Wall clock time and date at job start Mon Mar 30 2020 23:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48503 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46971 * 299.99985 * 3 2 1 6 6 H 1.48500 * 109.46992 * 60.00127 * 3 2 1 7 7 C 1.37876 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47023 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.47014 * 179.97438 * 11 10 9 13 13 O 1.42095 * 109.46478 * 296.38760 * 12 11 10 14 14 C 1.81403 * 102.99874 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.46673 * 179.97438 * 14 12 11 16 16 C 1.32566 * 119.99689 * 115.27730 * 15 14 12 17 17 C 1.47810 * 119.99639 * 179.72067 * 16 15 14 18 18 C 1.39535 * 120.14481 * 359.72282 * 17 16 15 19 19 C 1.37971 * 119.85935 * 179.67223 * 18 17 16 20 20 C 1.38348 * 120.13862 * 0.63019 * 19 18 17 21 21 C 1.38340 * 120.28531 * 359.67095 * 20 19 18 22 22 C 1.37971 * 120.14732 * 0.02562 * 21 20 19 23 23 H 0.97001 * 119.99608 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47429 * 59.99702 * 9 7 2 25 25 H 1.09003 * 109.47080 * 299.99555 * 9 7 2 26 26 H 1.08999 * 109.47364 * 59.99493 * 10 9 7 27 27 H 1.09003 * 109.46655 * 299.99646 * 10 9 7 28 28 H 1.08999 * 109.47348 * 59.99625 * 11 10 9 29 29 H 1.09003 * 109.47232 * 299.99435 * 11 10 9 30 30 H 1.08997 * 109.47025 * 60.00243 * 14 12 11 31 31 H 1.08995 * 109.47091 * 299.99957 * 14 12 11 32 32 H 1.08002 * 119.99761 * 294.99456 * 15 14 12 33 33 H 1.08002 * 120.00487 * 359.72336 * 16 15 14 34 34 H 1.08005 * 120.06828 * 359.97438 * 18 17 16 35 35 H 1.07997 * 119.93254 * 180.32026 * 19 18 17 36 36 H 1.08004 * 119.85526 * 179.69476 * 20 19 18 37 37 H 1.08000 * 119.92782 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.07979 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6590 -6.3659 -0.0025 13 8 3.4193 -6.3385 -1.2026 14 6 1.5806 -7.8247 -0.0023 15 6 2.4246 -9.0731 -0.0033 16 6 2.3903 -9.8971 1.0346 17 6 3.2134 -11.1248 1.0310 18 6 4.0232 -11.4223 -0.0657 19 6 4.7942 -12.5665 -0.0600 20 6 4.7559 -13.4246 1.0244 21 6 3.9504 -13.1386 2.1122 22 6 3.1792 -11.9946 2.1217 23 1 -0.4849 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8713 -3.6048 0.8890 27 1 2.8725 -3.6040 -0.8910 28 1 0.8538 -5.0447 -0.8922 29 1 0.8532 -5.0450 0.8878 30 1 0.9512 -7.8113 -0.8921 31 1 0.9517 -7.8114 0.8879 32 1 3.0538 -9.2989 -0.8515 33 1 1.7609 -9.6715 1.8828 34 1 4.0500 -10.7559 -0.9152 35 1 5.4253 -12.7952 -0.9061 36 1 5.3576 -14.3215 1.0220 37 1 3.9252 -13.8124 2.9559 38 1 2.5511 -11.7722 2.9716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172820206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:10 Heat of formation + Delta-G solvation = -19.281018 kcal Electronic energy + Delta-G solvation = -17448.653979 eV Core-core repulsion = 14575.233759 eV Total energy + Delta-G solvation = -2873.420220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.43637 -35.49217 -35.33942 -34.42815 -32.02727 -31.32214 -31.09417 -27.62811 -26.85247 -23.56652 -23.13774 -22.24423 -20.35355 -19.50759 -17.59775 -17.16423 -16.31049 -15.76713 -15.30813 -15.14356 -14.87527 -14.52637 -14.35455 -14.04829 -13.70636 -13.41433 -13.22275 -13.03743 -12.41382 -12.15344 -12.01745 -11.74143 -11.48193 -11.31325 -11.10217 -10.88887 -10.83643 -10.72708 -10.56977 -10.06708 -9.79907 -9.32554 -9.22343 -9.08631 -8.37117 -8.36702 -7.88141 -6.01556 -4.04074 0.60610 1.14035 1.60658 2.40963 2.83779 3.30894 3.38318 3.43166 3.67477 3.93545 4.41035 4.45631 4.52638 4.69549 4.78298 4.90870 5.00407 5.16580 5.21185 5.34152 5.36048 5.47356 5.58924 5.60536 5.69666 5.76910 6.04304 6.15753 6.19153 6.24328 6.38996 6.50646 6.56084 6.69620 6.72561 7.03840 7.65027 7.77260 7.97983 8.39892 9.03153 9.60263 11.09719 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.051936 B = 0.002330 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.995067 B =12015.362052 C =12148.911623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.433 4.433 12 S 1.233 4.767 13 O -0.848 6.848 14 C -0.426 4.426 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.051 4.051 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.111 4.111 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.019 0.981 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -26.137 6.400 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.572 4.572 12 S 1.434 4.566 13 O -0.844 6.844 14 C -0.560 4.560 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.051 4.051 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.129 4.129 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.435 -25.999 6.356 27.527 hybrid contribution -1.140 0.914 -1.886 2.386 sum 5.295 -25.085 4.470 26.025 Atomic orbital electron populations 1.69977 1.06082 1.26519 1.50988 1.25041 0.94878 0.99348 0.95297 0.86519 0.80179 0.83660 0.77569 1.19643 1.21051 1.20950 1.21318 0.93205 0.91016 1.50447 0.92462 1.19105 0.93820 0.90952 0.97339 1.21316 0.98953 0.91841 1.01126 1.27677 1.11568 1.10838 1.07125 1.70659 0.88018 0.85506 1.12396 1.93098 1.56208 1.83992 1.51060 1.26869 1.10172 1.11095 1.07851 1.22717 0.98138 0.93901 0.98596 1.21683 0.99787 0.93453 0.99286 1.19096 0.96776 0.94847 0.94342 1.21397 0.96555 0.97457 0.98195 1.21104 0.99192 0.94694 0.98577 1.21209 0.99417 0.99629 0.94074 1.21097 0.96936 0.97326 0.98456 1.21282 0.99405 0.94327 0.97873 0.93052 0.96760 0.96243 0.92071 0.92827 0.90116 0.86832 0.88578 0.86091 0.86528 0.85662 0.85758 0.86016 0.86205 0.86010 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.09 -1.91 5.16 -26.73 -0.14 -2.05 16 11 C -0.43 -6.79 5.92 37.16 0.22 -6.57 16 12 S 1.23 15.69 13.14 -107.50 -1.41 14.27 16 13 O -0.85 -16.29 18.14 -35.23 -0.64 -16.93 16 14 C -0.43 -4.32 6.37 36.01 0.23 -4.09 16 15 C -0.11 -1.17 8.94 -36.22 -0.32 -1.50 16 16 C -0.12 -1.09 9.52 -37.58 -0.36 -1.45 16 17 C -0.05 -0.48 5.87 -105.01 -0.62 -1.10 16 18 C -0.12 -1.13 9.40 -39.20 -0.37 -1.50 16 19 C -0.12 -0.99 10.03 -39.64 -0.40 -1.39 16 20 C -0.13 -0.96 10.04 -39.50 -0.40 -1.35 16 21 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 22 C -0.11 -0.91 9.79 -39.19 -0.38 -1.29 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 29 H 0.11 1.48 8.14 -51.92 -0.42 1.06 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.12 0.88 7.81 -51.93 -0.41 0.48 16 32 H 0.12 1.28 6.04 -52.49 -0.32 0.96 16 33 H 0.13 0.86 7.87 -52.49 -0.41 0.44 16 34 H 0.12 1.14 6.17 -52.48 -0.32 0.81 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -36.24 339.20 -10.36 -46.60 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.65 Total: -2.74 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: -3.48 Total: -36.77 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.64 Total: -16.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 15.69 SS G_CDS: -1.41 Total: 14.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.24 -10.36 -46.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172820206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.319 kcal (2) G-P(sol) polarization free energy of solvation -36.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds