25 25 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 27 27 H 1.09003 * 110.49179 * 261.59769 * 14 12 10 28 28 H 1.09009 * 110.48473 * 24.10598 * 14 12 10 29 29 H 1.09005 * 109.47098 * 210.02209 * 18 17 15 30 30 H 1.08999 * 109.47082 * 330.02438 * 18 17 15 31 31 H 1.08002 * 126.57840 * 0.03034 * 20 19 18 32 32 H 1.08005 * 126.58064 * 179.97438 * 21 20 19 33 33 H 1.08003 * 125.78749 * 180.02562 * 22 21 20 34 34 H 1.09007 * 110.24206 * 258.01904 * 24 17 15 35 35 H 1.08996 * 110.24711 * 136.01454 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.6400 -4.9675 0.8810 14 6 0.3701 -4.9902 -1.2897 15 6 0.4603 -6.4550 -1.6569 16 8 -0.2910 -7.0282 -2.4170 17 7 1.4948 -7.0287 -1.0185 18 6 1.8619 -8.4416 -1.1426 19 6 2.8387 -8.6089 -2.2779 20 6 4.1785 -8.5413 -2.1794 21 6 4.6960 -8.7544 -3.4777 22 6 3.6414 -8.9400 -4.2919 23 8 2.5194 -8.8568 -3.5587 24 6 2.2096 -6.0578 -0.1815 25 1 -0.4849 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0068 27 1 -0.6617 -4.7144 -1.0719 28 1 0.7691 -4.3687 -2.0914 29 1 2.3223 -8.7802 -0.2143 30 1 0.9683 -9.0330 -1.3419 31 1 4.7494 -8.3593 -1.2809 32 1 5.7380 -8.7660 -3.7614 33 1 3.6892 -9.1289 -5.3542 34 1 3.1271 -5.7375 -0.6753 35 1 2.4363 -6.4934 0.7916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162037329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:54 Heat of formation + Delta-G solvation = -52.575458 kcal Electronic energy + Delta-G solvation = -21169.898802 eV Core-core repulsion = 17748.741612 eV Total energy + Delta-G solvation = -3421.157190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.57795 -40.36833 -38.17253 -36.06927 -34.09523 -33.56296 -32.80402 -31.31157 -29.79357 -27.41924 -26.30080 -24.98362 -22.49424 -21.73582 -20.82621 -19.47236 -19.07225 -17.98571 -17.56926 -16.87941 -16.54745 -15.76897 -15.44391 -15.19515 -14.56900 -14.22832 -14.09299 -13.96076 -13.49882 -13.14992 -12.90513 -12.84824 -12.75986 -12.38598 -12.29899 -11.87057 -11.63154 -11.21549 -11.09424 -10.96393 -10.45401 -10.29079 -9.97224 -9.77130 -9.61409 -8.84013 -8.55422 -8.49842 -8.08385 -6.51226 -3.92742 1.59018 2.49714 2.65958 3.01664 3.11846 3.21616 3.23037 3.28105 3.71647 4.08115 4.41999 4.60417 4.65423 4.82689 4.94749 4.97769 5.12415 5.19062 5.26335 5.31575 5.45450 5.69327 5.74604 5.83928 5.85766 6.02069 6.03955 6.22173 6.31413 6.42559 6.52379 7.04682 7.18394 7.46661 7.94121 8.25816 8.47328 9.06345 9.41419 9.90631 10.65774 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026529 B = 0.003960 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.207376 B = 7069.155271 C = 7494.351669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.446 3.554 11 O -0.592 6.592 12 C -0.111 4.111 13 H 0.104 0.896 14 C -0.144 4.144 15 C 0.523 3.477 16 O -0.532 6.532 17 N -0.619 5.619 18 C 0.207 3.793 19 C -0.034 4.034 20 C -0.193 4.193 21 C -0.217 4.217 22 C -0.039 4.039 23 O -0.167 6.167 24 C 0.120 3.880 25 H 0.274 0.726 26 H 0.394 0.606 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.201 0.799 34 H 0.092 0.908 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -15.270 -1.859 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.186 5.186 10 C 0.231 3.769 11 O -0.478 6.478 12 C -0.133 4.133 13 H 0.122 0.878 14 C -0.185 4.185 15 C 0.312 3.688 16 O -0.408 6.408 17 N -0.353 5.353 18 C 0.085 3.915 19 C -0.086 4.086 20 C -0.213 4.213 21 C -0.236 4.236 22 C -0.108 4.108 23 O -0.062 6.062 24 C -0.002 4.002 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.217 0.783 34 H 0.110 0.890 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.204 -15.485 -2.347 15.986 hybrid contribution 0.204 0.960 -0.067 0.983 sum 3.408 -14.526 -2.414 15.114 Atomic orbital electron populations 1.69605 1.05987 1.28464 1.49575 1.25297 0.95633 0.99859 0.96868 0.85845 0.79264 0.80633 0.78496 1.20304 1.20836 1.19320 1.19737 0.93455 0.82113 1.48119 0.87733 1.41849 1.09353 1.04512 1.62854 1.19324 0.87919 0.84307 0.85338 1.90533 1.13635 1.86892 1.56744 1.22092 0.97145 0.95143 0.98936 0.87772 1.22377 1.02941 0.93925 0.99233 1.21025 0.79420 0.89523 0.78857 1.90702 1.44751 1.69629 1.35732 1.48438 1.30695 1.08966 1.47200 1.19632 0.96835 0.82131 0.92904 1.22959 0.95367 1.06005 0.84263 1.21656 0.93448 1.07111 0.99124 1.21841 1.00168 1.08249 0.93383 1.24077 0.83169 1.05835 0.97678 1.84087 1.34600 1.68903 1.18644 1.22022 0.95938 0.87153 0.95075 0.91644 0.77199 0.87381 0.87175 0.86987 0.88390 0.83310 0.83466 0.78264 0.88964 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.48 13.05 55.50 0.72 -22.76 16 2 C 0.03 0.67 5.50 -17.46 -0.10 0.58 16 3 Si 0.93 20.32 29.55 -169.99 -5.02 15.29 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.11 5.24 -10.96 -0.06 -13.17 16 10 C 0.45 9.68 7.02 -10.98 -0.08 9.60 16 11 O -0.59 -14.87 15.15 5.55 0.08 -14.79 16 12 C -0.11 -1.77 3.54 -90.14 -0.32 -2.09 16 13 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 14 C -0.14 -2.27 6.37 -26.75 -0.17 -2.44 16 15 C 0.52 8.66 8.02 -10.86 -0.09 8.57 16 16 O -0.53 -10.38 17.59 5.56 0.10 -10.28 16 17 N -0.62 -8.71 2.92 -173.78 -0.51 -9.21 16 18 C 0.21 2.41 6.46 -5.19 -0.03 2.38 16 19 C -0.03 -0.46 6.90 -35.62 -0.25 -0.70 16 20 C -0.19 -2.37 10.81 -39.71 -0.43 -2.80 16 21 C -0.22 -2.49 10.91 -39.70 -0.43 -2.93 16 22 C -0.04 -0.45 12.09 29.42 0.36 -0.10 16 23 O -0.17 -2.43 10.65 5.73 0.06 -2.37 16 24 C 0.12 1.73 6.66 -3.12 -0.02 1.70 16 25 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 26 H 0.39 8.98 7.90 -40.82 -0.32 8.66 16 27 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.11 1.88 7.89 -51.92 -0.41 1.47 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.14 7.93 -51.93 -0.41 0.73 16 31 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.20 1.53 8.06 -52.48 -0.42 1.10 16 34 H 0.09 1.54 7.06 -51.92 -0.37 1.17 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 312.42 15.07 4.71 4.71 Total: -1.00 -32.85 312.42 -5.59 -38.44 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.98 Total: 10.60 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.70 Total: 3.53 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.16 Total: -45.13 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: 0.24 Total: -27.44 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.85 -5.59 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162037329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.135 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds