Wall clock time and date at job start Tue Mar 31 2020 00:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00046 * 2 1 4 4 O 1.20829 * 119.99671 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00152 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47384 * 180.02562 * 5 3 2 7 7 C 1.36872 * 119.99655 * 270.00085 * 6 5 3 8 8 H 1.08002 * 120.00455 * 19.16034 * 7 6 5 9 9 C 1.39047 * 120.00140 * 199.15508 * 7 6 5 10 10 N 1.31369 * 119.99793 * 15.97109 * 9 7 6 11 11 Si 1.86802 * 120.00170 * 195.96948 * 9 7 6 12 12 H 1.48499 * 109.46976 * 65.00409 * 11 9 7 13 13 H 1.48502 * 109.46866 * 184.99744 * 11 9 7 14 14 H 1.48497 * 109.47182 * 305.00090 * 11 9 7 15 15 C 1.34769 * 120.00252 * 89.99788 * 6 5 3 16 16 O 1.21596 * 120.00162 * 242.73349 * 15 6 5 17 17 C 1.47719 * 120.00122 * 62.73355 * 15 6 5 18 18 C 1.40088 * 120.56794 * 21.70425 * 17 15 6 19 19 C 1.38333 * 118.28664 * 180.21603 * 18 17 15 20 20 C 1.38367 * 119.30954 * 359.51707 * 19 18 17 21 21 N 1.31941 * 121.09366 * 0.24341 * 20 19 18 22 22 C 1.31682 * 121.88352 * 0.02562 * 21 20 19 23 23 C 1.50704 * 119.71878 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47224 * 299.99762 * 1 2 3 25 25 H 1.09004 * 109.47343 * 60.00123 * 1 2 3 26 26 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47139 * 60.00049 * 5 3 2 28 28 H 1.09008 * 109.47335 * 300.00098 * 5 3 2 29 29 H 0.96996 * 119.99687 * 184.94909 * 10 9 7 30 30 H 1.08004 * 120.85409 * 359.97438 * 18 17 15 31 31 H 1.08000 * 120.34603 * 179.78506 * 19 18 17 32 32 H 1.07998 * 119.45680 * 180.23484 * 20 19 18 33 33 H 1.09000 * 109.47074 * 95.77862 * 23 22 21 34 34 H 1.08995 * 109.47039 * 215.78297 * 23 22 21 35 35 H 1.09000 * 109.47007 * 335.78184 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1761 3.3363 -1.1841 8 1 3.7417 2.9488 -2.0938 9 6 4.9330 4.5023 -1.2170 10 7 5.7131 4.8077 -0.2051 11 14 4.8404 5.6344 -2.6999 12 1 3.4727 6.2034 -2.8037 13 1 5.8242 6.7359 -2.5439 14 1 5.1508 4.8641 -3.9309 15 6 4.1723 3.3258 1.1684 16 8 3.4792 4.2833 1.4537 17 6 5.2232 2.8706 2.1014 18 6 6.3007 2.1028 1.6412 19 6 7.2556 1.6981 2.5566 20 6 7.1227 2.0693 3.8829 21 7 6.0995 2.7975 4.2874 22 6 5.1623 3.2027 3.4559 23 6 4.0143 4.0322 3.9710 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9563 0.7806 -0.8891 28 1 3.9557 0.7809 0.8909 29 1 6.1856 5.6547 -0.1955 30 1 6.3817 1.8305 0.5992 31 1 8.0983 1.1021 2.2386 32 1 7.8689 1.7579 4.5989 33 1 4.2307 5.0890 3.8144 34 1 3.1036 3.7646 3.4353 35 1 3.8784 3.8431 5.0358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173080170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:41 Heat of formation + Delta-G solvation = -55.786420 kcal Electronic energy + Delta-G solvation = -22274.504965 eV Core-core repulsion = 18853.208538 eV Total energy + Delta-G solvation = -3421.296428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.11209 -39.63323 -37.95416 -35.91044 -34.58007 -32.31749 -32.00157 -31.44442 -28.55458 -27.25500 -26.41185 -24.92739 -23.27505 -21.49004 -20.90727 -19.67430 -17.35000 -17.11351 -16.51178 -16.02564 -15.93743 -15.52874 -15.19051 -14.89660 -14.24902 -13.93395 -13.68687 -13.31950 -13.04333 -12.92131 -12.47104 -11.98846 -11.82989 -11.76835 -11.64966 -11.54340 -11.40715 -11.16931 -10.95954 -10.58514 -10.38162 -10.27921 -10.01396 -9.21966 -9.13634 -9.10189 -8.51469 -8.28577 -7.61430 -6.28714 -3.73076 1.42899 1.85296 2.84586 3.08530 3.23979 3.32963 3.36561 3.76800 4.21454 4.49169 4.69024 4.87608 5.15480 5.31697 5.32964 5.38912 5.40730 5.49055 5.61668 5.63081 5.71596 5.83177 5.93991 6.06697 6.21490 6.29049 6.36056 6.65135 6.75476 6.85373 6.89387 7.24991 7.44909 7.93014 8.38893 8.47673 8.83959 9.10824 9.33048 9.78555 10.84150 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.009514 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.707013 B = 2942.282617 C = 4483.646028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.372 6.372 3 C 0.420 3.580 4 O -0.480 6.480 5 C 0.145 3.855 6 N -0.527 5.527 7 C -0.294 4.294 8 H 0.084 0.916 9 C 0.032 3.968 10 N -0.880 5.880 11 Si 0.920 3.080 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.623 3.377 16 O -0.494 6.494 17 C -0.143 4.143 18 C -0.013 4.013 19 C -0.198 4.198 20 C 0.099 3.901 21 N -0.500 5.500 22 C 0.158 3.842 23 C -0.094 4.094 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.271 0.729 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -10.283 3.076 10.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.290 6.290 3 C 0.259 3.741 4 O -0.363 6.363 5 C 0.016 3.984 6 N -0.255 5.255 7 C -0.420 4.420 8 H 0.102 0.898 9 C -0.171 4.171 10 N -0.521 5.521 11 Si 0.748 3.252 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.414 3.586 16 O -0.367 6.367 17 C -0.150 4.150 18 C -0.040 4.040 19 C -0.218 4.218 20 C -0.058 4.058 21 N -0.210 5.210 22 C 0.019 3.981 23 C -0.152 4.152 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.832 -9.030 4.136 9.967 hybrid contribution 0.057 0.554 -1.768 1.854 sum -0.775 -8.476 2.368 8.834 Atomic orbital electron populations 1.23103 0.77941 1.02658 1.02151 1.86536 1.22366 1.34969 1.85085 1.25857 0.94108 0.81113 0.73032 1.90700 1.66612 1.36141 1.42895 1.20460 0.85997 0.87405 1.04555 1.42208 1.71290 1.06974 1.05033 1.19133 1.28436 1.09236 0.85175 0.89823 1.25017 0.94280 0.99084 0.98721 1.69379 1.26965 1.22997 1.32735 0.86101 0.78001 0.80086 0.81051 1.20326 1.21201 1.20196 1.17179 0.80479 0.81697 0.79247 1.90528 1.44496 1.28734 1.72936 1.21359 0.99108 0.99836 0.94666 1.21772 0.91126 0.90974 1.00080 1.21993 1.00981 1.04135 0.94733 1.22653 0.94981 0.93857 0.94348 1.67467 1.02687 1.12095 1.38750 1.21434 0.94097 0.93459 0.89063 1.20747 0.95158 0.99275 0.99979 0.92478 0.92399 0.88862 0.87258 0.89040 0.91773 0.84059 0.85318 0.83498 0.90127 0.89829 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.01 10.57 -39.26 -0.41 -6.42 16 3 C 0.42 8.25 8.02 36.00 0.29 8.54 16 4 O -0.48 -11.46 16.18 -18.75 -0.30 -11.77 16 5 C 0.14 2.71 5.93 -5.19 -0.03 2.67 16 6 N -0.53 -12.61 1.53 -117.21 -0.18 -12.79 16 7 C -0.29 -7.63 9.61 -15.00 -0.14 -7.78 16 8 H 0.08 2.10 7.88 -52.49 -0.41 1.69 16 9 C 0.03 0.85 5.12 -17.45 -0.09 0.76 16 10 N -0.88 -24.24 11.12 55.50 0.62 -23.62 16 11 Si 0.92 21.42 29.59 -169.99 -5.03 16.39 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.62 15.62 3.61 -12.39 -0.04 15.58 16 16 O -0.49 -13.98 14.42 5.28 0.08 -13.90 16 17 C -0.14 -3.14 5.18 -104.82 -0.54 -3.68 16 18 C -0.01 -0.26 9.14 -38.85 -0.36 -0.61 16 19 C -0.20 -3.13 10.10 -39.50 -0.40 -3.52 16 20 C 0.10 1.58 11.17 -17.46 -0.20 1.38 16 21 N -0.50 -9.48 10.26 -9.12 -0.09 -9.57 16 22 C 0.16 3.27 6.82 -82.15 -0.56 2.71 16 23 C -0.09 -1.85 8.76 36.01 0.32 -1.54 16 24 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 25 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.11 1.75 8.04 -51.93 -0.42 1.33 16 28 H 0.09 1.49 7.35 -51.92 -0.38 1.11 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.14 2.70 7.81 -52.48 -0.41 2.29 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.08 1.75 6.30 -51.93 -0.33 1.43 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -33.54 311.50 -5.37 -38.91 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.04 Total: 2.03 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -0.69 Total: 16.04 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.34 Total: -45.98 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.64 Total: -32.09 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.54 -5.37 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173080170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.875 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds