Wall clock time and date at job start Mon Mar 30 2020 23:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.42108 * 109.46797 * 63.60985 * 12 11 10 14 14 C 1.81393 * 103.00232 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47513 * 179.97438 * 14 12 11 16 16 C 1.32565 * 119.99684 * 114.99999 * 15 14 12 17 17 C 1.47816 * 119.99884 * 180.02562 * 16 15 14 18 18 C 1.39533 * 120.14031 * 359.71779 * 17 16 15 19 19 C 1.37974 * 119.85538 * 179.67867 * 18 17 16 20 20 C 1.38347 * 120.13936 * 0.62493 * 19 18 17 21 21 C 1.38343 * 120.28476 * 359.67958 * 20 19 18 22 22 C 1.37973 * 120.14516 * 359.97438 * 21 20 19 23 23 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 25 25 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 26 26 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 27 27 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 28 28 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 29 29 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 30 30 H 1.09001 * 109.47259 * 300.00509 * 14 12 11 31 31 H 1.09010 * 109.47052 * 60.00011 * 14 12 11 32 32 H 1.07996 * 120.00061 * 295.00512 * 15 14 12 33 33 H 1.07996 * 120.00255 * 0.02562 * 16 15 14 34 34 H 1.07997 * 120.07167 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.93199 * 180.32736 * 19 18 17 36 36 H 1.08004 * 119.86024 * 179.69300 * 20 19 18 37 37 H 1.08008 * 119.92680 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.07500 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 16 6.1564 -4.3466 0.0028 13 8 5.7538 -4.9918 -1.1976 14 6 7.9588 -4.1422 0.0035 15 6 8.6181 -5.4973 0.0047 16 6 9.3449 -5.8817 -1.0353 17 6 9.9911 -7.2111 -1.0344 18 6 9.8431 -8.0613 0.0620 19 6 10.4434 -9.3036 0.0538 20 6 11.2015 -9.7016 -1.0329 21 6 11.3574 -8.8607 -2.1203 22 6 10.7564 -7.6187 -2.1276 23 1 -0.4849 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 3.6587 -3.1502 -0.8892 27 1 3.6580 -3.1505 0.8907 28 1 5.9157 -2.1223 -0.8873 29 1 5.9142 -2.1228 0.8927 30 1 8.2622 -3.5908 -0.8864 31 1 8.2615 -3.5904 0.8936 32 1 8.4985 -6.1553 0.8527 33 1 9.4647 -5.2236 -1.8831 34 1 9.2559 -7.7497 0.9131 35 1 10.3253 -9.9648 0.8995 36 1 11.6736 -10.6730 -1.0324 37 1 11.9502 -9.1774 -2.9658 38 1 10.8785 -6.9633 -2.9773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172820210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:13 Heat of formation + Delta-G solvation = -14.882909 kcal Electronic energy + Delta-G solvation = -17529.194091 eV Core-core repulsion = 14655.964587 eV Total energy + Delta-G solvation = -2873.229504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.44873 -35.56608 -35.32292 -34.56183 -32.08708 -31.33664 -31.11708 -28.14408 -26.92542 -23.49245 -23.08096 -22.22879 -20.27889 -19.59119 -17.54275 -17.28490 -16.68677 -15.79507 -15.41597 -15.20442 -14.90863 -14.63711 -14.27326 -13.98890 -13.70424 -13.35674 -13.22809 -12.99202 -12.76794 -12.30402 -12.11994 -11.88237 -11.69682 -11.41358 -11.17244 -11.13333 -10.85721 -10.74208 -10.34789 -9.95788 -9.78027 -9.47045 -9.23488 -9.20349 -8.55134 -8.39515 -7.95802 -6.05142 -4.03425 0.59613 1.12848 1.55182 2.39378 2.77313 3.29175 3.36354 3.39038 3.66385 3.92302 4.34430 4.43650 4.49913 4.67867 4.76762 4.84563 5.02495 5.13902 5.17956 5.27682 5.29350 5.35376 5.46539 5.54699 5.67836 5.75261 6.01879 6.05299 6.14069 6.22470 6.36084 6.37836 6.49471 6.54939 6.70953 6.83040 7.24186 7.37748 7.77191 8.52639 8.99962 9.56944 11.08304 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.054484 B = 0.002438 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.792252 B =11479.736309 C =11628.626285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.085 4.085 11 C -0.439 4.439 12 S 1.237 4.763 13 O -0.842 6.842 14 C -0.427 4.427 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.049 4.049 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.112 4.112 23 H 0.263 0.737 24 H 0.019 0.981 25 H 0.009 0.991 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.537 -15.633 3.564 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.578 4.578 12 S 1.437 4.563 13 O -0.837 6.837 14 C -0.561 4.561 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.049 4.049 18 C -0.135 4.135 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.130 4.130 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 23.862 -16.353 3.548 29.144 hybrid contribution 1.114 2.256 -1.946 3.181 sum 24.976 -14.097 1.602 28.725 Atomic orbital electron populations 1.69913 1.06269 1.26880 1.51086 1.25041 0.94754 0.99174 0.94596 0.86769 0.80324 0.83650 0.78458 1.20430 1.21314 1.19024 1.21167 0.89470 0.94595 1.50842 0.90874 1.19571 0.97094 0.91731 0.96318 1.21128 0.88219 1.01125 1.01957 1.27731 1.05988 1.17028 1.07029 1.70586 0.84365 0.88795 1.12553 1.93131 1.75040 1.64607 1.50923 1.26905 1.21536 0.99883 1.07780 1.22682 0.96860 0.95351 0.98734 1.21690 0.98889 0.94588 0.98963 1.19077 0.97314 0.94062 0.94446 1.21350 0.99942 0.94098 0.98115 1.21101 0.97611 0.96249 0.98570 1.21212 0.99348 0.99729 0.94062 1.21097 0.99885 0.94233 0.98504 1.21291 0.97289 0.96597 0.97850 0.92720 0.96289 0.97271 0.92249 0.91454 0.90148 0.86833 0.89428 0.85444 0.85582 0.86644 0.85518 0.85852 0.86138 0.86022 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.20 4.04 -27.88 -0.11 -0.31 16 10 C -0.09 -1.67 5.16 -26.73 -0.14 -1.80 16 11 C -0.44 -6.38 5.92 37.16 0.22 -6.16 16 12 S 1.24 14.81 13.14 -107.50 -1.41 13.40 16 13 O -0.84 -15.92 18.14 -35.23 -0.64 -16.56 16 14 C -0.43 -4.05 6.37 36.01 0.23 -3.82 16 15 C -0.12 -1.14 8.94 -36.22 -0.32 -1.46 16 16 C -0.12 -1.31 9.52 -37.57 -0.36 -1.67 16 17 C -0.05 -0.51 5.87 -105.01 -0.62 -1.13 16 18 C -0.12 -1.07 9.40 -39.20 -0.37 -1.44 16 19 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 20 C -0.13 -0.99 10.04 -39.50 -0.40 -1.39 16 21 C -0.12 -1.00 10.03 -39.64 -0.40 -1.39 16 22 C -0.11 -1.08 9.79 -39.20 -0.38 -1.46 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 25 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 29 H 0.11 1.31 8.14 -51.92 -0.42 0.89 16 30 H 0.09 0.93 7.81 -51.92 -0.41 0.52 16 31 H 0.13 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.13 0.91 6.04 -52.49 -0.32 0.59 16 33 H 0.12 1.24 7.87 -52.49 -0.41 0.83 16 34 H 0.13 0.91 6.17 -52.49 -0.32 0.59 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -37.41 335.60 -9.98 -47.39 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.62 Total: -2.20 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: -3.47 Total: -36.96 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.64 Total: -16.56 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 14.81 SS G_CDS: -1.41 Total: 13.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.41 -9.98 -47.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172820210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.509 kcal (2) G-P(sol) polarization free energy of solvation -37.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds