Wall clock time and date at job start Mon Mar 30 2020 23:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.42108 * 109.46797 * 63.60985 * 12 11 10 14 14 C 1.81393 * 103.00232 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47513 * 179.97438 * 14 12 11 16 16 C 1.32565 * 119.99684 * 114.99999 * 15 14 12 17 17 C 1.47816 * 119.99884 * 180.02562 * 16 15 14 18 18 C 1.39533 * 120.14031 * 359.71779 * 17 16 15 19 19 C 1.37974 * 119.85538 * 179.67867 * 18 17 16 20 20 C 1.38347 * 120.13936 * 0.62493 * 19 18 17 21 21 C 1.38343 * 120.28476 * 359.67958 * 20 19 18 22 22 C 1.37973 * 120.14516 * 359.97438 * 21 20 19 23 23 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 25 25 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 26 26 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 27 27 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 28 28 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 29 29 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 30 30 H 1.09001 * 109.47259 * 300.00509 * 14 12 11 31 31 H 1.09010 * 109.47052 * 60.00011 * 14 12 11 32 32 H 1.07996 * 120.00061 * 295.00512 * 15 14 12 33 33 H 1.07996 * 120.00255 * 0.02562 * 16 15 14 34 34 H 1.07997 * 120.07167 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.93199 * 180.32736 * 19 18 17 36 36 H 1.08004 * 119.86024 * 179.69300 * 20 19 18 37 37 H 1.08008 * 119.92680 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.07500 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 16 6.1564 -4.3466 0.0028 13 8 5.7538 -4.9918 -1.1976 14 6 7.9588 -4.1422 0.0035 15 6 8.6181 -5.4973 0.0047 16 6 9.3449 -5.8817 -1.0353 17 6 9.9911 -7.2111 -1.0344 18 6 9.8431 -8.0613 0.0620 19 6 10.4434 -9.3036 0.0538 20 6 11.2015 -9.7016 -1.0329 21 6 11.3574 -8.8607 -2.1203 22 6 10.7564 -7.6187 -2.1276 23 1 -0.4849 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 3.6587 -3.1502 -0.8892 27 1 3.6580 -3.1505 0.8907 28 1 5.9157 -2.1223 -0.8873 29 1 5.9142 -2.1228 0.8927 30 1 8.2622 -3.5908 -0.8864 31 1 8.2615 -3.5904 0.8936 32 1 8.4985 -6.1553 0.8527 33 1 9.4647 -5.2236 -1.8831 34 1 9.2559 -7.7497 0.9131 35 1 10.3253 -9.9648 0.8995 36 1 11.6736 -10.6730 -1.0324 37 1 11.9502 -9.1774 -2.9658 38 1 10.8785 -6.9633 -2.9773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172820210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:12 Heat of formation + Delta-G solvation = -39.076605 kcal Electronic energy + Delta-G solvation = -17530.243209 eV Core-core repulsion = 14655.964587 eV Total energy + Delta-G solvation = -2874.278621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07503 -36.81189 -36.34734 -36.05932 -34.13772 -31.99130 -31.76672 -29.91915 -27.71469 -25.10904 -23.86859 -22.95462 -21.95913 -20.36688 -18.99116 -18.35599 -18.02814 -16.62619 -16.49097 -16.33779 -15.99440 -15.92348 -15.44652 -15.06666 -14.81095 -14.43270 -14.19573 -14.01710 -13.92654 -13.84087 -13.37001 -13.13098 -12.82878 -12.58985 -12.50577 -12.21976 -12.03708 -11.80227 -11.76788 -11.54746 -11.38005 -11.33466 -10.78315 -10.70701 -9.86588 -9.32691 -8.85177 -8.30358 -6.35241 -0.12695 0.49685 0.62274 1.35014 1.36601 1.49089 1.62383 1.83206 2.35275 2.89025 3.01521 3.04607 3.60903 3.84063 4.04195 4.09036 4.15593 4.18350 4.22202 4.33516 4.48162 4.57377 4.57641 4.64151 4.80973 4.86617 5.02651 5.06004 5.09443 5.14498 5.35164 5.46539 5.49369 5.54666 5.61103 5.65183 5.66645 5.83330 6.10119 6.27050 6.73084 7.29280 8.86598 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.054484 B = 0.002438 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.792252 B =11479.736309 C =11628.626285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.030 0.970 9 C -0.009 4.009 10 C -0.087 4.087 11 C -0.440 4.440 12 S 1.292 4.708 13 O -0.917 6.917 14 C -0.415 4.415 15 C -0.122 4.122 16 C -0.138 4.138 17 C -0.073 4.073 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.133 4.133 23 H 0.266 0.734 24 H 0.039 0.961 25 H 0.006 0.994 26 H 0.025 0.975 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.173 0.827 32 H 0.154 0.846 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.585 -15.362 5.381 32.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.126 4.126 11 C -0.578 4.578 12 S 1.495 4.505 13 O -0.913 6.913 14 C -0.552 4.552 15 C -0.141 4.141 16 C -0.159 4.159 17 C -0.073 4.073 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.151 4.151 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.025 0.975 26 H 0.044 0.956 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.097 0.903 31 H 0.190 0.810 32 H 0.171 0.829 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 26.887 -16.089 5.365 31.789 hybrid contribution 0.216 2.046 -2.516 3.250 sum 27.103 -14.043 2.849 30.658 Atomic orbital electron populations 1.70080 1.08403 1.28220 1.52589 1.26115 0.95722 1.03830 0.94079 0.85596 0.79910 0.77855 0.78886 1.20083 1.20664 1.15914 1.21581 0.92455 0.93142 1.50520 0.95203 1.19562 0.93572 0.94781 0.96843 1.20995 0.92122 0.98217 1.01226 1.27702 1.02119 1.19323 1.08612 1.69748 0.85317 0.85788 1.09677 1.93011 1.78135 1.66676 1.53498 1.26816 1.18207 1.00535 1.09613 1.22980 0.96201 0.95651 0.99284 1.21818 0.99949 0.95034 0.99108 1.19257 0.98243 0.94365 0.95474 1.21641 1.00299 0.94424 0.98270 1.21465 0.97006 0.96223 0.99409 1.21589 0.98952 1.00582 0.93671 1.21391 0.99836 0.93848 0.99481 1.21506 0.97956 0.97522 0.98109 0.92481 0.94234 0.97521 0.95609 0.89889 0.91134 0.82663 0.90347 0.80968 0.82888 0.87721 0.83796 0.83450 0.83786 0.84223 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 2 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 3 Si 0.95 44.39 27.47 68.60 1.88 46.28 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 7 C -0.54 -31.83 9.66 25.60 0.25 -31.58 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.09 -3.36 5.16 30.60 0.16 -3.20 16 11 C -0.44 -11.71 5.92 71.98 0.43 -11.28 16 12 S 1.29 28.69 13.14 -56.49 -0.74 27.94 16 13 O -0.92 -35.11 18.14 -148.98 -2.70 -37.82 16 14 C -0.42 -6.58 6.37 71.24 0.45 -6.12 16 15 C -0.12 -2.10 8.94 24.53 0.22 -1.88 16 16 C -0.14 -2.91 9.52 23.66 0.23 -2.68 16 17 C -0.07 -1.49 5.87 -20.12 -0.12 -1.61 16 18 C -0.13 -2.14 9.40 22.52 0.21 -1.93 16 19 C -0.12 -1.73 10.03 22.23 0.22 -1.51 16 20 C -0.13 -1.80 10.04 22.32 0.22 -1.57 16 21 C -0.13 -2.00 10.03 22.23 0.22 -1.78 16 22 C -0.13 -2.55 9.79 22.52 0.22 -2.32 16 23 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 24 H 0.04 1.69 7.20 -2.39 -0.02 1.67 16 25 H 0.01 0.30 7.57 -2.39 -0.02 0.29 16 26 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.16 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.08 1.48 7.81 -2.39 -0.02 1.46 16 31 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.15 1.71 6.04 -2.91 -0.02 1.69 16 33 H 0.10 2.31 7.87 -2.91 -0.02 2.29 16 34 H 0.14 1.71 6.17 -2.91 -0.02 1.69 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -85.39 335.60 3.00 -82.39 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.97 Total: 9.11 kcal Atomic # 6 Polarization: -70.67 SS G_CDS: 3.30 Total: -67.37 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.30 Total: -60.53 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -2.70 Total: -37.82 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Atomic # 16 Polarization: 28.69 SS G_CDS: -0.74 Total: 27.94 kcal Total: -85.39 3.00 -82.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172820210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.311 kcal (2) G-P(sol) polarization free energy of solvation -85.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds