Wall clock time and date at job start Mon Mar 30 2020 23:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00473 * 2 1 4 4 H 1.48499 * 109.47316 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46748 * 300.00638 * 3 2 1 6 6 H 1.48505 * 109.46654 * 60.00273 * 3 2 1 7 7 C 1.37878 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99961 * 173.70266 * 7 2 1 9 9 C 1.50706 * 119.99824 * 353.69621 * 7 2 1 10 10 C 1.52991 * 115.54726 * 86.11724 * 9 7 2 11 11 O 1.45201 * 109.47372 * 65.10962 * 10 9 7 12 12 C 1.34233 * 116.99927 * 179.97438 * 11 10 9 13 13 O 1.20816 * 120.00432 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99647 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.46948 * 179.97438 * 14 12 11 16 16 C 1.38245 * 119.97138 * 269.73095 * 15 14 12 17 17 C 1.38206 * 120.02213 * 179.72603 * 16 15 14 18 18 C 1.38460 * 119.97282 * 0.57112 * 17 16 15 19 19 F 1.35101 * 120.02467 * 179.68502 * 18 17 16 20 20 C 1.38457 * 119.94752 * 359.69499 * 18 17 16 21 21 C 1.38195 * 119.97717 * 0.02562 * 20 18 17 22 22 C 1.52997 * 117.49565 * 231.78596 * 9 7 2 23 23 C 1.53000 * 117.49822 * 300.44345 * 9 7 2 24 24 H 0.97006 * 119.99809 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47415 * 305.10310 * 10 9 7 26 26 H 1.09003 * 109.47029 * 185.10499 * 10 9 7 27 27 H 1.08999 * 109.47395 * 300.00052 * 14 12 11 28 28 H 1.09001 * 109.46775 * 59.99657 * 14 12 11 29 29 H 1.07996 * 119.98775 * 359.97438 * 16 15 14 30 30 H 1.07999 * 120.01409 * 180.25014 * 17 16 15 31 31 H 1.08002 * 120.01197 * 179.97438 * 20 18 17 32 32 H 1.08004 * 119.99043 * 179.97438 * 21 20 18 33 33 H 1.08998 * 117.50004 * 215.00236 * 22 9 7 34 34 H 1.08999 * 117.50319 * 0.02562 * 22 9 7 35 35 H 1.08999 * 117.49681 * 359.97438 * 23 9 7 36 36 H 1.09001 * 117.49659 * 144.97728 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1031 9 6 1.2577 -2.4953 0.1422 10 6 0.7191 -3.0931 -1.1590 11 8 1.8298 -3.4644 -2.0173 12 6 1.5259 -4.0083 -3.2063 13 8 0.3701 -4.1691 -3.5194 14 6 2.6264 -4.4182 -4.1508 15 6 2.0228 -4.9970 -5.4045 16 6 1.7696 -6.3536 -5.4864 17 6 1.2108 -6.8846 -6.6335 18 6 0.9155 -6.0592 -7.7052 19 9 0.3752 -6.5782 -8.8294 20 6 1.1747 -4.7015 -7.6240 21 6 1.7281 -4.1719 -6.4738 22 6 1.7339 -3.4682 1.2227 23 6 0.4252 -2.6966 1.4100 24 1 -0.4850 0.8401 0.0004 25 1 0.0975 -2.3561 -1.6675 26 1 0.1230 -3.9773 -0.9333 27 1 3.2294 -3.5468 -4.4062 28 1 3.2560 -5.1678 -3.6715 29 1 2.0049 -6.9979 -4.6523 30 1 1.0094 -7.9438 -6.6959 31 1 0.9451 -4.0568 -8.4595 32 1 1.9307 -3.1129 -6.4103 33 1 1.6634 -4.5342 1.0066 34 1 2.5870 -3.1670 1.8306 35 1 0.4180 -1.8882 2.1410 36 1 -0.5065 -3.2547 1.3169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174750888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:47 Heat of formation + Delta-G solvation = -102.938058 kcal Electronic energy + Delta-G solvation = -20587.985070 eV Core-core repulsion = 17144.724033 eV Total energy + Delta-G solvation = -3443.261038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.91995 -41.47914 -39.93878 -38.51460 -36.88991 -34.01508 -33.72422 -32.11291 -29.42252 -28.01122 -27.09781 -24.05292 -23.33443 -22.91424 -21.46644 -21.17319 -18.68340 -18.60078 -18.27806 -17.66898 -17.12568 -17.04701 -16.60359 -16.53623 -16.26142 -15.59417 -15.01227 -14.95425 -14.57891 -14.43829 -13.98039 -13.84352 -13.52837 -13.14297 -12.92854 -12.90947 -12.81082 -12.71083 -12.35158 -12.07834 -11.94834 -11.66684 -11.63243 -11.34534 -10.75999 -10.48781 -10.08050 -10.06827 -9.60860 -8.13209 -6.24409 0.05315 0.27610 1.31144 1.41521 1.44654 1.55664 1.87605 2.43248 2.66325 3.16266 3.26245 3.46341 3.57189 3.73685 3.95346 3.99297 4.15818 4.20369 4.30345 4.40709 4.49610 4.59269 4.62522 4.67637 4.84281 4.95731 4.97991 5.01599 5.13211 5.19767 5.22306 5.48216 5.49130 5.59745 5.75066 5.76947 5.90735 6.36863 6.81714 6.89171 7.44735 8.95796 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025531 B = 0.003697 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.450551 B = 7571.230837 C = 8139.506284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.004 3.996 10 C 0.130 3.870 11 O -0.347 6.347 12 C 0.450 3.550 13 O -0.548 6.548 14 C -0.065 4.065 15 C -0.093 4.093 16 C -0.079 4.079 17 C -0.156 4.156 18 C 0.079 3.921 19 F -0.148 7.148 20 C -0.159 4.159 21 C -0.085 4.085 22 C -0.176 4.176 23 C -0.150 4.150 24 H 0.260 0.740 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -11.464 -11.328 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.004 3.996 10 C 0.056 3.944 11 O -0.263 6.263 12 C 0.295 3.705 13 O -0.440 6.440 14 C -0.102 4.102 15 C -0.093 4.093 16 C -0.097 4.097 17 C -0.175 4.175 18 C 0.060 3.940 19 F -0.127 7.127 20 C -0.177 4.177 21 C -0.103 4.103 22 C -0.213 4.213 23 C -0.187 4.187 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.164 0.836 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.639 -11.391 -11.416 17.084 hybrid contribution -0.507 1.079 -0.158 1.203 sum 5.132 -10.312 -11.574 16.328 Atomic orbital electron populations 1.70123 1.07218 1.27207 1.50327 1.25732 0.95564 1.02193 0.94311 0.85590 0.79435 0.79711 0.77462 1.18703 1.21010 1.20618 1.20691 0.93047 0.89740 1.50557 0.92404 1.18889 1.00479 0.94819 0.85451 1.22455 0.85668 0.96065 0.90215 1.86520 1.40520 1.71287 1.27926 1.24488 0.90921 0.73530 0.81610 1.90629 1.23958 1.53046 1.76318 1.20425 0.94346 1.05435 0.89959 1.19570 1.00862 0.94304 0.94607 1.21182 0.96191 0.94627 0.97674 1.21351 1.01879 1.01449 0.92783 1.17983 0.99415 0.92872 0.83737 1.91472 1.83816 1.87372 1.50000 1.21309 1.02242 0.93680 1.00502 1.21158 0.96390 1.00723 0.91985 1.23022 0.97471 0.96469 1.04310 1.22471 0.93719 1.01366 1.01156 0.93082 0.94465 0.93518 0.84567 0.83555 0.82871 0.82753 0.83244 0.83847 0.88957 0.89526 0.91300 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.66 12.88 21.45 0.28 -51.39 16 2 C 0.02 1.19 5.38 84.65 0.46 1.65 16 3 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.50 -26.92 8.78 25.60 0.22 -26.69 16 8 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 9 C 0.00 0.20 1.62 -52.93 -0.09 0.11 16 10 C 0.13 6.08 5.29 71.98 0.38 6.46 16 11 O -0.35 -14.28 10.16 -51.45 -0.52 -14.80 16 12 C 0.45 15.67 7.95 71.24 0.57 16.23 16 13 O -0.55 -22.70 15.78 21.99 0.35 -22.35 16 14 C -0.06 -1.43 5.94 29.10 0.17 -1.25 16 15 C -0.09 -2.09 4.37 -19.86 -0.09 -2.17 16 16 C -0.08 -1.59 9.70 22.26 0.22 -1.37 16 17 C -0.16 -3.14 10.03 22.32 0.22 -2.91 16 18 C 0.08 1.78 7.30 22.38 0.16 1.95 16 19 F -0.15 -3.47 17.27 44.97 0.78 -2.69 16 20 C -0.16 -3.42 10.03 22.31 0.22 -3.20 16 21 C -0.08 -1.88 9.70 22.26 0.22 -1.66 16 22 C -0.18 -7.18 9.96 30.62 0.30 -6.87 16 23 C -0.15 -6.81 9.37 30.62 0.29 -6.52 16 24 H 0.26 14.11 8.31 -92.70 -0.77 13.33 16 25 H 0.04 1.99 8.13 -2.39 -0.02 1.97 16 26 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 27 H 0.14 2.48 8.09 -2.39 -0.02 2.46 16 28 H 0.15 2.28 8.08 -2.39 -0.02 2.26 16 29 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 33 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 35 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -65.86 325.68 7.24 -58.62 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.08 Total: 14.35 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 3.26 Total: -26.27 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.28 Total: -51.39 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.18 Total: -37.16 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -65.86 7.24 -58.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174750888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.322 kcal (2) G-P(sol) polarization free energy of solvation -65.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds