Wall clock time and date at job start Mon Mar 30 2020 23:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48495 * 109.47206 * 269.99966 * 3 2 1 5 5 H 1.48500 * 109.47107 * 29.99549 * 3 2 1 6 6 H 1.48496 * 109.47734 * 149.99433 * 3 2 1 7 7 C 1.37871 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00297 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47518 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.34233 * 116.99649 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00153 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99702 * 179.97438 * 12 11 10 15 15 C 1.50702 * 115.55486 * 325.58955 * 14 12 11 16 16 C 1.38271 * 119.98267 * 34.41013 * 15 14 12 17 17 C 1.38229 * 120.05108 * 179.72445 * 16 15 14 18 18 C 1.38224 * 120.01985 * 0.30685 * 17 16 15 19 19 C 1.38434 * 119.97764 * 359.96998 * 18 17 16 20 20 F 1.35105 * 120.02401 * 180.02562 * 19 18 17 21 21 C 1.38171 * 119.99195 * 214.69457 * 15 14 12 22 22 C 1.52999 * 117.49913 * 111.25920 * 14 12 11 23 23 C 1.52996 * 117.49839 * 179.97438 * 14 12 11 24 24 H 0.96993 * 120.00649 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46863 * 59.99796 * 9 7 2 26 26 H 1.09003 * 109.46824 * 300.00477 * 9 7 2 27 27 H 1.09000 * 109.47386 * 59.99913 * 10 9 7 28 28 H 1.09002 * 109.46568 * 300.00124 * 10 9 7 29 29 H 1.08002 * 119.97858 * 0.02562 * 16 15 14 30 30 H 1.07994 * 119.98968 * 180.27807 * 17 16 15 31 31 H 1.08004 * 120.00445 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.01425 * 359.97438 * 21 15 14 33 33 H 1.09000 * 117.50023 * 215.00138 * 22 14 12 34 34 H 1.09002 * 117.49481 * 0.02562 * 22 14 12 35 35 H 1.08999 * 117.50279 * 359.97438 * 23 14 12 36 36 H 1.09001 * 117.50318 * 144.97972 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 8 1.5195 -4.9195 0.0024 12 6 2.2507 -6.0452 0.0030 13 8 3.4573 -5.9819 0.0035 14 6 1.5666 -7.3880 0.0043 15 6 0.2723 -7.4574 0.7731 16 6 -0.5707 -6.3620 0.8073 17 6 -1.7609 -6.4261 1.5073 18 6 -2.1066 -7.5835 2.1792 19 6 -1.2606 -8.6789 2.1504 20 9 -1.5978 -9.8109 2.8063 21 6 -0.0688 -8.6137 1.4483 22 6 1.6839 -8.2418 -1.2599 23 6 2.4551 -8.6335 0.0043 24 1 -0.4851 0.8399 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8715 -3.6039 0.8922 28 1 2.8728 -3.6045 -0.8877 29 1 -0.3014 -5.4572 0.2827 30 1 -2.4207 -5.5714 1.5297 31 1 -3.0364 -7.6332 2.7264 32 1 0.5918 -9.4677 1.4249 33 1 0.8250 -8.8537 -1.5355 34 1 2.2563 -7.8324 -2.0923 35 1 3.5345 -8.4818 0.0030 36 1 2.1033 -9.5028 0.5599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172098083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:49 Heat of formation + Delta-G solvation = -87.634199 kcal Electronic energy + Delta-G solvation = -20855.966459 eV Core-core repulsion = 17413.369046 eV Total energy + Delta-G solvation = -3442.597413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.96365 -40.72980 -39.01906 -37.13906 -35.77418 -33.39489 -30.86259 -30.69682 -30.16266 -26.06945 -24.50866 -23.10514 -22.61874 -22.17944 -20.95706 -19.79852 -18.22157 -16.84866 -16.64840 -16.19122 -16.08145 -15.98623 -15.69867 -15.57609 -14.81286 -14.55686 -14.02950 -13.58881 -13.40376 -13.18782 -12.76583 -12.55266 -12.40054 -11.80507 -11.60082 -11.38608 -11.32558 -10.94825 -10.90341 -10.79516 -10.77686 -10.66633 -10.31760 -9.71600 -9.67263 -9.33890 -8.99472 -8.63577 -8.47957 -6.14229 -4.18553 1.03647 1.16040 2.32251 2.92911 3.26218 3.32658 3.36587 3.42307 3.71591 4.04200 4.29028 4.35596 4.50275 4.67022 4.72636 4.90269 5.00779 5.22750 5.24642 5.35228 5.39063 5.50582 5.63169 5.76972 5.87403 5.99622 6.03455 6.04284 6.08311 6.43674 6.47338 6.58997 6.82290 6.94924 7.49848 7.56602 7.81941 8.10641 8.20530 8.86645 9.46217 10.97183 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.004107 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.781924 B = 6815.468357 C = 7890.862853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.071 3.929 11 O -0.348 6.348 12 C 0.497 3.503 13 O -0.511 6.511 14 C -0.104 4.104 15 C -0.024 4.024 16 C -0.108 4.108 17 C -0.086 4.086 18 C -0.154 4.154 19 C 0.091 3.909 20 F -0.143 7.143 21 C -0.152 4.152 22 C -0.134 4.134 23 C -0.141 4.141 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.160 0.840 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 -18.196 0.861 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.001 4.001 11 O -0.264 6.264 12 C 0.340 3.660 13 O -0.400 6.400 14 C -0.105 4.105 15 C -0.024 4.024 16 C -0.125 4.125 17 C -0.104 4.104 18 C -0.173 4.173 19 C 0.072 3.928 20 F -0.122 7.122 21 C -0.171 4.171 22 C -0.171 4.171 23 C -0.178 4.178 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.177 0.823 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.268 -18.038 0.894 18.202 hybrid contribution 0.457 0.871 0.222 1.008 sum -1.811 -17.167 1.116 17.299 Atomic orbital electron populations 1.69958 1.06069 1.27029 1.49732 1.24961 0.94909 0.99349 0.94798 0.86482 0.79801 0.82844 0.78261 1.20473 1.21030 1.19720 1.20970 0.93190 0.90103 1.52285 0.92284 1.19174 0.94149 0.88985 0.98856 1.23730 0.96550 0.78739 1.01079 1.86486 1.41736 1.15720 1.82460 1.21994 0.85667 0.85788 0.72545 1.90632 1.15342 1.87915 1.46072 1.19684 0.96406 0.89394 1.05033 1.18550 0.93333 0.93754 0.96785 1.21808 0.93056 0.99369 0.98304 1.21148 0.96692 0.97185 0.95350 1.21213 1.00496 0.92964 1.02626 1.17544 0.95365 0.83223 0.96706 1.91484 1.92432 1.49165 1.79129 1.20898 0.96604 0.99544 1.00005 1.23223 1.03069 0.99897 0.90900 1.23281 0.99408 0.94915 1.00179 0.92689 0.95313 0.95293 0.92214 0.92208 0.82295 0.84360 0.84843 0.84699 0.87014 0.87351 0.86617 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.07 1.53 5.40 37.16 0.20 1.73 16 11 O -0.35 -6.61 6.90 -39.26 -0.27 -6.88 16 12 C 0.50 8.61 7.46 36.01 0.27 8.88 16 13 O -0.51 -9.93 16.01 -18.75 -0.30 -10.23 16 14 C -0.10 -1.37 2.50 -156.81 -0.39 -1.76 16 15 C -0.02 -0.31 5.44 -104.63 -0.57 -0.88 16 16 C -0.11 -1.51 9.08 -39.57 -0.36 -1.87 16 17 C -0.09 -1.05 10.04 -39.59 -0.40 -1.45 16 18 C -0.15 -1.75 10.03 -39.51 -0.40 -2.15 16 19 C 0.09 1.08 7.30 -39.42 -0.29 0.80 16 20 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 21 C -0.15 -1.76 9.37 -39.52 -0.37 -2.13 16 22 C -0.13 -1.35 9.94 -26.64 -0.26 -1.62 16 23 C -0.14 -1.44 9.39 -26.64 -0.25 -1.69 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 29 H 0.16 2.52 5.29 -52.49 -0.28 2.24 16 30 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.14 1.27 5.92 -52.49 -0.31 0.96 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.12 1.25 7.67 -51.93 -0.40 0.86 16 36 H 0.11 0.88 6.07 -51.93 -0.32 0.56 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -30.26 316.15 -7.65 -37.91 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.22 Total: -0.09 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -3.38 Total: -14.85 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.74 Total: -25.01 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.57 Total: -17.11 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.26 -7.65 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172098083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.723 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds