Wall clock time and date at job start Mon Mar 30 2020 23:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.50701 * 109.46952 * 180.02562 * 14 12 11 16 16 C 1.38265 * 119.98806 * 269.73000 * 15 14 12 17 17 C 1.38227 * 120.05279 * 179.72667 * 16 15 14 18 18 C 1.38222 * 120.02185 * 0.54785 * 17 16 15 19 19 C 1.38436 * 119.97569 * 359.72320 * 18 17 16 20 20 F 1.35098 * 120.02554 * 180.02562 * 19 18 17 21 21 C 1.38179 * 119.98648 * 90.00228 * 15 14 12 22 22 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 23 23 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 24 24 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 26 26 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 27 27 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 28 28 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 29 29 H 1.08003 * 119.97346 * 359.97438 * 16 15 14 30 30 H 1.08002 * 119.98699 * 180.26863 * 17 16 15 31 31 H 1.08000 * 120.00561 * 179.70859 * 18 17 16 32 32 H 1.07992 * 120.01415 * 359.97438 * 21 15 14 33 33 H 1.09003 * 117.50064 * 359.97438 * 22 9 7 34 34 H 1.08997 * 117.50444 * 145.01778 * 22 9 7 35 35 H 1.08997 * 117.50286 * 214.97535 * 23 9 7 36 36 H 1.09000 * 117.49777 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9275 -4.9568 5.4305 16 6 1.6222 -4.1237 6.4910 17 6 1.0436 -4.6422 7.6342 18 6 0.7800 -5.9962 7.7229 19 6 1.0904 -6.8321 6.6640 20 9 0.8326 -8.1555 6.7494 21 6 1.6648 -6.3106 5.5169 22 6 1.7501 -3.4765 -1.2119 23 6 0.4459 -2.7041 -1.4260 24 1 -0.4850 0.8401 0.0004 25 1 0.0685 -2.3412 1.6433 26 1 0.1031 -3.9677 0.9209 27 1 3.1883 -5.1437 3.7191 28 1 3.1533 -3.5170 4.4408 29 1 1.8323 -3.0664 6.4244 30 1 0.8016 -3.9898 8.4602 31 1 0.3322 -6.4017 8.6182 32 1 1.9070 -6.9617 4.6901 33 1 2.6136 -3.1810 -1.8078 34 1 1.6739 -4.5408 -0.9896 35 1 -0.4877 -3.2606 -1.3445 36 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174743314.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:07 Heat of formation + Delta-G solvation = -102.861125 kcal Electronic energy + Delta-G solvation = -20659.045150 eV Core-core repulsion = 17215.787448 eV Total energy + Delta-G solvation = -3443.257702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.91723 -41.50548 -39.93732 -38.53235 -36.91665 -34.03819 -33.97807 -31.54403 -29.67949 -28.17949 -27.16453 -23.78583 -23.44424 -22.94761 -21.53072 -21.18331 -18.65320 -18.42153 -18.17053 -17.64015 -17.13577 -17.06087 -16.91990 -16.59271 -16.49578 -15.62426 -15.06262 -14.90638 -14.50525 -14.29249 -13.97653 -13.85556 -13.51315 -13.12548 -13.00717 -12.91683 -12.78444 -12.60817 -12.39186 -12.09760 -12.04925 -11.68995 -11.65070 -11.36195 -10.78021 -10.49217 -10.10568 -9.96561 -9.67853 -8.13229 -6.24689 0.10103 0.21792 1.27630 1.43287 1.44788 1.54486 1.85854 2.43379 2.66429 3.16103 3.19305 3.44414 3.54224 3.79256 3.93624 4.08371 4.14636 4.21856 4.28869 4.39350 4.45244 4.48254 4.58898 4.66300 4.80045 4.92202 4.96481 5.06753 5.11969 5.18123 5.32046 5.46266 5.46608 5.57857 5.73021 5.75912 5.91812 6.36150 6.81006 6.85830 7.44397 8.95750 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025088 B = 0.003852 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.817685 B = 7267.870220 C = 7913.761098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.005 3.995 10 C 0.129 3.871 11 O -0.346 6.346 12 C 0.450 3.550 13 O -0.548 6.548 14 C -0.067 4.067 15 C -0.056 4.056 16 C -0.122 4.122 17 C -0.089 4.089 18 C -0.153 4.153 19 C 0.076 3.924 20 F -0.149 7.149 21 C -0.150 4.150 22 C -0.177 4.177 23 C -0.150 4.150 24 H 0.261 0.739 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -9.790 13.245 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.004 3.996 10 C 0.056 3.944 11 O -0.262 6.262 12 C 0.295 3.705 13 O -0.439 6.439 14 C -0.104 4.104 15 C -0.057 4.057 16 C -0.140 4.140 17 C -0.106 4.106 18 C -0.172 4.172 19 C 0.057 3.943 20 F -0.127 7.127 21 C -0.169 4.169 22 C -0.214 4.214 23 C -0.188 4.188 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.161 0.839 30 H 0.181 0.819 31 H 0.174 0.826 32 H 0.158 0.842 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.883 -9.750 13.285 17.188 hybrid contribution -0.362 0.692 -0.301 0.837 sum 4.521 -9.058 12.985 16.465 Atomic orbital electron populations 1.70113 1.07242 1.27319 1.50193 1.25736 0.95565 1.02204 0.94242 0.85628 0.78898 0.79287 0.78312 1.20043 1.21249 1.18919 1.20650 0.93016 0.89709 1.50770 0.92401 1.18891 1.00391 0.94831 0.85475 1.22470 0.86030 0.96106 0.89829 1.86515 1.40767 1.71615 1.27275 1.24403 0.90658 0.73509 0.81900 1.90630 1.23273 1.52844 1.77143 1.20448 0.94665 1.05594 0.89714 1.19265 0.98836 0.92744 0.94828 1.21462 0.98542 1.00758 0.93285 1.21343 0.96347 0.94424 0.98518 1.21469 1.02494 0.94289 0.98912 1.17874 1.02081 0.77779 0.96611 1.91469 1.92272 1.32275 1.96722 1.21150 1.01661 0.96220 0.97846 1.23017 0.97436 0.96382 1.04520 1.22483 0.93876 1.01420 1.00972 0.93039 0.94227 0.93677 0.83979 0.84004 0.83931 0.81878 0.82612 0.84216 0.89464 0.89100 0.90616 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.72 12.93 21.45 0.28 -51.44 16 2 C 0.02 1.23 5.39 84.66 0.46 1.69 16 3 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.50 -27.08 8.77 25.60 0.22 -26.85 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.00 0.22 1.61 -52.93 -0.08 0.14 16 10 C 0.13 6.15 5.28 71.98 0.38 6.53 16 11 O -0.35 -14.55 10.16 -51.44 -0.52 -15.07 16 12 C 0.45 16.19 7.95 71.24 0.57 16.76 16 13 O -0.55 -23.23 15.78 21.97 0.35 -22.88 16 14 C -0.07 -1.57 5.94 29.10 0.17 -1.40 16 15 C -0.06 -1.34 4.37 -19.87 -0.09 -1.43 16 16 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 17 C -0.09 -1.59 10.04 22.26 0.22 -1.36 16 18 C -0.15 -2.95 10.03 22.31 0.22 -2.73 16 19 C 0.08 1.78 7.30 22.38 0.16 1.95 16 20 F -0.15 -3.68 17.27 44.97 0.78 -2.90 16 21 C -0.15 -3.60 9.68 22.31 0.22 -3.39 16 22 C -0.18 -7.31 9.96 30.62 0.30 -7.01 16 23 C -0.15 -6.88 9.43 30.62 0.29 -6.59 16 24 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 25 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 26 H 0.04 2.03 8.09 -2.38 -0.02 2.01 16 27 H 0.14 2.52 8.08 -2.39 -0.02 2.50 16 28 H 0.14 2.66 8.08 -2.39 -0.02 2.64 16 29 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -66.27 325.77 7.25 -59.02 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.08 Total: 14.87 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 3.27 Total: -26.09 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.28 Total: -51.44 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.18 Total: -37.95 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.78 Total: -2.90 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.27 7.25 -59.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743314.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.842 kcal (2) G-P(sol) polarization free energy of solvation -66.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds