Wall clock time and date at job start Mon Mar 30 2020 23:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48503 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46971 * 299.99985 * 3 2 1 6 6 H 1.48500 * 109.46992 * 60.00127 * 3 2 1 7 7 C 1.37876 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47023 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.47014 * 179.97438 * 11 10 9 13 13 O 1.42095 * 109.46478 * 296.38760 * 12 11 10 14 14 C 1.81403 * 102.99874 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.46673 * 179.97438 * 14 12 11 16 16 C 1.32566 * 119.99689 * 115.27730 * 15 14 12 17 17 C 1.47810 * 119.99639 * 179.72067 * 16 15 14 18 18 C 1.39535 * 120.14481 * 359.72282 * 17 16 15 19 19 C 1.37971 * 119.85935 * 179.67223 * 18 17 16 20 20 C 1.38348 * 120.13862 * 0.63019 * 19 18 17 21 21 C 1.38340 * 120.28531 * 359.67095 * 20 19 18 22 22 C 1.37971 * 120.14732 * 0.02562 * 21 20 19 23 23 H 0.97001 * 119.99608 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47429 * 59.99702 * 9 7 2 25 25 H 1.09003 * 109.47080 * 299.99555 * 9 7 2 26 26 H 1.08999 * 109.47364 * 59.99493 * 10 9 7 27 27 H 1.09003 * 109.46655 * 299.99646 * 10 9 7 28 28 H 1.08999 * 109.47348 * 59.99625 * 11 10 9 29 29 H 1.09003 * 109.47232 * 299.99435 * 11 10 9 30 30 H 1.08997 * 109.47025 * 60.00243 * 14 12 11 31 31 H 1.08995 * 109.47091 * 299.99957 * 14 12 11 32 32 H 1.08002 * 119.99761 * 294.99456 * 15 14 12 33 33 H 1.08002 * 120.00487 * 359.72336 * 16 15 14 34 34 H 1.08005 * 120.06828 * 359.97438 * 18 17 16 35 35 H 1.07997 * 119.93254 * 180.32026 * 19 18 17 36 36 H 1.08004 * 119.85526 * 179.69476 * 20 19 18 37 37 H 1.08000 * 119.92782 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.07979 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6590 -6.3659 -0.0025 13 8 3.4193 -6.3385 -1.2026 14 6 1.5806 -7.8247 -0.0023 15 6 2.4246 -9.0731 -0.0033 16 6 2.3903 -9.8971 1.0346 17 6 3.2134 -11.1248 1.0310 18 6 4.0232 -11.4223 -0.0657 19 6 4.7942 -12.5665 -0.0600 20 6 4.7559 -13.4246 1.0244 21 6 3.9504 -13.1386 2.1122 22 6 3.1792 -11.9946 2.1217 23 1 -0.4849 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8713 -3.6048 0.8890 27 1 2.8725 -3.6040 -0.8910 28 1 0.8538 -5.0447 -0.8922 29 1 0.8532 -5.0450 0.8878 30 1 0.9512 -7.8113 -0.8921 31 1 0.9517 -7.8114 0.8879 32 1 3.0538 -9.2989 -0.8515 33 1 1.7609 -9.6715 1.8828 34 1 4.0500 -10.7559 -0.9152 35 1 5.4253 -12.7952 -0.9061 36 1 5.3576 -14.3215 1.0220 37 1 3.9252 -13.8124 2.9559 38 1 2.5511 -11.7722 2.9716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172820206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:09 Heat of formation + Delta-G solvation = -41.515121 kcal Electronic energy + Delta-G solvation = -17449.618122 eV Core-core repulsion = 14575.233759 eV Total energy + Delta-G solvation = -2874.384363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.04437 -36.81792 -36.31967 -36.05432 -34.02386 -31.97305 -31.73573 -29.44676 -27.68134 -25.38331 -23.86854 -22.95059 -22.05311 -20.24241 -18.71951 -18.33638 -17.93822 -16.67518 -16.46709 -16.31710 -16.10894 -15.78970 -15.52394 -15.04201 -14.55710 -14.37379 -14.19703 -14.01698 -13.82917 -13.73343 -13.37648 -12.99312 -12.72538 -12.58334 -12.47263 -12.40179 -12.06443 -11.81980 -11.72419 -11.61646 -11.39966 -11.24424 -10.64836 -10.57864 -9.83445 -9.35683 -8.82047 -8.22168 -6.33507 -0.11012 0.52841 0.62885 1.38951 1.39598 1.53278 1.64853 1.81965 2.39921 2.85264 3.04519 3.10642 3.67179 3.87822 4.06390 4.11748 4.15532 4.21195 4.27405 4.34481 4.52494 4.60126 4.63370 4.70300 4.86169 4.87096 5.10284 5.15633 5.17106 5.18867 5.39546 5.49258 5.51063 5.64315 5.68726 5.69258 5.82670 5.89507 6.13547 6.22340 6.83412 7.35864 8.89529 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.051936 B = 0.002330 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.995067 B =12015.362052 C =12148.911623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.089 4.089 11 C -0.438 4.438 12 S 1.291 4.709 13 O -0.918 6.918 14 C -0.409 4.409 15 C -0.146 4.146 16 C -0.096 4.096 17 C -0.077 4.077 18 C -0.138 4.138 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.112 4.112 23 H 0.264 0.736 24 H -0.020 1.020 25 H 0.009 0.991 26 H 0.085 0.915 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 -27.643 8.658 29.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.576 4.576 12 S 1.495 4.505 13 O -0.914 6.914 14 C -0.546 4.546 15 C -0.166 4.166 16 C -0.116 4.116 17 C -0.077 4.077 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.130 4.130 23 H 0.073 0.927 24 H -0.002 1.002 25 H 0.028 0.972 26 H 0.104 0.896 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.117 0.883 33 H 0.173 0.827 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.812 -27.468 8.608 29.580 hybrid contribution -1.277 1.133 -2.536 3.057 sum 5.535 -26.335 6.072 27.587 Atomic orbital electron populations 1.70099 1.07745 1.27753 1.51710 1.26007 0.95850 1.03438 0.94691 0.85384 0.79063 0.78648 0.77880 1.18651 1.20722 1.19735 1.21784 0.93660 0.92545 1.50526 0.92208 1.19034 0.94332 0.92728 0.95076 1.21121 0.98003 0.92496 1.01147 1.27696 1.12052 1.09952 1.07851 1.69837 0.86378 0.84676 1.09655 1.92976 1.59544 1.85349 1.53498 1.26686 1.09570 1.08783 1.09559 1.22591 0.99738 0.94966 0.99277 1.21978 0.98320 0.92201 0.99088 1.19323 0.97593 0.95764 0.95011 1.21551 0.97487 0.98078 0.98507 1.21346 0.99408 0.94675 0.99580 1.21559 0.99301 1.00010 0.93676 1.21476 0.96296 0.97516 0.99099 1.21609 0.99386 0.94024 0.97948 0.92719 1.00210 0.97227 0.89627 0.95224 0.91950 0.83602 0.89481 0.81960 0.88323 0.82683 0.86574 0.84948 0.84079 0.83523 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.71 5.16 30.60 0.16 -3.55 16 11 C -0.44 -13.59 5.92 71.98 0.43 -13.16 16 12 S 1.29 32.01 13.14 -56.49 -0.74 31.27 16 13 O -0.92 -36.31 18.14 -148.98 -2.70 -39.01 16 14 C -0.41 -7.49 6.37 71.24 0.45 -7.04 16 15 C -0.15 -2.83 8.94 24.53 0.22 -2.61 16 16 C -0.10 -1.47 9.52 23.65 0.23 -1.25 16 17 C -0.08 -1.33 5.87 -20.12 -0.12 -1.45 16 18 C -0.14 -2.62 9.40 22.52 0.21 -2.41 16 19 C -0.13 -2.13 10.03 22.23 0.22 -1.90 16 20 C -0.13 -1.69 10.04 22.32 0.22 -1.46 16 21 C -0.13 -1.54 10.03 22.23 0.22 -1.32 16 22 C -0.11 -1.51 9.79 22.52 0.22 -1.29 16 23 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 24 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.15 3.50 8.14 -2.39 -0.02 3.48 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.16 1.65 7.81 -2.39 -0.02 1.63 16 32 H 0.10 2.25 6.04 -2.91 -0.02 2.23 16 33 H 0.16 1.41 7.87 -2.91 -0.02 1.39 16 34 H 0.12 2.28 6.17 -2.91 -0.02 2.26 16 35 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -81.41 339.20 3.20 -78.22 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.02 Total: 6.77 kcal Atomic # 6 Polarization: -70.49 SS G_CDS: 3.31 Total: -67.18 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.28 Total: -57.01 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.70 Total: -39.01 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 32.01 SS G_CDS: -0.74 Total: 31.27 kcal Total: -81.41 3.20 -78.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172820206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.701 kcal (2) G-P(sol) polarization free energy of solvation -81.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds