Wall clock time and date at job start Tue Mar 31 2020 00:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.09002 * 110.85491 * 297.66698 * 12 10 9 14 14 C 1.54622 * 110.97172 * 61.45348 * 12 10 9 15 15 C 1.51278 * 104.19776 * 142.91527 * 14 12 10 16 16 O 1.21278 * 124.94408 * 163.78222 * 15 14 12 17 17 N 1.34417 * 110.11403 * 343.75174 * 15 14 12 18 18 C 1.46499 * 124.35019 * 179.61072 * 17 15 14 19 19 C 1.50706 * 109.47110 * 90.02533 * 18 17 15 20 20 C 1.34512 * 125.79160 * 90.00208 * 19 18 17 21 21 C 1.41378 * 106.84116 * 180.02562 * 20 19 18 22 22 C 1.34516 * 106.83905 * 359.97438 * 21 20 19 23 23 O 1.34296 * 108.42113 * 359.74272 * 22 21 20 24 24 C 1.46770 * 111.30280 * 359.59024 * 17 15 14 25 25 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 27 27 H 1.09003 * 110.49179 * 261.59769 * 14 12 10 28 28 H 1.09009 * 110.48473 * 24.10598 * 14 12 10 29 29 H 1.09005 * 109.47098 * 210.02209 * 18 17 15 30 30 H 1.08999 * 109.47082 * 330.02438 * 18 17 15 31 31 H 1.08002 * 126.57840 * 0.03034 * 20 19 18 32 32 H 1.08005 * 126.58064 * 179.97438 * 21 20 19 33 33 H 1.08003 * 125.78749 * 180.02562 * 22 21 20 34 34 H 1.09007 * 110.24206 * 258.01904 * 24 17 15 35 35 H 1.08996 * 110.24711 * 136.01454 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.6400 -4.9675 0.8810 14 6 0.3701 -4.9902 -1.2897 15 6 0.4603 -6.4550 -1.6569 16 8 -0.2910 -7.0282 -2.4170 17 7 1.4948 -7.0287 -1.0185 18 6 1.8619 -8.4416 -1.1426 19 6 2.8387 -8.6089 -2.2779 20 6 4.1785 -8.5413 -2.1794 21 6 4.6960 -8.7544 -3.4777 22 6 3.6414 -8.9400 -4.2919 23 8 2.5194 -8.8568 -3.5587 24 6 2.2096 -6.0578 -0.1815 25 1 -0.4849 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0068 27 1 -0.6617 -4.7144 -1.0719 28 1 0.7691 -4.3687 -2.0914 29 1 2.3223 -8.7802 -0.2143 30 1 0.9683 -9.0330 -1.3419 31 1 4.7494 -8.3593 -1.2809 32 1 5.7380 -8.7660 -3.7614 33 1 3.6892 -9.1289 -5.3542 34 1 3.1271 -5.7375 -0.6753 35 1 2.4363 -6.4934 0.7916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162037329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:53 Heat of formation + Delta-G solvation = -75.147364 kcal Electronic energy + Delta-G solvation = -21170.877594 eV Core-core repulsion = 17748.741612 eV Total energy + Delta-G solvation = -3422.135981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.51630 -41.69128 -39.88181 -37.43160 -35.98435 -34.73764 -33.80370 -33.17296 -30.89483 -28.72075 -27.57729 -26.56275 -23.92630 -22.68654 -21.80503 -20.88435 -20.52327 -19.84246 -18.57051 -18.32463 -17.69511 -17.02647 -16.78268 -16.52648 -16.15138 -15.76817 -15.58664 -15.37264 -14.68305 -14.51500 -14.29079 -13.88252 -13.75174 -13.70676 -13.52448 -13.43606 -12.92502 -12.80795 -12.49370 -12.35733 -12.28220 -12.07931 -11.51436 -11.15830 -10.86777 -10.36414 -10.03678 -9.94165 -9.48646 -8.46722 -5.95395 0.63617 1.37917 1.39216 1.44531 1.56128 1.60279 1.98322 2.07288 2.19123 2.31050 2.99126 3.18045 3.34981 3.54949 3.74411 3.93266 4.04182 4.10327 4.12120 4.30491 4.42680 4.51053 4.57043 4.65282 4.83030 4.88449 4.97215 5.03814 5.15747 5.39251 5.42895 5.57999 5.89455 5.99223 6.20736 6.56661 6.99633 7.11169 7.54096 8.07086 8.70110 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026529 B = 0.003960 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.207376 B = 7069.155271 C = 7494.351669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.083 0.917 9 N -0.563 5.563 10 C 0.450 3.550 11 O -0.627 6.627 12 C -0.099 4.099 13 H 0.138 0.862 14 C -0.140 4.140 15 C 0.521 3.479 16 O -0.566 6.566 17 N -0.608 5.608 18 C 0.203 3.797 19 C -0.060 4.060 20 C -0.196 4.196 21 C -0.230 4.230 22 C -0.046 4.046 23 O -0.197 6.197 24 C 0.127 3.873 25 H 0.278 0.722 26 H 0.398 0.602 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.232 0.768 34 H 0.068 0.932 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.655 -15.924 -1.182 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.101 0.899 9 N -0.198 5.198 10 C 0.237 3.763 11 O -0.514 6.514 12 C -0.121 4.121 13 H 0.156 0.844 14 C -0.181 4.181 15 C 0.310 3.690 16 O -0.446 6.446 17 N -0.340 5.340 18 C 0.082 3.918 19 C -0.111 4.111 20 C -0.216 4.216 21 C -0.249 4.249 22 C -0.113 4.113 23 O -0.093 6.093 24 C 0.005 3.995 25 H 0.088 0.912 26 H 0.232 0.768 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.171 0.829 30 H 0.115 0.885 31 H 0.183 0.817 32 H 0.187 0.813 33 H 0.248 0.752 34 H 0.087 0.913 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.633 -16.160 -1.653 16.646 hybrid contribution 0.156 1.086 -0.321 1.143 sum 3.789 -15.074 -1.974 15.668 Atomic orbital electron populations 1.69662 1.06834 1.29396 1.49791 1.26011 0.96456 1.02378 0.96098 0.84964 0.78061 0.77049 0.78525 1.19949 1.19703 1.19488 1.19702 0.92847 0.83877 1.50033 0.89926 1.41901 1.09476 1.04591 1.63806 1.20224 0.87745 0.85551 0.82745 1.90512 1.15572 1.87789 1.57571 1.22020 0.97283 0.92324 1.00488 0.84376 1.22323 1.03787 0.93529 0.98445 1.21062 0.79742 0.89603 0.78599 1.90685 1.46286 1.70257 1.37335 1.48460 1.29500 1.09966 1.46104 1.20001 0.97035 0.80395 0.94339 1.23282 0.96164 1.07344 0.84329 1.21997 0.93350 1.06148 1.00133 1.22226 1.01342 1.08091 0.93201 1.24817 0.82539 1.04897 0.99052 1.84073 1.36119 1.69586 1.19532 1.21989 0.94243 0.86764 0.96548 0.91244 0.76752 0.85728 0.89030 0.82924 0.88541 0.81691 0.81323 0.75213 0.91349 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.77 13.05 21.67 0.28 -47.48 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 0.99 41.45 29.55 68.60 2.03 43.48 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.34 -18.08 9.68 84.04 0.81 -17.27 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.56 -26.91 5.24 -306.97 -1.61 -28.52 16 10 C 0.45 19.42 7.02 87.66 0.62 20.04 16 11 O -0.63 -31.66 15.15 -3.07 -0.05 -31.70 16 12 C -0.10 -3.00 3.54 -10.49 -0.04 -3.04 16 13 H 0.14 3.33 8.14 -2.39 -0.02 3.31 16 14 C -0.14 -4.30 6.37 30.58 0.19 -4.10 16 15 C 0.52 16.77 8.02 87.90 0.71 17.48 16 16 O -0.57 -22.00 17.59 -3.02 -0.05 -22.06 16 17 N -0.61 -15.97 2.92 -822.31 -2.40 -18.37 16 18 C 0.20 4.33 6.46 85.63 0.55 4.88 16 19 C -0.06 -1.54 6.90 24.83 0.17 -1.36 16 20 C -0.20 -4.49 10.81 22.19 0.24 -4.25 16 21 C -0.23 -4.91 10.91 22.19 0.24 -4.67 16 22 C -0.05 -1.00 12.09 66.97 0.81 -0.19 16 23 O -0.20 -5.63 10.65 -2.41 -0.03 -5.65 16 24 C 0.13 3.34 6.66 86.83 0.58 3.92 16 25 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 26 H 0.40 18.15 7.90 -92.71 -0.73 17.42 16 27 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.09 3.17 7.89 -2.38 -0.02 3.15 16 29 H 0.15 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.10 2.11 7.93 -2.39 -0.02 2.09 16 31 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.23 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.07 2.20 7.06 -2.38 -0.02 2.18 16 35 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -71.93 312.42 3.93 -68.01 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.39 Total: 30.86 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.35 Total: 11.44 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.72 Total: -94.37 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: -0.13 Total: -59.41 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -71.93 3.93 -68.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162037329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.142 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds