Wall clock time and date at job start Mon Mar 30 2020 23:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48495 * 109.47206 * 269.99966 * 3 2 1 5 5 H 1.48500 * 109.47107 * 29.99549 * 3 2 1 6 6 H 1.48496 * 109.47734 * 149.99433 * 3 2 1 7 7 C 1.37871 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00297 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47518 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.34233 * 116.99649 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00153 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99702 * 179.97438 * 12 11 10 15 15 C 1.50702 * 115.55486 * 325.58955 * 14 12 11 16 16 C 1.38271 * 119.98267 * 34.41013 * 15 14 12 17 17 C 1.38229 * 120.05108 * 179.72445 * 16 15 14 18 18 C 1.38224 * 120.01985 * 0.30685 * 17 16 15 19 19 C 1.38434 * 119.97764 * 359.96998 * 18 17 16 20 20 F 1.35105 * 120.02401 * 180.02562 * 19 18 17 21 21 C 1.38171 * 119.99195 * 214.69457 * 15 14 12 22 22 C 1.52999 * 117.49913 * 111.25920 * 14 12 11 23 23 C 1.52996 * 117.49839 * 179.97438 * 14 12 11 24 24 H 0.96993 * 120.00649 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46863 * 59.99796 * 9 7 2 26 26 H 1.09003 * 109.46824 * 300.00477 * 9 7 2 27 27 H 1.09000 * 109.47386 * 59.99913 * 10 9 7 28 28 H 1.09002 * 109.46568 * 300.00124 * 10 9 7 29 29 H 1.08002 * 119.97858 * 0.02562 * 16 15 14 30 30 H 1.07994 * 119.98968 * 180.27807 * 17 16 15 31 31 H 1.08004 * 120.00445 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.01425 * 359.97438 * 21 15 14 33 33 H 1.09000 * 117.50023 * 215.00138 * 22 14 12 34 34 H 1.09002 * 117.49481 * 0.02562 * 22 14 12 35 35 H 1.08999 * 117.50279 * 359.97438 * 23 14 12 36 36 H 1.09001 * 117.50318 * 144.97972 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 8 1.5195 -4.9195 0.0024 12 6 2.2507 -6.0452 0.0030 13 8 3.4573 -5.9819 0.0035 14 6 1.5666 -7.3880 0.0043 15 6 0.2723 -7.4574 0.7731 16 6 -0.5707 -6.3620 0.8073 17 6 -1.7609 -6.4261 1.5073 18 6 -2.1066 -7.5835 2.1792 19 6 -1.2606 -8.6789 2.1504 20 9 -1.5978 -9.8109 2.8063 21 6 -0.0688 -8.6137 1.4483 22 6 1.6839 -8.2418 -1.2599 23 6 2.4551 -8.6335 0.0043 24 1 -0.4851 0.8399 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8715 -3.6039 0.8922 28 1 2.8728 -3.6045 -0.8877 29 1 -0.3014 -5.4572 0.2827 30 1 -2.4207 -5.5714 1.5297 31 1 -3.0364 -7.6332 2.7264 32 1 0.5918 -9.4677 1.4249 33 1 0.8250 -8.8537 -1.5355 34 1 2.2563 -7.8324 -2.0923 35 1 3.5345 -8.4818 0.0030 36 1 2.1033 -9.5028 0.5599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172098083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:48 Heat of formation + Delta-G solvation = -102.097880 kcal Electronic energy + Delta-G solvation = -20856.593651 eV Core-core repulsion = 17413.369046 eV Total energy + Delta-G solvation = -3443.224605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.88909 -41.99129 -40.15275 -38.35439 -37.07470 -35.46125 -32.42711 -31.76323 -31.40585 -27.65266 -26.05086 -24.00377 -23.78977 -23.10118 -22.80213 -21.03448 -19.40633 -18.52799 -17.88153 -17.68640 -17.45850 -17.11294 -16.74239 -16.57542 -16.49575 -15.72908 -15.05826 -14.96761 -14.90097 -14.38646 -14.19193 -13.86534 -13.54362 -13.25737 -13.17600 -12.64492 -12.63251 -12.55937 -12.36647 -12.25718 -11.93671 -11.80861 -11.63246 -11.52016 -11.47878 -11.33202 -10.61352 -9.91786 -9.60689 -8.27435 -6.40297 0.09421 0.20608 1.00024 1.40370 1.42152 1.52146 1.61443 2.39017 2.46121 2.77078 3.07225 3.09926 3.35793 3.54732 3.60226 3.84329 3.92328 4.11622 4.20151 4.22744 4.29427 4.41992 4.52892 4.63572 4.68798 4.84352 4.88911 5.05523 5.11417 5.12026 5.21757 5.42753 5.46546 5.50799 5.54069 5.72777 5.91720 6.06290 6.64757 6.73153 7.29459 8.84870 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.004107 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.781924 B = 6815.468357 C = 7890.862853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.086 3.914 11 O -0.350 6.350 12 C 0.492 3.508 13 O -0.536 6.536 14 C -0.129 4.129 15 C -0.027 4.027 16 C -0.132 4.132 17 C -0.091 4.091 18 C -0.151 4.151 19 C 0.086 3.914 20 F -0.142 7.142 21 C -0.145 4.145 22 C -0.117 4.117 23 C -0.123 4.123 24 H 0.268 0.732 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -19.670 1.033 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.013 3.987 11 O -0.266 6.266 12 C 0.337 3.663 13 O -0.427 6.427 14 C -0.130 4.130 15 C -0.027 4.027 16 C -0.150 4.150 17 C -0.109 4.109 18 C -0.169 4.169 19 C 0.067 3.933 20 F -0.121 7.121 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.159 4.159 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.156 0.844 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.946 -19.535 1.063 19.660 hybrid contribution 0.318 1.251 0.170 1.302 sum -1.628 -18.283 1.233 18.397 Atomic orbital electron populations 1.70074 1.07685 1.28246 1.50294 1.25895 0.95809 1.03185 0.94054 0.85372 0.78565 0.78010 0.78668 1.19544 1.20367 1.18903 1.21367 0.93638 0.91349 1.52610 0.91927 1.18949 0.94206 0.90320 0.96792 1.23225 0.95269 0.79347 1.00840 1.86543 1.41625 1.15587 1.82867 1.22890 0.85642 0.86470 0.71268 1.90609 1.16432 1.88270 1.47362 1.19746 0.97309 0.87677 1.08273 1.18522 0.93023 0.94003 0.97197 1.21719 0.94534 0.99140 0.99634 1.21247 0.96309 0.98058 0.95304 1.21420 1.01230 0.92253 1.02033 1.17667 0.95613 0.83306 0.96689 1.91491 1.92434 1.49062 1.79092 1.21056 0.96759 0.99628 0.98856 1.23427 1.03711 0.98182 0.90079 1.23466 0.98750 0.93673 1.00020 0.92331 0.97295 0.97366 0.92555 0.92187 0.84958 0.83622 0.82653 0.82090 0.84447 0.87475 0.87290 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 13.29 21.45 0.28 -54.21 16 2 C 0.01 0.55 5.46 84.65 0.46 1.02 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.82 5.35 29.85 0.16 1.98 16 10 C 0.09 3.86 5.40 71.98 0.39 4.24 16 11 O -0.35 -13.85 6.90 -51.44 -0.35 -14.21 16 12 C 0.49 17.26 7.46 71.24 0.53 17.79 16 13 O -0.54 -21.05 16.01 21.97 0.35 -20.70 16 14 C -0.13 -3.25 2.50 -53.68 -0.13 -3.38 16 15 C -0.03 -0.68 5.44 -19.87 -0.11 -0.79 16 16 C -0.13 -3.78 9.08 22.28 0.20 -3.57 16 17 C -0.09 -2.22 10.04 22.26 0.22 -1.99 16 18 C -0.15 -3.18 10.03 22.31 0.22 -2.96 16 19 C 0.09 1.86 7.30 22.37 0.16 2.03 16 20 F -0.14 -3.05 17.27 44.97 0.78 -2.27 16 21 C -0.14 -2.98 9.37 22.31 0.21 -2.77 16 22 C -0.12 -2.08 9.94 30.65 0.30 -1.77 16 23 C -0.12 -2.17 9.39 30.65 0.29 -1.88 16 24 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 2.53 8.13 -2.39 -0.02 2.51 16 28 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 29 H 0.13 4.48 5.29 -2.91 -0.02 4.46 16 30 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 32 H 0.16 2.37 5.92 -2.91 -0.02 2.35 16 33 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.11 2.13 7.67 -2.39 -0.02 2.11 16 36 H 0.14 1.61 6.07 -2.39 -0.01 1.59 16 Total: -1.00 -66.04 316.15 7.33 -58.71 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.10 Total: 10.25 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 3.15 Total: -22.88 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.28 Total: -54.21 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: 0.00 Total: -34.91 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.04 7.33 -58.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172098083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.384 kcal (2) G-P(sol) polarization free energy of solvation -66.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds