Wall clock time and date at job start Tue Mar 31 2020 00:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38254 * 120.00305 * 2 1 4 4 C 1.50702 * 119.99964 * 0.02562 * 3 2 1 5 5 C 1.50704 * 109.47272 * 84.72242 * 4 3 2 6 6 O 1.21291 * 119.99698 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00201 * 179.72621 * 5 4 3 8 8 C 1.46499 * 119.99971 * 0.27617 * 7 5 4 9 9 C 1.37099 * 120.00245 * 180.27721 * 7 5 4 10 10 H 1.07998 * 119.99885 * 324.06401 * 9 7 5 11 11 C 1.38942 * 120.00134 * 144.06050 * 9 7 5 12 12 N 1.31407 * 120.00112 * 155.96527 * 11 9 7 13 13 Si 1.86798 * 119.99947 * 335.96570 * 11 9 7 14 14 H 1.48505 * 109.47413 * 94.09545 * 13 11 9 15 15 H 1.48505 * 109.47345 * 214.09201 * 13 11 9 16 16 H 1.48493 * 109.47324 * 334.09311 * 13 11 9 17 17 C 1.38208 * 120.00167 * 179.72385 * 3 2 1 18 18 C 1.38260 * 120.00275 * 0.28018 * 17 3 2 19 19 C 1.38219 * 119.99500 * 359.97438 * 18 17 3 20 20 C 1.38214 * 119.99926 * 180.18857 * 2 1 3 21 21 N 1.48016 * 120.00049 * 0.04837 * 20 2 1 22 22 O 1.21802 * 120.00006 * 184.61582 * 21 20 2 23 23 O 1.21802 * 120.00274 * 4.61601 * 21 20 2 24 24 H 1.09003 * 109.47211 * 96.41937 * 1 2 3 25 25 H 1.08999 * 109.47609 * 216.41598 * 1 2 3 26 26 H 1.09003 * 109.47118 * 336.42220 * 1 2 3 27 27 H 1.09002 * 109.47117 * 324.72630 * 4 3 2 28 28 H 1.08994 * 109.47279 * 204.72600 * 4 3 2 29 29 H 1.09007 * 109.47335 * 84.18894 * 8 7 5 30 30 H 1.08992 * 109.47771 * 204.19260 * 8 7 5 31 31 H 1.09008 * 109.47209 * 324.19548 * 8 7 5 32 32 H 0.97004 * 120.00489 * 180.02562 * 12 11 9 33 33 H 1.08008 * 120.00173 * 180.25493 * 17 3 2 34 34 H 1.07999 * 120.00223 * 179.97438 * 18 17 3 35 35 H 1.08004 * 119.99754 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4448 2.5024 0.0006 5 6 1.0810 2.8719 1.4156 6 8 1.4024 2.1469 2.3334 7 7 0.4038 4.0108 1.6619 8 6 0.0161 4.8867 0.5535 9 6 0.0778 4.3497 2.9497 10 1 -0.1897 3.5807 3.6592 11 6 0.0917 5.6825 3.3421 12 7 -0.6380 6.0748 4.3621 13 14 1.1476 6.9168 2.4195 14 1 0.3311 7.5818 1.3724 15 1 1.6607 7.9368 3.3691 16 1 2.2902 6.2132 1.7837 17 6 3.5803 1.1972 0.0058 18 6 4.2717 -0.0001 0.0057 19 6 3.5805 -1.1971 0.0004 20 6 2.1980 -1.1970 -0.0039 21 7 1.4579 -2.4788 -0.0092 22 8 2.0639 -3.5323 0.0722 23 8 0.2429 -2.4803 -0.0950 24 1 -0.3634 -0.1149 -1.0212 25 1 -0.3634 -0.8270 0.6100 26 1 -0.3633 0.9419 0.4111 27 1 0.5363 2.3978 -0.5926 28 1 2.0713 3.2839 -0.4293 29 1 -0.9195 4.5325 0.1205 30 1 -0.1167 5.9034 0.9230 31 1 0.7959 4.8759 -0.2082 32 1 -0.6287 7.0054 4.6358 33 1 4.1204 2.1326 0.0099 34 1 5.3516 -0.0001 0.0098 35 1 4.1205 -2.1324 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164093372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:08 Heat of formation + Delta-G solvation = 4.557100 kcal Electronic energy + Delta-G solvation = -21603.890270 eV Core-core repulsion = 18185.210534 eV Total energy + Delta-G solvation = -3418.679736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15777 -40.01636 -38.45950 -36.57075 -34.99158 -33.47678 -32.75518 -32.11417 -28.82240 -27.43912 -26.50907 -25.84067 -24.61000 -22.21916 -21.50249 -19.27673 -18.54649 -18.27807 -17.49469 -17.18445 -16.29057 -16.24497 -16.04424 -15.56330 -14.50622 -14.30479 -13.87697 -13.55550 -13.11255 -12.87433 -12.74497 -12.61894 -12.44724 -12.22978 -12.22360 -11.84183 -11.71919 -11.36373 -11.15742 -11.03400 -10.86992 -10.49647 -10.44658 -10.03907 -9.50280 -9.19401 -9.02363 -8.57926 -7.88443 -6.51103 -4.05786 -0.03713 0.96694 1.44760 1.53007 2.92317 3.12233 3.15649 3.26250 3.55395 4.03422 4.22978 4.39783 4.43596 4.67768 4.86065 4.86279 4.91157 5.08273 5.37781 5.39498 5.50145 5.57571 5.62319 5.66577 5.76564 5.83960 5.98754 6.03962 6.14680 6.18065 6.24009 6.31640 6.68360 7.41252 7.77835 8.15995 8.37335 8.84457 9.19837 9.62084 10.60838 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.004666 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.168727 B = 5999.593168 C = 6374.743814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.005 3.995 3 C -0.051 4.051 4 C -0.106 4.106 5 C 0.461 3.539 6 O -0.559 6.559 7 N -0.466 5.466 8 C 0.059 3.941 9 C -0.320 4.320 10 H 0.106 0.894 11 C 0.061 3.939 12 N -0.857 5.857 13 Si 0.878 3.122 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.266 1.266 17 C -0.053 4.053 18 C -0.125 4.125 19 C -0.061 4.061 20 C -0.050 4.050 21 N 0.037 4.963 22 O -0.178 6.178 23 O -0.160 6.160 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.275 0.725 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -6.222 -13.659 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.003 3.997 3 C -0.052 4.052 4 C -0.146 4.146 5 C 0.248 3.752 6 O -0.441 6.441 7 N -0.187 5.187 8 C -0.085 4.085 9 C -0.447 4.447 10 H 0.124 0.876 11 C -0.146 4.146 12 N -0.493 5.493 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.190 1.190 17 C -0.071 4.071 18 C -0.144 4.144 19 C -0.080 4.080 20 C -0.134 4.134 21 N 0.552 4.448 22 O -0.390 6.390 23 O -0.375 6.375 24 H 0.103 0.897 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.411 -5.835 -13.031 16.086 hybrid contribution 0.387 0.625 -0.344 0.811 sum 7.797 -5.210 -13.375 16.335 Atomic orbital electron populations 1.21362 0.88690 1.05481 1.03732 1.19660 0.98042 0.89910 0.92064 1.19344 0.93458 0.93496 0.98952 1.20823 1.01230 0.93929 0.98636 1.19947 0.81369 0.84763 0.89083 1.90601 1.55735 1.51747 1.45990 1.43674 1.48621 1.19786 1.06667 1.22073 0.99427 0.96505 0.90465 1.19045 1.45157 0.93864 0.86640 0.87618 1.25351 0.95768 0.97329 0.96126 1.69779 1.34497 1.17632 1.27406 0.86989 0.81941 0.81135 0.79437 1.20130 1.21305 1.18999 1.21488 0.93579 0.99120 0.92944 1.21072 1.00681 0.90825 1.01804 1.20931 0.90850 1.00615 0.95631 1.20864 0.92393 0.82904 1.17203 1.43574 1.01112 1.02790 0.97295 1.94499 1.70129 1.20145 1.54226 1.94465 0.96101 1.93881 1.53056 0.89677 0.88171 0.90238 0.88324 0.88430 0.92755 0.91194 0.92764 0.91447 0.84223 0.83809 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.10 36.00 0.29 -1.70 16 2 C 0.00 0.07 5.88 -104.63 -0.62 -0.54 16 3 C -0.05 -0.75 4.37 -104.63 -0.46 -1.21 16 4 C -0.11 -1.57 3.77 -29.03 -0.11 -1.68 16 5 C 0.46 9.82 6.89 -10.98 -0.08 9.74 16 6 O -0.56 -14.31 15.88 5.55 0.09 -14.22 16 7 N -0.47 -10.57 2.60 -122.19 -0.32 -10.89 16 8 C 0.06 1.05 8.77 59.85 0.52 1.58 16 9 C -0.32 -8.76 9.38 -14.94 -0.14 -8.90 16 10 H 0.11 3.30 7.88 -52.49 -0.41 2.88 16 11 C 0.06 1.62 5.25 -17.47 -0.09 1.53 16 12 N -0.86 -24.12 13.96 55.50 0.77 -23.35 16 13 Si 0.88 19.49 25.15 -169.99 -4.27 15.21 16 14 H -0.27 -5.59 6.59 56.52 0.37 -5.22 16 15 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 C -0.05 -0.66 9.68 -39.58 -0.38 -1.04 16 18 C -0.13 -1.35 10.05 -39.58 -0.40 -1.74 16 19 C -0.06 -0.75 9.56 -39.58 -0.38 -1.13 16 20 C -0.05 -0.75 6.84 -79.95 -0.55 -1.29 16 21 N 0.04 0.60 4.45 33.96 0.15 0.75 16 22 O -0.18 -2.87 18.46 -29.46 -0.54 -3.41 16 23 O -0.16 -2.63 15.33 -29.46 -0.45 -3.08 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.10 1.57 5.78 -51.93 -0.30 1.27 16 26 H 0.08 1.24 5.86 -51.93 -0.30 0.93 16 27 H 0.10 1.24 6.85 -51.93 -0.36 0.89 16 28 H 0.10 1.19 7.32 -51.93 -0.38 0.81 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.35 3.45 -51.93 -0.18 1.17 16 31 H 0.05 0.76 6.67 -51.92 -0.35 0.42 16 32 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.15 1.52 7.62 -52.48 -0.40 1.12 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -32.63 297.30 -6.01 -38.64 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.53 Total: 2.27 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.38 Total: -6.40 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.61 Total: -33.49 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.91 Total: -20.71 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.27 Total: 15.21 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.63 -6.01 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164093372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.194 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds