Wall clock time and date at job start Mon Mar 30 2020 23:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48494 * 109.47210 * 240.00115 * 3 2 1 5 5 H 1.48494 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46944 * 119.99996 * 3 2 1 7 7 C 1.37881 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 173.70372 * 7 2 1 9 9 C 1.50696 * 119.99982 * 353.70552 * 7 2 1 10 10 C 1.53007 * 115.54854 * 86.11211 * 9 7 2 11 11 O 1.45200 * 109.47112 * 65.10962 * 10 9 7 12 12 C 1.34225 * 116.99678 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00203 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99740 * 179.97438 * 12 11 10 15 15 C 1.50706 * 109.47135 * 180.02562 * 14 12 11 16 16 C 1.38222 * 120.01168 * 100.00209 * 15 14 12 17 17 C 1.38225 * 120.02233 * 180.27634 * 16 15 14 18 18 C 1.38273 * 120.04887 * 359.49015 * 17 16 15 19 19 C 1.38170 * 120.02730 * 0.51060 * 18 17 16 20 20 C 1.38439 * 120.01021 * 280.02465 * 15 14 12 21 21 F 1.35103 * 120.02922 * 359.95155 * 20 15 14 22 22 C 1.52997 * 117.50234 * 231.78117 * 9 7 2 23 23 C 1.53000 * 117.50112 * 300.44533 * 9 7 2 24 24 H 0.97001 * 119.99918 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47269 * 305.10761 * 10 9 7 26 26 H 1.09000 * 109.46855 * 185.10863 * 10 9 7 27 27 H 1.09005 * 109.47268 * 60.00126 * 14 12 11 28 28 H 1.08992 * 109.47573 * 300.00058 * 14 12 11 29 29 H 1.07994 * 119.98770 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.97283 * 179.72517 * 17 16 15 31 31 H 1.08005 * 119.98116 * 180.25533 * 18 17 16 32 32 H 1.07997 * 120.01392 * 179.76824 * 19 18 17 33 33 H 1.08995 * 117.50314 * 214.99929 * 22 9 7 34 34 H 1.09001 * 117.49578 * 0.02910 * 22 9 7 35 35 H 1.09004 * 117.49290 * 359.97047 * 23 9 7 36 36 H 1.08999 * 117.50157 * 144.97073 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1031 9 6 1.2578 -2.4953 0.1420 10 6 0.7193 -3.0930 -1.1595 11 8 1.8301 -3.4642 -2.0177 12 6 1.5263 -4.0079 -3.2067 13 8 0.3705 -4.1688 -3.5198 14 6 2.6268 -4.4176 -4.1511 15 6 2.0233 -4.9952 -5.4055 16 6 1.9195 -4.2182 -6.5440 17 6 1.3608 -4.7459 -7.6928 18 6 0.9147 -6.0546 -7.7078 19 6 1.0174 -6.8331 -6.5709 20 6 1.5722 -6.3039 -5.4177 21 9 1.6736 -7.0644 -4.3057 22 6 1.7339 -3.4684 1.2224 23 6 0.4251 -2.6968 1.4096 24 1 -0.4850 0.8401 -0.0004 25 1 0.0977 -2.3560 -1.6680 26 1 0.1233 -3.9773 -0.9338 27 1 3.2565 -5.1673 -3.6719 28 1 3.2298 -3.5462 -4.4064 29 1 2.2707 -3.1970 -6.5344 30 1 1.2761 -4.1368 -8.5805 31 1 0.4821 -6.4671 -8.6073 32 1 0.6655 -7.8541 -6.5817 33 1 1.6634 -4.5343 1.0061 34 1 2.5869 -3.1672 1.8304 35 1 0.4178 -1.8884 2.1407 36 1 -0.5065 -3.2549 1.3164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174752806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:50 Heat of formation + Delta-G solvation = -102.183168 kcal Electronic energy + Delta-G solvation = -20983.239211 eV Core-core repulsion = 17540.010907 eV Total energy + Delta-G solvation = -3443.228303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.95767 -41.50062 -39.87967 -38.57596 -36.96998 -34.12338 -34.02213 -31.48906 -29.66407 -28.17624 -27.17505 -23.79791 -23.43749 -22.96240 -21.55631 -21.20679 -18.71171 -18.62247 -18.29241 -17.74071 -17.20957 -17.07237 -16.63709 -16.57606 -16.33426 -15.60080 -15.13054 -14.97645 -14.42666 -14.27527 -14.07634 -13.84907 -13.54178 -13.23256 -13.14991 -12.91820 -12.79346 -12.50264 -12.40435 -12.11688 -12.00089 -11.74100 -11.69647 -11.41151 -10.80151 -10.50138 -10.12564 -9.94956 -9.64328 -8.14155 -6.26160 0.11625 0.25273 1.21441 1.43264 1.44541 1.52317 1.82879 2.42520 2.68035 3.14567 3.29918 3.40643 3.43544 3.74526 3.90764 4.04485 4.11399 4.24825 4.35793 4.37565 4.44414 4.48129 4.51583 4.63569 4.79370 4.93235 4.94557 5.09091 5.15583 5.18919 5.35966 5.42829 5.45430 5.55612 5.67859 5.73891 5.94716 6.34462 6.78796 6.79980 7.42836 8.94718 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023761 B = 0.004291 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.098384 B = 6524.398289 C = 7223.198428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.004 3.996 10 C 0.129 3.871 11 O -0.346 6.346 12 C 0.451 3.549 13 O -0.547 6.547 14 C -0.068 4.068 15 C -0.127 4.127 16 C -0.088 4.088 17 C -0.128 4.128 18 C -0.086 4.086 19 C -0.163 4.163 20 C 0.083 3.917 21 F -0.153 7.153 22 C -0.178 4.178 23 C -0.146 4.146 24 H 0.261 0.739 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.129 0.871 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.965 -10.556 -14.984 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.003 3.997 10 C 0.056 3.944 11 O -0.262 6.262 12 C 0.295 3.705 13 O -0.438 6.438 14 C -0.105 4.105 15 C -0.128 4.128 16 C -0.106 4.106 17 C -0.146 4.146 18 C -0.103 4.103 19 C -0.181 4.181 20 C 0.064 3.936 21 F -0.132 7.132 22 C -0.215 4.215 23 C -0.184 4.184 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.147 0.853 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.168 0.832 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.458 -10.491 -14.975 18.820 hybrid contribution -0.205 0.791 0.661 1.052 sum 4.252 -9.700 -14.314 17.806 Atomic orbital electron populations 1.70110 1.07261 1.27449 1.50003 1.25751 0.95595 1.02253 0.94130 0.85663 0.78440 0.78840 0.79049 1.19529 1.21080 1.19340 1.20607 0.93008 0.89689 1.51081 0.92463 1.18894 1.00581 0.94872 0.85309 1.22504 0.85618 0.95981 0.90343 1.86514 1.40679 1.71241 1.27747 1.24360 0.90834 0.73543 0.81715 1.90605 1.23769 1.52984 1.76412 1.20329 0.94713 1.05132 0.90337 1.19541 1.03846 0.93164 0.96266 1.21304 0.97583 1.00041 0.91665 1.21611 0.97980 0.96144 0.98849 1.21471 0.97094 0.93702 0.98065 1.21431 1.01943 1.02658 0.92091 1.17970 1.02102 0.89748 0.83766 1.91448 1.94218 1.75577 1.51959 1.23020 0.97695 0.96332 1.04480 1.22470 0.93567 1.01296 1.01026 0.92969 0.94159 0.93875 0.85327 0.83695 0.83309 0.82084 0.81576 0.83162 0.89345 0.89384 0.91008 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.41 12.88 21.45 0.28 -52.14 16 2 C 0.02 1.26 5.38 84.66 0.46 1.72 16 3 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.51 -27.86 8.78 25.60 0.22 -27.64 16 8 H 0.06 3.13 7.82 -2.91 -0.02 3.10 16 9 C 0.00 0.20 1.62 -52.93 -0.09 0.11 16 10 C 0.13 6.42 5.29 71.98 0.38 6.80 16 11 O -0.35 -15.60 10.16 -51.37 -0.52 -16.12 16 12 C 0.45 17.85 7.94 71.24 0.57 18.41 16 13 O -0.55 -24.85 15.70 21.97 0.34 -24.51 16 14 C -0.07 -1.89 5.67 29.10 0.16 -1.72 16 15 C -0.13 -3.37 4.43 -19.82 -0.09 -3.46 16 16 C -0.09 -1.87 9.67 22.26 0.22 -1.65 16 17 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 18 C -0.09 -1.37 10.04 22.26 0.22 -1.14 16 19 C -0.16 -3.41 10.03 22.31 0.22 -3.18 16 20 C 0.08 2.28 7.13 22.38 0.16 2.44 16 21 F -0.15 -4.75 16.67 44.97 0.75 -4.00 16 22 C -0.18 -7.70 9.96 30.62 0.30 -7.39 16 23 C -0.15 -6.89 9.37 30.62 0.29 -6.61 16 24 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.04 2.24 8.13 -2.39 -0.02 2.22 16 26 H 0.04 2.04 8.08 -2.39 -0.02 2.03 16 27 H 0.13 3.13 7.95 -2.38 -0.02 3.11 16 28 H 0.15 3.17 8.00 -2.39 -0.02 3.15 16 29 H 0.15 2.58 8.04 -2.91 -0.02 2.55 16 30 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 31 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.09 3.66 8.14 -2.39 -0.02 3.65 16 35 H 0.07 3.58 8.14 -2.38 -0.02 3.56 16 36 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -69.00 324.69 7.21 -61.79 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 1.08 Total: 15.10 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 3.26 Total: -25.20 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.28 Total: -52.14 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.18 Total: -40.63 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.75 Total: -4.00 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -69.00 7.21 -61.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174752806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.391 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds