Wall clock time and date at job start Mon Mar 30 2020 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00246 * 2 1 4 4 H 1.48496 * 109.46929 * 270.00041 * 3 2 1 5 5 H 1.48500 * 109.46875 * 30.00143 * 3 2 1 6 6 H 1.48499 * 109.46796 * 149.99884 * 3 2 1 7 7 C 1.37879 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00340 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99510 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47037 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47278 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47300 * 179.97438 * 11 10 9 13 13 C 1.29436 * 119.99704 * 115.00215 * 12 11 10 14 14 C 1.47380 * 119.99701 * 180.27816 * 13 12 11 15 15 C 1.39710 * 120.18840 * 179.44557 * 14 13 12 16 16 C 1.37828 * 119.89825 * 179.78911 * 15 14 13 17 17 N 1.48008 * 119.85233 * 180.23002 * 16 15 14 18 18 O 1.21803 * 119.99828 * 180.25420 * 17 16 15 19 19 O 1.21799 * 119.99932 * 0.25741 * 17 16 15 20 20 C 1.38515 * 120.29458 * 0.49018 * 16 15 14 21 21 C 1.38104 * 120.39253 * 359.74211 * 20 16 15 22 22 C 1.38644 * 120.09100 * 0.02562 * 21 20 16 23 23 O 1.35706 * 120.14954 * 179.97438 * 22 21 20 24 24 H 0.97001 * 119.99828 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46917 * 60.00274 * 9 7 2 26 26 H 1.09000 * 109.47668 * 299.99820 * 9 7 2 27 27 H 1.09000 * 109.47202 * 60.00056 * 10 9 7 28 28 H 1.08997 * 109.47453 * 299.99964 * 10 9 7 29 29 H 1.08995 * 109.47405 * 60.00101 * 11 10 9 30 30 H 1.09000 * 109.47472 * 300.00056 * 11 10 9 31 31 H 1.08002 * 119.99865 * 359.97438 * 13 12 11 32 32 H 1.08000 * 120.05636 * 359.97438 * 15 14 13 33 33 H 1.08000 * 119.80192 * 179.71825 * 20 16 15 34 34 H 1.08006 * 119.95412 * 180.02562 * 21 20 16 35 35 H 0.96699 * 114.00062 * 269.98129 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5513 -2.6368 -0.0009 12 7 6.0396 -4.0181 -0.0002 13 6 6.7020 -4.4708 -1.0159 14 6 7.1880 -5.8622 -1.0178 15 6 7.8933 -6.3585 -2.1169 16 6 8.3488 -7.6593 -2.1104 17 7 9.1004 -8.1825 -3.2732 18 8 9.5001 -9.3331 -3.2723 19 8 9.3192 -7.4625 -4.2309 20 6 8.1016 -8.4808 -1.0229 21 6 7.4015 -8.0042 0.0679 22 6 6.9400 -6.6969 0.0806 23 8 6.2514 -6.2275 1.1516 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.6577 -3.1507 -0.8907 28 1 3.6584 -3.1503 0.8892 29 1 5.9147 -2.1230 0.8890 30 1 5.9148 -2.1230 -0.8909 31 1 6.8944 -3.8304 -1.8640 32 1 8.0841 -5.7230 -2.9690 33 1 8.4583 -9.5002 -1.0283 34 1 7.2131 -8.6508 0.9122 35 1 5.2948 -6.3548 1.0907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171417219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:24 Heat of formation + Delta-G solvation = -4.778894 kcal Electronic energy + Delta-G solvation = -19969.761684 eV Core-core repulsion = 16550.677108 eV Total energy + Delta-G solvation = -3419.084576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43351 -40.39055 -37.19405 -36.86812 -36.76208 -34.07204 -32.41845 -31.53960 -31.00059 -27.63613 -26.39389 -24.62882 -23.08022 -22.57016 -20.84135 -20.24931 -19.09090 -18.93758 -18.57450 -17.77968 -16.91674 -16.42646 -15.99776 -15.61394 -14.90721 -14.75564 -14.15848 -14.12107 -13.75060 -13.30241 -12.93688 -12.81193 -12.56407 -12.00564 -11.83542 -11.52902 -11.47203 -11.38756 -11.15265 -10.99902 -10.84085 -10.19744 -9.91218 -9.85804 -9.74868 -9.34621 -9.31430 -8.97855 -8.62223 -6.12391 -4.11409 -0.51146 0.17627 0.94420 1.09840 2.06968 2.95454 3.24080 3.32105 3.34499 3.57204 3.66264 3.97521 4.25748 4.33595 4.37429 4.47671 4.92988 5.03394 5.15811 5.20823 5.23204 5.29058 5.46430 5.63331 5.70530 5.84861 5.88945 6.10285 6.31941 6.45962 6.72654 7.15298 7.24806 7.27687 7.37026 7.61272 7.70990 8.44458 8.91592 9.49405 11.00985 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031549 B = 0.002806 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.293724 B = 9976.320855 C =10401.833875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.091 4.091 11 C 0.027 3.973 12 N -0.464 5.464 13 C 0.144 3.856 14 C -0.084 4.084 15 C -0.017 4.017 16 C -0.063 4.063 17 N 0.033 4.967 18 O -0.164 6.164 19 O -0.161 6.161 20 C -0.033 4.033 21 C -0.153 4.153 22 C 0.206 3.794 23 O -0.464 6.464 24 H 0.264 0.736 25 H 0.018 0.982 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.109 0.891 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.316 -16.139 -1.560 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.129 4.129 11 C -0.101 4.101 12 N -0.172 5.172 13 C -0.067 4.067 14 C -0.086 4.086 15 C -0.038 4.038 16 C -0.146 4.146 17 N 0.551 4.449 18 O -0.379 6.379 19 O -0.377 6.377 20 C -0.053 4.053 21 C -0.173 4.173 22 C 0.157 3.843 23 O -0.277 6.277 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 16.904 -15.687 0.122 23.062 hybrid contribution 0.252 1.238 -1.195 1.739 sum 17.156 -14.449 -1.073 22.456 Atomic orbital electron populations 1.69910 1.06318 1.27003 1.50850 1.25039 0.94757 0.99228 0.94461 0.86761 0.80341 0.83558 0.78522 1.20269 1.21273 1.19031 1.21083 0.89283 0.94527 1.51185 0.91040 1.19562 0.97402 0.91695 0.96368 1.21446 0.89277 1.00356 1.01811 1.22787 0.98827 0.86746 1.01765 1.71844 1.04824 1.16167 1.24344 1.23768 0.95565 0.92259 0.95094 1.19221 1.01437 0.94815 0.93164 1.20985 0.91671 0.92674 0.98465 1.20883 1.07691 0.96339 0.89728 1.43544 0.99016 1.00547 1.01766 1.94537 1.53668 1.02650 1.87034 1.94558 1.61015 1.56575 1.25506 1.20969 0.93699 1.00539 0.90060 1.21492 1.01162 0.95423 0.99177 1.18990 0.90825 0.89481 0.85033 1.84716 1.23939 1.82279 1.36752 0.92633 0.96388 0.97092 0.92900 0.91664 0.89117 0.93842 0.87444 0.82137 0.82557 0.82692 0.73158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.28 4.04 -27.88 -0.11 -0.40 16 10 C -0.09 -1.70 5.48 -26.73 -0.15 -1.85 16 11 C 0.03 0.42 6.39 -4.04 -0.03 0.39 16 12 N -0.46 -6.23 8.36 -59.09 -0.49 -6.72 16 13 C 0.14 1.57 10.44 -14.84 -0.16 1.41 16 14 C -0.08 -0.78 5.88 -104.90 -0.62 -1.40 16 15 C -0.02 -0.14 9.29 -39.18 -0.36 -0.50 16 16 C -0.06 -0.57 6.84 -80.00 -0.55 -1.12 16 17 N 0.03 0.37 4.45 33.94 0.15 0.52 16 18 O -0.16 -1.93 18.43 -29.46 -0.54 -2.47 16 19 O -0.16 -1.96 18.43 -29.46 -0.54 -2.50 16 20 C -0.03 -0.23 9.54 -39.53 -0.38 -0.61 16 21 C -0.15 -1.01 9.98 -39.48 -0.39 -1.41 16 22 C 0.21 1.79 6.72 -38.71 -0.26 1.53 16 23 O -0.46 -4.40 11.38 -18.82 -0.21 -4.61 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 31 H 0.11 0.99 7.76 -52.49 -0.41 0.58 16 32 H 0.16 1.15 7.59 -52.49 -0.40 0.75 16 33 H 0.16 0.85 7.59 -52.49 -0.40 0.45 16 34 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.41 2.71 9.06 45.56 0.41 3.12 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -32.71 316.21 -7.44 -40.14 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -3.23 Total: -1.91 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -3.43 Total: -17.11 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.43 Total: -32.94 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -1.30 Total: -9.58 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.71 -7.44 -40.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171417219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.364 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds