Wall clock time and date at job start Tue Mar 31 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38351 * 119.91088 * 2 1 4 4 C 1.38556 * 120.27834 * 180.02562 * 3 2 1 5 5 F 1.35101 * 119.95348 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.09978 * 359.67893 * 4 3 2 7 7 C 1.39583 * 119.81652 * 0.59835 * 6 4 3 8 8 C 1.47734 * 120.14000 * 179.69874 * 7 6 4 9 9 O 1.21469 * 120.00454 * 184.93797 * 8 7 6 10 10 O 1.34709 * 119.99688 * 4.93552 * 8 7 6 11 11 C 1.45197 * 116.99857 * 184.84977 * 10 8 7 12 12 C 1.53008 * 109.47307 * 183.83727 * 11 10 8 13 13 C 1.50702 * 115.54855 * 294.97193 * 12 11 10 14 14 H 1.07998 * 119.99854 * 114.76250 * 13 12 11 15 15 C 1.37871 * 119.99487 * 294.48340 * 13 12 11 16 16 N 1.31522 * 119.99860 * 174.28058 * 15 13 12 17 17 Si 1.86803 * 120.00575 * 354.28194 * 15 13 12 18 18 H 1.48497 * 109.46670 * 93.47127 * 17 15 13 19 19 H 1.48491 * 109.47279 * 213.47335 * 17 15 13 20 20 H 1.48501 * 109.46610 * 333.47408 * 17 15 13 21 21 C 1.53008 * 117.49719 * 80.63586 * 12 11 10 22 22 C 1.52993 * 117.50124 * 149.29651 * 12 11 10 23 23 C 1.37935 * 119.91117 * 180.02562 * 2 1 3 24 24 H 1.09009 * 109.46900 * 269.97367 * 1 2 3 25 25 H 1.08994 * 109.47492 * 29.96785 * 1 2 3 26 26 H 1.09000 * 109.47194 * 149.97769 * 1 2 3 27 27 H 1.08000 * 119.85801 * 0.02798 * 3 2 1 28 28 H 1.08001 * 120.09475 * 180.29720 * 6 4 3 29 29 H 1.08999 * 109.47207 * 63.84104 * 11 10 8 30 30 H 1.08997 * 109.47482 * 303.83530 * 11 10 8 31 31 H 0.97001 * 119.99976 * 179.97438 * 16 15 13 32 32 H 1.08999 * 117.49678 * 215.00716 * 21 12 11 33 33 H 1.08997 * 117.49639 * 0.02737 * 21 12 11 34 34 H 1.09001 * 117.49627 * 359.97438 * 22 12 11 35 35 H 1.09003 * 117.50224 * 144.97815 * 22 12 11 36 36 H 1.08000 * 120.05365 * 359.95664 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1992 0.0000 4 6 3.5824 1.2081 -0.0005 5 9 4.2494 2.3830 -0.0011 6 6 4.2831 0.0170 0.0056 7 6 3.5913 -1.1953 -0.0003 8 6 4.3332 -2.4729 -0.0004 9 8 3.7324 -3.5242 -0.0961 10 8 5.6761 -2.4718 0.1054 11 6 6.3474 -3.7540 -0.0104 12 6 7.8471 -3.5681 0.2298 13 6 8.5701 -2.7298 -0.7927 14 1 9.0050 -1.7839 -0.5055 15 6 8.6811 -3.1731 -2.0935 16 7 9.2118 -2.3940 -3.0107 17 14 8.0778 -4.8802 -2.5534 18 1 6.6780 -4.7954 -3.0419 19 1 8.9425 -5.4392 -3.6233 20 1 8.1332 -5.7627 -1.3604 21 6 8.3246 -3.4801 1.6808 22 6 8.6126 -4.7361 0.8546 23 6 2.1948 -1.1956 -0.0005 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6531 2.1324 0.0005 28 1 5.3631 0.0240 0.0101 29 1 6.1870 -4.1592 -1.0095 30 1 5.9436 -4.4438 0.7306 31 1 9.2902 -2.7060 -3.9258 32 1 9.1616 -2.8158 1.8957 33 1 7.5704 -3.5550 2.4642 34 1 8.0478 -5.6369 1.0950 35 1 9.6391 -4.8986 0.5259 36 1 1.6542 -2.1306 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174739973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:16 Heat of formation + Delta-G solvation = -100.688084 kcal Electronic energy + Delta-G solvation = -21052.103354 eV Core-core repulsion = 17608.939883 eV Total energy + Delta-G solvation = -3443.163472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.00477 -41.71633 -40.00480 -38.74476 -37.10980 -34.31888 -34.04645 -31.98545 -29.27373 -28.05494 -27.43342 -25.43242 -23.28915 -23.02277 -21.77842 -21.09757 -19.01095 -18.89507 -18.06933 -17.64625 -17.30495 -17.17166 -16.84467 -16.76058 -16.54029 -15.56199 -15.02071 -14.74006 -14.54909 -14.48042 -14.34202 -14.09717 -13.90240 -13.11508 -13.03829 -12.92728 -12.74776 -12.72939 -12.61374 -12.31076 -12.15995 -11.82060 -11.73710 -11.44842 -11.02176 -10.66930 -10.43599 -10.15487 -9.82086 -8.33781 -6.38314 -0.58402 0.00219 1.25863 1.28703 1.32570 1.42813 1.55733 2.30273 2.44922 2.92007 2.99641 3.22570 3.48249 3.65148 3.88008 3.93879 3.95479 4.07880 4.09168 4.21452 4.37186 4.38786 4.58863 4.62794 4.79182 4.85476 4.88140 4.90581 4.93822 5.08159 5.15198 5.26222 5.30471 5.41937 5.46879 5.62737 5.69680 6.25991 6.57603 6.67598 7.27995 8.81907 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.004952 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.619427 B = 5652.956950 C = 5948.255075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.060 4.060 3 C -0.107 4.107 4 C 0.082 3.918 5 F -0.141 7.141 6 C -0.116 4.116 7 C -0.107 4.107 8 C 0.498 3.502 9 O -0.533 6.533 10 O -0.339 6.339 11 C 0.109 3.891 12 C -0.045 4.045 13 C -0.477 4.477 14 H 0.034 0.966 15 C 0.025 3.975 16 N -0.944 5.944 17 Si 0.916 3.084 18 H -0.284 1.284 19 H -0.287 1.287 20 H -0.215 1.215 21 C -0.158 4.158 22 C -0.164 4.164 23 C -0.068 4.068 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.177 0.823 28 H 0.133 0.867 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.266 0.734 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.269 3.527 8.242 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.126 4.126 4 C 0.063 3.937 5 F -0.119 7.119 6 C -0.135 4.135 7 C -0.108 4.108 8 C 0.345 3.655 9 O -0.425 6.425 10 O -0.255 6.255 11 C 0.036 3.964 12 C -0.046 4.046 13 C -0.514 4.514 14 H 0.053 0.947 15 C -0.173 4.173 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.211 1.211 19 H -0.213 1.213 20 H -0.137 1.137 21 C -0.195 4.195 22 C -0.201 4.201 23 C -0.086 4.086 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.194 0.806 28 H 0.151 0.849 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.297 3.254 8.058 20.256 hybrid contribution 0.793 -0.416 -0.879 1.255 sum -17.504 2.838 7.179 19.131 Atomic orbital electron populations 1.20931 0.86521 1.04889 1.04423 1.20062 0.98715 0.90258 0.96982 1.21644 0.90855 1.01229 0.98824 1.17642 0.91186 0.80353 1.04513 1.91517 1.81131 1.45183 1.94082 1.21467 1.01647 0.91160 0.99271 1.18941 0.94168 0.89207 1.08460 1.21654 0.81580 0.89982 0.72332 1.90749 1.70112 1.34124 1.47526 1.86645 1.19798 1.37571 1.81447 1.22891 0.92069 0.81320 1.00166 1.19252 0.89024 1.01406 0.94952 1.20355 1.33713 1.04352 0.93028 0.94739 1.25712 0.94732 1.00790 0.96064 1.70037 1.47188 1.38359 1.02765 0.86235 0.77506 0.82124 0.80128 1.21121 1.21298 1.13652 1.22864 1.03014 1.00545 0.93057 1.23143 1.01180 0.92106 1.03717 1.21427 0.90686 1.00517 0.96011 0.88820 0.88947 0.90136 0.80572 0.84869 0.93811 0.90353 0.92513 0.89761 0.87969 0.87894 0.89253 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 71.23 0.71 -0.30 16 2 C -0.06 -1.05 5.87 -19.91 -0.12 -1.16 16 3 C -0.11 -1.96 9.67 22.37 0.22 -1.74 16 4 C 0.08 2.14 7.29 22.34 0.16 2.30 16 5 F -0.14 -3.89 17.26 44.97 0.78 -3.11 16 6 C -0.12 -3.68 9.60 22.59 0.22 -3.46 16 7 C -0.11 -3.39 5.87 -20.10 -0.12 -3.51 16 8 C 0.50 19.55 7.88 70.33 0.55 20.10 16 9 O -0.53 -21.89 16.08 19.94 0.32 -21.57 16 10 O -0.34 -15.00 9.42 -56.19 -0.53 -15.53 16 11 C 0.11 4.79 5.01 71.98 0.36 5.15 16 12 C -0.05 -2.09 1.06 -52.92 -0.06 -2.14 16 13 C -0.48 -27.27 9.33 25.60 0.24 -27.03 16 14 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 15 C 0.02 1.46 5.47 84.65 0.46 1.92 16 16 N -0.94 -59.47 13.96 21.45 0.30 -59.17 16 17 Si 0.92 44.08 24.98 68.60 1.71 45.79 16 18 H -0.28 -13.87 7.03 99.48 0.70 -13.17 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.21 -9.04 5.72 99.48 0.57 -8.47 16 21 C -0.16 -6.04 9.96 30.62 0.30 -5.74 16 22 C -0.16 -6.30 8.01 30.62 0.25 -6.05 16 23 C -0.07 -1.64 9.24 22.54 0.21 -1.43 16 24 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 26 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 28 H 0.13 4.79 7.62 -2.91 -0.02 4.77 16 29 H 0.04 2.06 5.08 -2.39 -0.01 2.05 16 30 H 0.08 3.01 7.96 -2.39 -0.02 2.99 16 31 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.15 3.34 7.66 -2.91 -0.02 3.32 16 Total: -1.00 -70.79 315.43 6.92 -63.87 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.95 Total: 12.82 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.39 Total: -23.10 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.30 Total: -59.17 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.21 Total: -37.10 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.71 Total: 45.79 kcal Total: -70.79 6.92 -63.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174739973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.818 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds