Wall clock time and date at job start Mon Mar 30 2020 23:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.50701 * 109.46952 * 180.02562 * 14 12 11 16 16 C 1.38265 * 119.98806 * 269.73000 * 15 14 12 17 17 C 1.38227 * 120.05279 * 179.72667 * 16 15 14 18 18 C 1.38222 * 120.02185 * 0.54785 * 17 16 15 19 19 C 1.38436 * 119.97569 * 359.72320 * 18 17 16 20 20 F 1.35098 * 120.02554 * 180.02562 * 19 18 17 21 21 C 1.38179 * 119.98648 * 90.00228 * 15 14 12 22 22 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 23 23 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 24 24 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 26 26 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 27 27 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 28 28 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 29 29 H 1.08003 * 119.97346 * 359.97438 * 16 15 14 30 30 H 1.08002 * 119.98699 * 180.26863 * 17 16 15 31 31 H 1.08000 * 120.00561 * 179.70859 * 18 17 16 32 32 H 1.07992 * 120.01415 * 359.97438 * 21 15 14 33 33 H 1.09003 * 117.50064 * 359.97438 * 22 9 7 34 34 H 1.08997 * 117.50444 * 145.01778 * 22 9 7 35 35 H 1.08997 * 117.50286 * 214.97535 * 23 9 7 36 36 H 1.09000 * 117.49777 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9275 -4.9568 5.4305 16 6 1.6222 -4.1237 6.4910 17 6 1.0436 -4.6422 7.6342 18 6 0.7800 -5.9962 7.7229 19 6 1.0904 -6.8321 6.6640 20 9 0.8326 -8.1555 6.7494 21 6 1.6648 -6.3106 5.5169 22 6 1.7501 -3.4765 -1.2119 23 6 0.4459 -2.7041 -1.4260 24 1 -0.4850 0.8401 0.0004 25 1 0.0685 -2.3412 1.6433 26 1 0.1031 -3.9677 0.9209 27 1 3.1883 -5.1437 3.7191 28 1 3.1533 -3.5170 4.4408 29 1 1.8323 -3.0664 6.4244 30 1 0.8016 -3.9898 8.4602 31 1 0.3322 -6.4017 8.6182 32 1 1.9070 -6.9617 4.6901 33 1 2.6136 -3.1810 -1.8078 34 1 1.6739 -4.5408 -0.9896 35 1 -0.4877 -3.2606 -1.3445 36 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174743314.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:08 Heat of formation + Delta-G solvation = -88.205315 kcal Electronic energy + Delta-G solvation = -20658.409627 eV Core-core repulsion = 17215.787448 eV Total energy + Delta-G solvation = -3442.622178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.98022 -40.09703 -38.88313 -36.79231 -35.25171 -33.00763 -31.98886 -30.67486 -28.45954 -26.53567 -25.22240 -22.90028 -22.34607 -21.20767 -20.21312 -19.28345 -17.41173 -17.07803 -16.64640 -16.39355 -16.26718 -15.68055 -15.61194 -15.23544 -14.63042 -14.20712 -13.86247 -13.56773 -13.37143 -13.12911 -12.49383 -12.39645 -11.98109 -11.92370 -11.67081 -11.59831 -11.20186 -11.02093 -10.86910 -10.56996 -10.31812 -10.07550 -9.87734 -9.59226 -9.10153 -8.85659 -8.78323 -8.50091 -8.23479 -6.09695 -4.15181 1.00223 1.09153 2.71952 3.16636 3.26671 3.33858 3.36646 3.67374 4.09588 4.36605 4.46386 4.62476 4.86905 5.06345 5.13902 5.17127 5.20561 5.31377 5.44452 5.49710 5.73701 5.92729 5.96125 5.96538 6.15912 6.21966 6.30742 6.34480 6.50336 6.62665 6.70194 6.77082 7.00436 7.23348 7.33573 7.44481 7.83612 8.32408 8.41677 8.86681 9.50817 10.99732 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025088 B = 0.003852 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.817685 B = 7267.870220 C = 7913.761098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.116 3.884 11 O -0.337 6.337 12 C 0.454 3.546 13 O -0.515 6.515 14 C -0.079 4.079 15 C -0.039 4.039 16 C -0.112 4.112 17 C -0.090 4.090 18 C -0.155 4.155 19 C 0.096 3.904 20 F -0.142 7.142 21 C -0.138 4.138 22 C -0.205 4.205 23 C -0.146 4.146 24 H 0.261 0.739 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -9.612 12.231 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.043 3.957 11 O -0.252 6.252 12 C 0.296 3.704 13 O -0.405 6.405 14 C -0.116 4.116 15 C -0.039 4.039 16 C -0.131 4.131 17 C -0.108 4.108 18 C -0.174 4.174 19 C 0.077 3.923 20 F -0.121 7.121 21 C -0.157 4.157 22 C -0.242 4.242 23 C -0.183 4.183 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.619 -9.557 12.268 15.967 hybrid contribution 0.042 0.689 -0.057 0.692 sum 3.660 -8.869 12.211 15.529 Atomic orbital electron populations 1.69999 1.05928 1.26738 1.49108 1.25021 0.94849 0.99096 0.94488 0.86583 0.79962 0.83231 0.78202 1.20563 1.21248 1.19713 1.20391 0.93087 0.88324 1.50995 0.91830 1.18781 0.98874 0.94203 0.84467 1.22905 0.85811 0.96981 0.89969 1.86510 1.41651 1.70976 1.26086 1.23269 0.89586 0.75019 0.82498 1.90648 1.21393 1.51614 1.76840 1.20315 0.96326 1.03916 0.91087 1.19189 0.97680 0.92542 0.94496 1.21149 0.98758 1.00139 0.93014 1.20970 0.97477 0.94218 0.98128 1.21129 1.03439 0.94168 0.98676 1.17616 1.01115 0.77728 0.95829 1.91490 1.92114 1.31808 1.96651 1.20989 1.01423 0.95894 0.97395 1.23007 0.98407 0.95696 1.07120 1.22547 0.92497 1.01277 1.02022 0.92881 0.90547 0.94350 0.86763 0.86349 0.85068 0.84876 0.84883 0.84741 0.90044 0.91547 0.91645 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.61 12.93 55.43 0.72 -23.90 16 2 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.49 -13.15 8.77 -34.44 -0.30 -13.45 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.91 1.61 -155.67 -0.25 0.66 16 10 C 0.12 2.74 5.28 37.15 0.20 2.93 16 11 O -0.34 -7.14 10.16 -39.26 -0.40 -7.54 16 12 C 0.45 8.29 7.95 36.01 0.29 8.58 16 13 O -0.52 -10.87 15.78 -18.75 -0.30 -11.17 16 14 C -0.08 -1.00 5.94 -29.03 -0.17 -1.17 16 15 C -0.04 -0.49 4.37 -104.63 -0.46 -0.95 16 16 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 17 C -0.09 -0.92 10.04 -39.59 -0.40 -1.31 16 18 C -0.16 -1.66 10.03 -39.51 -0.40 -2.05 16 19 C 0.10 1.19 7.30 -39.42 -0.29 0.90 16 20 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 21 C -0.14 -1.73 9.68 -39.51 -0.38 -2.11 16 22 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 23 C -0.15 -3.36 9.43 -26.69 -0.25 -3.61 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.08 1.99 8.13 -51.93 -0.42 1.57 16 26 H 0.04 0.85 8.09 -51.92 -0.42 0.44 16 27 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 28 H 0.12 1.26 8.08 -51.93 -0.42 0.84 16 29 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -30.60 325.77 -7.82 -38.42 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.61 Total: 1.54 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.16 Total: -16.18 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.72 Total: -23.90 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.69 Total: -18.71 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.60 -7.82 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743314.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.788 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds