Wall clock time and date at job start Tue Mar 31 2020 00:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38351 * 119.91088 * 2 1 4 4 C 1.38556 * 120.27834 * 180.02562 * 3 2 1 5 5 F 1.35101 * 119.95348 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.09978 * 359.67893 * 4 3 2 7 7 C 1.39583 * 119.81652 * 0.59835 * 6 4 3 8 8 C 1.47734 * 120.14000 * 179.69874 * 7 6 4 9 9 O 1.21469 * 120.00454 * 184.93797 * 8 7 6 10 10 O 1.34709 * 119.99688 * 4.93552 * 8 7 6 11 11 C 1.45197 * 116.99857 * 184.84977 * 10 8 7 12 12 C 1.53008 * 109.47307 * 183.83727 * 11 10 8 13 13 C 1.50702 * 115.54855 * 294.97193 * 12 11 10 14 14 H 1.07998 * 119.99854 * 114.76250 * 13 12 11 15 15 C 1.37871 * 119.99487 * 294.48340 * 13 12 11 16 16 N 1.31522 * 119.99860 * 174.28058 * 15 13 12 17 17 Si 1.86803 * 120.00575 * 354.28194 * 15 13 12 18 18 H 1.48497 * 109.46670 * 93.47127 * 17 15 13 19 19 H 1.48491 * 109.47279 * 213.47335 * 17 15 13 20 20 H 1.48501 * 109.46610 * 333.47408 * 17 15 13 21 21 C 1.53008 * 117.49719 * 80.63586 * 12 11 10 22 22 C 1.52993 * 117.50124 * 149.29651 * 12 11 10 23 23 C 1.37935 * 119.91117 * 180.02562 * 2 1 3 24 24 H 1.09009 * 109.46900 * 269.97367 * 1 2 3 25 25 H 1.08994 * 109.47492 * 29.96785 * 1 2 3 26 26 H 1.09000 * 109.47194 * 149.97769 * 1 2 3 27 27 H 1.08000 * 119.85801 * 0.02798 * 3 2 1 28 28 H 1.08001 * 120.09475 * 180.29720 * 6 4 3 29 29 H 1.08999 * 109.47207 * 63.84104 * 11 10 8 30 30 H 1.08997 * 109.47482 * 303.83530 * 11 10 8 31 31 H 0.97001 * 119.99976 * 179.97438 * 16 15 13 32 32 H 1.08999 * 117.49678 * 215.00716 * 21 12 11 33 33 H 1.08997 * 117.49639 * 0.02737 * 21 12 11 34 34 H 1.09001 * 117.49627 * 359.97438 * 22 12 11 35 35 H 1.09003 * 117.50224 * 144.97815 * 22 12 11 36 36 H 1.08000 * 120.05365 * 359.95664 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1992 0.0000 4 6 3.5824 1.2081 -0.0005 5 9 4.2494 2.3830 -0.0011 6 6 4.2831 0.0170 0.0056 7 6 3.5913 -1.1953 -0.0003 8 6 4.3332 -2.4729 -0.0004 9 8 3.7324 -3.5242 -0.0961 10 8 5.6761 -2.4718 0.1054 11 6 6.3474 -3.7540 -0.0104 12 6 7.8471 -3.5681 0.2298 13 6 8.5701 -2.7298 -0.7927 14 1 9.0050 -1.7839 -0.5055 15 6 8.6811 -3.1731 -2.0935 16 7 9.2118 -2.3940 -3.0107 17 14 8.0778 -4.8802 -2.5534 18 1 6.6780 -4.7954 -3.0419 19 1 8.9425 -5.4392 -3.6233 20 1 8.1332 -5.7627 -1.3604 21 6 8.3246 -3.4801 1.6808 22 6 8.6126 -4.7361 0.8546 23 6 2.1948 -1.1956 -0.0005 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6531 2.1324 0.0005 28 1 5.3631 0.0240 0.0101 29 1 6.1870 -4.1592 -1.0095 30 1 5.9436 -4.4438 0.7306 31 1 9.2902 -2.7060 -3.9258 32 1 9.1616 -2.8158 1.8957 33 1 7.5704 -3.5550 2.4642 34 1 8.0478 -5.6369 1.0950 35 1 9.6391 -4.8986 0.5259 36 1 1.6542 -2.1306 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174739973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:17 Heat of formation + Delta-G solvation = -83.686588 kcal Electronic energy + Delta-G solvation = -21051.366114 eV Core-core repulsion = 17608.939883 eV Total energy + Delta-G solvation = -3442.426232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -48.92338 -40.28642 -38.82673 -37.07870 -35.47689 -33.10687 -32.16592 -30.93339 -27.70078 -27.13108 -25.47350 -24.10451 -22.01392 -21.66542 -20.44862 -19.21123 -17.71952 -17.24415 -16.49814 -16.28998 -16.05195 -15.98584 -15.60782 -15.36552 -14.74271 -13.94442 -13.84822 -13.56874 -13.48214 -13.15341 -12.68602 -12.54743 -12.40338 -12.20353 -11.85538 -11.79223 -11.55871 -11.10420 -10.95060 -10.66324 -10.45227 -10.16999 -10.04198 -9.56753 -9.16437 -9.09098 -8.81144 -8.71634 -8.53066 -6.15106 -4.16021 0.54079 1.02177 2.60020 2.98060 3.23379 3.34416 3.38126 3.57583 4.04745 4.36378 4.44668 4.61344 4.82420 4.94286 4.97928 5.11077 5.18840 5.25332 5.33536 5.47673 5.59253 5.66948 5.83111 5.85717 5.90121 5.92596 6.08444 6.12926 6.17395 6.32731 6.43233 6.61827 6.66982 6.78834 7.01407 7.06924 7.66038 8.11494 8.45796 8.88563 9.47051 10.96632 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.004952 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.619427 B = 5652.956950 C = 5948.255075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 C -0.127 4.127 4 C 0.092 3.908 5 F -0.134 7.134 6 C -0.097 4.097 7 C -0.083 4.083 8 C 0.501 3.499 9 O -0.515 6.515 10 O -0.320 6.320 11 C 0.107 3.893 12 C -0.010 4.010 13 C -0.479 4.479 14 H 0.080 0.920 15 C 0.080 3.920 16 N -0.893 5.893 17 Si 0.858 3.142 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.248 1.248 21 C -0.175 4.175 22 C -0.180 4.180 23 C -0.071 4.071 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.160 0.840 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.265 0.735 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 4.305 6.893 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C -0.146 4.146 4 C 0.073 3.927 5 F -0.113 7.113 6 C -0.116 4.116 7 C -0.085 4.085 8 C 0.345 3.655 9 O -0.406 6.406 10 O -0.235 6.235 11 C 0.033 3.967 12 C -0.011 4.011 13 C -0.516 4.516 14 H 0.098 0.902 15 C -0.123 4.123 16 N -0.529 5.529 17 Si 0.685 3.315 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.172 1.172 21 C -0.212 4.212 22 C -0.218 4.218 23 C -0.089 4.089 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.177 0.823 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.258 4.035 6.676 17.136 hybrid contribution -0.090 -0.823 -0.519 0.977 sum -15.348 3.212 6.156 16.846 Atomic orbital electron populations 1.20798 0.89822 1.03404 1.02862 1.19626 0.96686 0.91601 0.99560 1.21231 0.92263 0.99434 1.01698 1.17509 0.90043 0.81338 1.03811 1.91534 1.80698 1.45085 1.93933 1.21654 1.02637 0.90009 0.97307 1.19023 0.93109 0.90895 1.05444 1.21058 0.82396 0.88763 0.73247 1.90784 1.70187 1.33259 1.46400 1.86630 1.18236 1.37644 1.80948 1.23036 0.92626 0.80525 1.00481 1.19337 0.88528 0.99183 0.94007 1.20220 1.34291 1.05448 0.91632 0.90154 1.24921 0.94373 0.96890 0.96126 1.69890 1.44667 1.36099 1.02272 0.87152 0.78719 0.86244 0.79340 1.20517 1.21350 1.17197 1.22797 1.02957 1.01122 0.94343 1.23084 1.01627 0.91522 1.05560 1.21207 0.92107 0.98886 0.96743 0.90627 0.91067 0.90865 0.84290 0.82261 0.91956 0.92871 0.92472 0.89265 0.90791 0.91039 0.88819 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.07 -0.78 5.87 -104.69 -0.61 -1.39 16 3 C -0.13 -1.37 9.67 -39.42 -0.38 -1.75 16 4 C 0.09 1.23 7.29 -39.48 -0.29 0.94 16 5 F -0.13 -1.87 17.26 2.25 0.04 -1.83 16 6 C -0.10 -1.48 9.60 -39.09 -0.38 -1.85 16 7 C -0.08 -1.32 5.87 -104.99 -0.62 -1.93 16 8 C 0.50 9.67 7.88 34.61 0.27 9.94 16 9 O -0.52 -10.63 16.08 -19.24 -0.31 -10.94 16 10 O -0.32 -6.88 9.42 -40.52 -0.38 -7.27 16 11 C 0.11 2.37 5.01 37.16 0.19 2.56 16 12 C -0.01 -0.22 1.06 -155.65 -0.17 -0.39 16 13 C -0.48 -13.17 9.33 -34.44 -0.32 -13.49 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 16 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 17 Si 0.86 21.13 24.98 -169.99 -4.25 16.89 16 18 H -0.28 -6.93 7.03 56.52 0.40 -6.53 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.25 -5.67 5.72 56.52 0.32 -5.34 16 21 C -0.18 -3.49 9.96 -26.69 -0.27 -3.76 16 22 C -0.18 -3.69 8.01 -26.70 -0.21 -3.91 16 23 C -0.07 -0.91 9.24 -39.17 -0.36 -1.28 16 24 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 26 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.16 2.59 7.62 -52.49 -0.40 2.19 16 29 H 0.06 1.48 5.08 -51.93 -0.26 1.21 16 30 H 0.05 1.07 7.96 -51.93 -0.41 0.66 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 32 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 36 H 0.14 1.72 7.66 -52.49 -0.40 1.31 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -30.85 315.43 -6.75 -37.60 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.50 Total: 1.41 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -2.88 Total: -14.55 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.69 Total: -18.21 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.25 Total: 16.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.85 -6.75 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174739973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.083 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds