Wall clock time and date at job start Tue Mar 31 2020 00:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38254 * 120.00305 * 2 1 4 4 C 1.50702 * 119.99964 * 0.02562 * 3 2 1 5 5 C 1.50704 * 109.47272 * 84.72242 * 4 3 2 6 6 O 1.21291 * 119.99698 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00201 * 179.72621 * 5 4 3 8 8 C 1.46499 * 119.99971 * 0.27617 * 7 5 4 9 9 C 1.37099 * 120.00245 * 180.27721 * 7 5 4 10 10 H 1.07998 * 119.99885 * 324.06401 * 9 7 5 11 11 C 1.38942 * 120.00134 * 144.06050 * 9 7 5 12 12 N 1.31407 * 120.00112 * 155.96527 * 11 9 7 13 13 Si 1.86798 * 119.99947 * 335.96570 * 11 9 7 14 14 H 1.48505 * 109.47413 * 94.09545 * 13 11 9 15 15 H 1.48505 * 109.47345 * 214.09201 * 13 11 9 16 16 H 1.48493 * 109.47324 * 334.09311 * 13 11 9 17 17 C 1.38208 * 120.00167 * 179.72385 * 3 2 1 18 18 C 1.38260 * 120.00275 * 0.28018 * 17 3 2 19 19 C 1.38219 * 119.99500 * 359.97438 * 18 17 3 20 20 C 1.38214 * 119.99926 * 180.18857 * 2 1 3 21 21 N 1.48016 * 120.00049 * 0.04837 * 20 2 1 22 22 O 1.21802 * 120.00006 * 184.61582 * 21 20 2 23 23 O 1.21802 * 120.00274 * 4.61601 * 21 20 2 24 24 H 1.09003 * 109.47211 * 96.41937 * 1 2 3 25 25 H 1.08999 * 109.47609 * 216.41598 * 1 2 3 26 26 H 1.09003 * 109.47118 * 336.42220 * 1 2 3 27 27 H 1.09002 * 109.47117 * 324.72630 * 4 3 2 28 28 H 1.08994 * 109.47279 * 204.72600 * 4 3 2 29 29 H 1.09007 * 109.47335 * 84.18894 * 8 7 5 30 30 H 1.08992 * 109.47771 * 204.19260 * 8 7 5 31 31 H 1.09008 * 109.47209 * 324.19548 * 8 7 5 32 32 H 0.97004 * 120.00489 * 180.02562 * 12 11 9 33 33 H 1.08008 * 120.00173 * 180.25493 * 17 3 2 34 34 H 1.07999 * 120.00223 * 179.97438 * 18 17 3 35 35 H 1.08004 * 119.99754 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4448 2.5024 0.0006 5 6 1.0810 2.8719 1.4156 6 8 1.4024 2.1469 2.3334 7 7 0.4038 4.0108 1.6619 8 6 0.0161 4.8867 0.5535 9 6 0.0778 4.3497 2.9497 10 1 -0.1897 3.5807 3.6592 11 6 0.0917 5.6825 3.3421 12 7 -0.6380 6.0748 4.3621 13 14 1.1476 6.9168 2.4195 14 1 0.3311 7.5818 1.3724 15 1 1.6607 7.9368 3.3691 16 1 2.2902 6.2132 1.7837 17 6 3.5803 1.1972 0.0058 18 6 4.2717 -0.0001 0.0057 19 6 3.5805 -1.1971 0.0004 20 6 2.1980 -1.1970 -0.0039 21 7 1.4579 -2.4788 -0.0092 22 8 2.0639 -3.5323 0.0722 23 8 0.2429 -2.4803 -0.0950 24 1 -0.3634 -0.1149 -1.0212 25 1 -0.3634 -0.8270 0.6100 26 1 -0.3633 0.9419 0.4111 27 1 0.5363 2.3978 -0.5926 28 1 2.0713 3.2839 -0.4293 29 1 -0.9195 4.5325 0.1205 30 1 -0.1167 5.9034 0.9230 31 1 0.7959 4.8759 -0.2082 32 1 -0.6287 7.0054 4.6358 33 1 4.1204 2.1326 0.0099 34 1 5.3516 -0.0001 0.0098 35 1 4.1205 -2.1324 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164093372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:08 Heat of formation + Delta-G solvation = -16.568379 kcal Electronic energy + Delta-G solvation = -21604.806340 eV Core-core repulsion = 18185.210534 eV Total energy + Delta-G solvation = -3419.595806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.33754 -41.24280 -39.93113 -37.78617 -36.74445 -34.64653 -34.10250 -33.74841 -30.08461 -28.64913 -27.99126 -26.97863 -26.31737 -23.33610 -22.65417 -20.76311 -19.71821 -19.53628 -19.05143 -18.69713 -17.92505 -17.44574 -17.10137 -17.02946 -16.01471 -15.68637 -15.06822 -14.77891 -14.60162 -14.27478 -14.14066 -14.03393 -13.87376 -13.41859 -13.32491 -13.23337 -12.98521 -12.63353 -12.57171 -12.30298 -12.23400 -12.16097 -11.82524 -11.65542 -11.05619 -10.62956 -10.34512 -9.89560 -9.72528 -8.52947 -6.13437 -1.16820 -0.01783 0.33224 0.41952 1.21289 1.34368 1.47324 1.93708 2.18113 2.24358 2.78016 2.98738 3.28475 3.42496 3.71839 3.84516 3.97883 3.99508 4.10248 4.34981 4.38739 4.45330 4.52967 4.57572 4.66119 4.71670 4.84875 4.86630 4.99291 5.05415 5.19868 5.31104 5.50717 5.61569 6.02837 6.53547 6.54458 6.93953 7.29887 7.86415 8.64723 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.004666 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.168727 B = 5999.593168 C = 6374.743814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 C -0.074 4.074 4 C -0.092 4.092 5 C 0.459 3.541 6 O -0.614 6.614 7 N -0.481 5.481 8 C 0.050 3.950 9 C -0.340 4.340 10 H 0.037 0.963 11 C 0.009 3.991 12 N -0.912 5.912 13 Si 0.956 3.044 14 H -0.236 1.236 15 H -0.294 1.294 16 H -0.251 1.251 17 C -0.049 4.049 18 C -0.112 4.112 19 C -0.059 4.059 20 C -0.072 4.072 21 N 0.036 4.964 22 O -0.182 6.182 23 O -0.186 6.186 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.123 0.877 28 H 0.139 0.861 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.280 0.720 33 H 0.169 0.831 34 H 0.188 0.812 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.799 -4.740 -17.043 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.016 4.016 3 C -0.075 4.075 4 C -0.132 4.132 5 C 0.249 3.751 6 O -0.499 6.499 7 N -0.203 5.203 8 C -0.091 4.091 9 C -0.468 4.468 10 H 0.055 0.945 11 C -0.193 4.193 12 N -0.549 5.549 13 Si 0.779 3.221 14 H -0.161 1.161 15 H -0.221 1.221 16 H -0.175 1.175 17 C -0.067 4.067 18 C -0.131 4.131 19 C -0.078 4.078 20 C -0.156 4.156 21 N 0.548 4.452 22 O -0.395 6.395 23 O -0.395 6.395 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.157 0.843 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.205 0.795 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.169 -4.358 -16.462 19.834 hybrid contribution -0.459 0.039 0.774 0.901 sum 9.710 -4.319 -15.687 18.948 Atomic orbital electron populations 1.21287 0.89226 1.03725 1.04574 1.19795 0.98085 0.90680 0.93060 1.19471 0.94684 0.92841 1.00536 1.20789 1.03271 0.95303 0.93798 1.21060 0.79498 0.83045 0.91505 1.90570 1.57438 1.53163 1.48695 1.43806 1.49358 1.21174 1.06004 1.22353 1.02405 0.94706 0.89672 1.18600 1.46733 0.92920 0.88541 0.94452 1.26238 0.96281 0.99388 0.97413 1.69912 1.36295 1.18587 1.30085 0.85760 0.80017 0.77715 0.78634 1.16108 1.22122 1.17451 1.21950 0.92764 1.01046 0.90959 1.21581 1.02657 0.89418 0.99401 1.21357 0.89763 1.02404 0.94311 1.21131 0.93454 0.81947 1.19097 1.43840 1.01114 1.03335 0.96926 1.94465 1.69997 1.20849 1.54140 1.94461 0.96683 1.94128 1.54269 0.87517 0.90083 0.91718 0.85869 0.84309 0.90649 0.92495 0.87713 0.91037 0.81356 0.79518 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.10 71.23 0.58 -3.32 16 2 C -0.01 -0.43 5.88 -19.87 -0.12 -0.55 16 3 C -0.07 -1.96 4.37 -19.87 -0.09 -2.05 16 4 C -0.09 -2.41 3.77 29.10 0.11 -2.30 16 5 C 0.46 19.17 6.89 87.66 0.60 19.77 16 6 O -0.61 -32.29 15.88 -3.06 -0.05 -32.33 16 7 N -0.48 -21.53 2.60 -658.89 -1.71 -23.24 16 8 C 0.05 1.61 8.77 127.77 1.12 2.73 16 9 C -0.34 -19.43 9.38 84.04 0.79 -18.65 16 10 H 0.04 2.56 7.88 -2.91 -0.02 2.54 16 11 C 0.01 0.49 5.25 84.93 0.45 0.93 16 12 N -0.91 -53.40 13.96 21.66 0.30 -53.10 16 13 Si 0.96 39.14 25.15 68.60 1.73 40.87 16 14 H -0.24 -8.24 6.59 99.48 0.66 -7.58 16 15 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 16 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 17 C -0.05 -1.00 9.68 22.27 0.22 -0.79 16 18 C -0.11 -1.92 10.05 22.27 0.22 -1.69 16 19 C -0.06 -1.29 9.56 22.27 0.21 -1.08 16 20 C -0.07 -2.09 6.84 36.37 0.25 -1.84 16 21 N 0.04 1.17 4.45 -46.47 -0.21 0.97 16 22 O -0.18 -5.81 18.46 18.88 0.35 -5.46 16 23 O -0.19 -6.29 15.33 18.88 0.29 -6.00 16 24 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.08 2.69 5.78 -2.39 -0.01 2.67 16 26 H 0.06 2.05 5.86 -2.39 -0.01 2.04 16 27 H 0.12 2.63 6.85 -2.39 -0.02 2.61 16 28 H 0.14 2.50 7.32 -2.39 -0.02 2.48 16 29 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.06 1.98 3.45 -2.39 -0.01 1.97 16 31 H 0.10 2.28 6.67 -2.38 -0.02 2.26 16 32 H 0.28 14.98 8.31 -92.71 -0.77 14.20 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.17 2.92 7.62 -2.91 -0.02 2.89 16 Total: -1.00 -79.10 297.30 6.12 -72.98 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.08 Total: 14.15 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.34 Total: -8.83 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.62 Total: -75.37 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: 0.59 Total: -43.80 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.73 Total: 40.87 kcal Total: -79.10 6.12 -72.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164093372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.413 kcal (2) G-P(sol) polarization free energy of solvation -79.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds