Wall clock time and date at job start Mon Mar 30 2020 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00246 * 2 1 4 4 H 1.48496 * 109.46929 * 270.00041 * 3 2 1 5 5 H 1.48500 * 109.46875 * 30.00143 * 3 2 1 6 6 H 1.48499 * 109.46796 * 149.99884 * 3 2 1 7 7 C 1.37879 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00340 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99510 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47037 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47278 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47300 * 179.97438 * 11 10 9 13 13 C 1.29436 * 119.99704 * 115.00215 * 12 11 10 14 14 C 1.47380 * 119.99701 * 180.27816 * 13 12 11 15 15 C 1.39710 * 120.18840 * 179.44557 * 14 13 12 16 16 C 1.37828 * 119.89825 * 179.78911 * 15 14 13 17 17 N 1.48008 * 119.85233 * 180.23002 * 16 15 14 18 18 O 1.21803 * 119.99828 * 180.25420 * 17 16 15 19 19 O 1.21799 * 119.99932 * 0.25741 * 17 16 15 20 20 C 1.38515 * 120.29458 * 0.49018 * 16 15 14 21 21 C 1.38104 * 120.39253 * 359.74211 * 20 16 15 22 22 C 1.38644 * 120.09100 * 0.02562 * 21 20 16 23 23 O 1.35706 * 120.14954 * 179.97438 * 22 21 20 24 24 H 0.97001 * 119.99828 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46917 * 60.00274 * 9 7 2 26 26 H 1.09000 * 109.47668 * 299.99820 * 9 7 2 27 27 H 1.09000 * 109.47202 * 60.00056 * 10 9 7 28 28 H 1.08997 * 109.47453 * 299.99964 * 10 9 7 29 29 H 1.08995 * 109.47405 * 60.00101 * 11 10 9 30 30 H 1.09000 * 109.47472 * 300.00056 * 11 10 9 31 31 H 1.08002 * 119.99865 * 359.97438 * 13 12 11 32 32 H 1.08000 * 120.05636 * 359.97438 * 15 14 13 33 33 H 1.08000 * 119.80192 * 179.71825 * 20 16 15 34 34 H 1.08006 * 119.95412 * 180.02562 * 21 20 16 35 35 H 0.96699 * 114.00062 * 269.98129 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5513 -2.6368 -0.0009 12 7 6.0396 -4.0181 -0.0002 13 6 6.7020 -4.4708 -1.0159 14 6 7.1880 -5.8622 -1.0178 15 6 7.8933 -6.3585 -2.1169 16 6 8.3488 -7.6593 -2.1104 17 7 9.1004 -8.1825 -3.2732 18 8 9.5001 -9.3331 -3.2723 19 8 9.3192 -7.4625 -4.2309 20 6 8.1016 -8.4808 -1.0229 21 6 7.4015 -8.0042 0.0679 22 6 6.9400 -6.6969 0.0806 23 8 6.2514 -6.2275 1.1516 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.6577 -3.1507 -0.8907 28 1 3.6584 -3.1503 0.8892 29 1 5.9147 -2.1230 0.8890 30 1 5.9148 -2.1230 -0.8909 31 1 6.8944 -3.8304 -1.8640 32 1 8.0841 -5.7230 -2.9690 33 1 8.4583 -9.5002 -1.0283 34 1 7.2131 -8.6508 0.9122 35 1 5.2948 -6.3548 1.0907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171417219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:24 Heat of formation + Delta-G solvation = -26.720301 kcal Electronic energy + Delta-G solvation = -19970.713135 eV Core-core repulsion = 16550.677108 eV Total energy + Delta-G solvation = -3420.036026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.24067 -41.07462 -37.98113 -37.80355 -37.65838 -35.70499 -33.98389 -32.44431 -32.00141 -29.15326 -27.17759 -25.86324 -23.85467 -23.70981 -22.03692 -21.60706 -19.84349 -19.76230 -19.29231 -18.91927 -18.59086 -17.32626 -16.67001 -16.55561 -16.37850 -15.73165 -15.57152 -15.01908 -14.77736 -14.56407 -14.28643 -13.76869 -13.63620 -13.32633 -13.13461 -12.75408 -12.70788 -12.34456 -12.28275 -12.20131 -11.90517 -11.76592 -11.61388 -11.51458 -11.34451 -10.79400 -10.38804 -10.27234 -9.85999 -8.32281 -6.37298 -1.27428 -0.50024 0.19692 0.34711 1.27774 1.34808 1.37036 1.48752 2.26287 2.34108 2.80907 2.97631 3.03211 3.38678 3.57949 3.64205 3.81902 4.04985 4.21429 4.29619 4.45979 4.52689 4.55219 4.63879 4.72718 4.77236 4.94512 4.99949 5.07810 5.15923 5.35308 5.44182 5.52171 5.62332 6.24101 6.48077 6.66075 6.69168 6.73802 7.27629 8.84624 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031549 B = 0.002806 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.293724 B = 9976.320855 C =10401.833875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.081 4.081 11 C 0.039 3.961 12 N -0.495 5.495 13 C 0.161 3.839 14 C -0.102 4.102 15 C -0.006 4.006 16 C -0.077 4.077 17 N 0.034 4.966 18 O -0.171 6.171 19 O -0.188 6.188 20 C -0.020 4.020 21 C -0.142 4.142 22 C 0.205 3.795 23 O -0.478 6.478 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.021 0.979 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.184 0.816 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.509 -16.304 -1.343 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.119 4.119 11 C -0.090 4.090 12 N -0.203 5.203 13 C -0.049 4.049 14 C -0.104 4.104 15 C -0.028 4.028 16 C -0.161 4.161 17 N 0.549 4.451 18 O -0.387 6.387 19 O -0.399 6.399 20 C -0.039 4.039 21 C -0.161 4.161 22 C 0.157 3.843 23 O -0.293 6.293 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.189 0.811 33 H 0.194 0.806 34 H 0.201 0.799 35 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 19.117 -15.859 0.309 24.841 hybrid contribution -0.468 1.092 -1.249 1.724 sum 18.650 -14.767 -0.940 23.807 Atomic orbital electron populations 1.70074 1.08418 1.28266 1.52545 1.26076 0.95657 1.03741 0.94016 0.85607 0.79541 0.77912 0.79278 1.19043 1.21073 1.16705 1.21480 0.92192 0.93054 1.50616 0.95229 1.19506 0.93859 0.94648 0.96826 1.21199 0.92471 0.97370 1.00822 1.22479 0.95743 0.88432 1.02347 1.71872 1.07622 1.14916 1.25855 1.24166 0.93121 0.93002 0.94605 1.19154 1.02884 0.94374 0.94035 1.21044 0.90674 0.92630 0.98411 1.21019 1.08536 0.96985 0.89555 1.43811 0.98833 1.00338 1.02109 1.94519 1.53938 1.02987 1.87224 1.94553 1.62105 1.56657 1.26552 1.21269 0.92380 1.01151 0.89140 1.21707 0.99950 0.94782 0.99656 1.19226 0.90404 0.90163 0.84539 1.84680 1.24904 1.82611 1.37070 0.92445 0.95846 0.96021 0.93786 0.92860 0.89252 0.92683 0.85596 0.81119 0.80569 0.79903 0.71978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.95 43.43 27.47 68.60 1.88 45.31 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 7 C -0.54 -30.64 9.66 25.60 0.25 -30.39 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.08 -3.00 5.48 30.59 0.17 -2.83 16 11 C 0.04 1.12 6.39 86.38 0.55 1.67 16 12 N -0.49 -12.50 8.36 -340.86 -2.85 -15.34 16 13 C 0.16 3.18 10.44 87.45 0.91 4.09 16 14 C -0.10 -1.69 5.88 -20.05 -0.12 -1.80 16 15 C -0.01 -0.09 9.29 22.53 0.21 0.12 16 16 C -0.08 -1.25 6.84 36.35 0.25 -1.00 16 17 N 0.03 0.73 4.45 -46.54 -0.21 0.52 16 18 O -0.17 -3.80 18.43 18.88 0.35 -3.45 16 19 O -0.19 -4.46 18.43 18.89 0.35 -4.11 16 20 C -0.02 -0.22 9.54 22.30 0.21 -0.01 16 21 C -0.14 -1.42 9.98 22.33 0.22 -1.20 16 22 C 0.21 3.09 6.72 22.83 0.15 3.24 16 23 O -0.48 -8.21 11.38 -90.26 -1.03 -9.24 16 24 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 26 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 31 H 0.13 1.97 7.76 -2.91 -0.02 1.95 16 32 H 0.17 2.13 7.59 -2.91 -0.02 2.11 16 33 H 0.18 1.30 7.59 -2.91 -0.02 1.28 16 34 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.42 5.04 9.06 -74.06 -0.67 4.37 16 Total: -1.00 -71.88 316.21 2.59 -69.29 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 0.40 Total: 4.23 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.39 Total: -27.89 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -2.76 Total: -74.14 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.33 Total: -16.80 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.31 kcal Total: -71.88 2.59 -69.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171417219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.568 kcal (2) G-P(sol) polarization free energy of solvation -71.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds