Wall clock time and date at job start Tue Mar 31 2020 00:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38238 * 119.96948 * 2 1 4 4 C 1.38490 * 120.12470 * 180.18651 * 3 2 1 5 5 C 1.39308 * 119.95077 * 359.57729 * 4 3 2 6 6 C 1.38468 * 119.89888 * 0.21079 * 5 4 3 7 7 C 1.38821 * 119.97042 * 179.76543 * 2 1 3 8 8 N 1.39928 * 120.00328 * 0.04456 * 7 2 1 9 9 C 1.46497 * 119.99736 * 179.97438 * 8 7 2 10 10 C 1.50702 * 109.47133 * 180.02562 * 9 8 7 11 11 O 1.21294 * 119.99930 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00575 * 180.02562 * 10 9 8 13 13 C 1.37092 * 120.00615 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99641 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00475 * 179.97438 * 13 12 10 16 16 N 1.31406 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47051 * 60.00200 * 17 15 13 19 19 H 1.48502 * 109.46655 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47103 * 299.99776 * 17 15 13 21 21 O 1.36507 * 108.64369 * 180.25046 * 5 4 3 22 22 C 1.43980 * 105.50441 * 342.68957 * 21 5 4 23 23 O 1.36635 * 131.45000 * 179.87988 * 4 3 2 24 24 H 1.08997 * 109.46913 * 270.23545 * 1 2 3 25 25 H 1.09002 * 109.47397 * 30.23147 * 1 2 3 26 26 H 1.08994 * 109.47246 * 150.23549 * 1 2 3 27 27 H 1.08001 * 119.94216 * 0.09751 * 3 2 1 28 28 H 1.08004 * 120.01051 * 180.02562 * 6 5 4 29 29 H 0.96996 * 119.99683 * 359.97438 * 8 7 2 30 30 H 1.09002 * 109.47584 * 299.99817 * 9 8 7 31 31 H 1.08993 * 109.47487 * 60.00047 * 9 8 7 32 32 H 0.97006 * 119.99606 * 359.97438 * 12 10 9 33 33 H 0.97001 * 120.00031 * 180.02562 * 16 15 13 34 34 H 1.08997 * 110.57067 * 268.59912 * 22 21 5 35 35 H 1.09002 * 110.57315 * 145.72635 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1975 0.0000 4 6 3.5824 1.2013 -0.0039 5 6 4.2812 -0.0038 0.0011 6 6 3.5890 -1.2031 0.0055 7 6 2.2004 -1.2026 0.0049 8 7 1.5002 -2.4141 0.0089 9 6 2.2322 -3.6830 0.0136 10 6 1.2524 -4.8281 0.0166 11 8 0.0600 -4.6060 0.0156 12 7 1.7010 -6.0990 0.0216 13 6 0.8097 -7.1406 0.0239 14 1 -0.2521 -6.9428 0.0221 15 6 1.2723 -8.4509 0.0284 16 7 2.5641 -8.6915 0.0301 17 14 0.0576 -9.8701 0.0323 18 1 -0.7951 -9.7950 -1.1810 19 1 0.7996 -11.1565 0.0363 20 1 -0.7968 -9.7871 1.2439 21 8 5.6190 0.2675 0.0014 22 6 5.7334 1.6406 -0.4162 23 8 4.4841 2.2279 -0.0069 24 1 -0.3633 0.0042 1.0276 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3633 -0.8920 -0.5101 27 1 1.6560 2.1320 0.0016 28 1 4.1289 -2.1384 0.0098 29 1 0.5303 -2.4136 0.0087 30 1 2.8591 -3.7442 -0.8760 31 1 2.8585 -3.7380 0.9039 32 1 2.6546 -6.2766 0.0228 33 1 2.8870 -9.6062 0.0329 34 1 5.8499 1.7035 -1.4981 35 1 6.5684 2.1263 0.0888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180418294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:55 Heat of formation + Delta-G solvation = -92.425940 kcal Electronic energy + Delta-G solvation = -20697.240303 eV Core-core repulsion = 17274.355066 eV Total energy + Delta-G solvation = -3422.885237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.97974 -40.56240 -39.52522 -37.15106 -36.27656 -35.48817 -33.38705 -33.06508 -30.66512 -28.46884 -27.88480 -26.48719 -25.71986 -23.33223 -22.76809 -21.23434 -20.07573 -19.45136 -18.40724 -18.24009 -17.59608 -17.10117 -16.79175 -16.38108 -16.21806 -15.83530 -15.62217 -15.24728 -14.84250 -14.78519 -14.48502 -13.97643 -13.92869 -13.82366 -13.54597 -13.37923 -13.19990 -12.92669 -12.78602 -12.47262 -12.14350 -12.00771 -11.94447 -11.56063 -10.53695 -10.41121 -10.09326 -9.52198 -8.51236 -8.13916 -6.01055 0.22391 0.42077 1.37946 1.42417 1.52876 1.83229 1.92570 2.20532 2.39450 2.67213 2.67672 3.16255 3.17741 3.62410 3.89622 4.00527 4.06791 4.14395 4.18956 4.31328 4.41175 4.46990 4.53773 4.67595 4.85750 4.87529 5.08043 5.11735 5.19373 5.37542 5.41998 5.49730 5.87731 6.08548 6.32224 6.50366 6.72940 7.04443 7.45280 7.96829 8.65350 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032690 B = 0.003362 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.326986 B = 8327.114106 C = 9151.014853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.157 4.157 3 C -0.047 4.047 4 C -0.047 4.047 5 C 0.063 3.937 6 C -0.192 4.192 7 C 0.227 3.773 8 N -0.724 5.724 9 C 0.124 3.876 10 C 0.431 3.569 11 O -0.627 6.627 12 N -0.560 5.560 13 C -0.339 4.339 14 H 0.084 0.916 15 C -0.008 4.008 16 N -0.915 5.915 17 Si 0.994 3.006 18 H -0.271 1.271 19 H -0.271 1.271 20 H -0.271 1.271 21 O -0.327 6.327 22 C 0.206 3.794 23 O -0.325 6.325 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.410 0.590 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.099 0.901 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 18.132 -1.204 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.162 4.162 3 C -0.066 4.066 4 C -0.092 4.092 5 C 0.018 3.982 6 C -0.216 4.216 7 C 0.122 3.878 8 N -0.358 5.358 9 C -0.005 4.005 10 C 0.218 3.782 11 O -0.516 6.516 12 N -0.195 5.195 13 C -0.468 4.468 14 H 0.102 0.898 15 C -0.209 4.209 16 N -0.555 5.555 17 Si 0.818 3.182 18 H -0.196 1.196 19 H -0.196 1.196 20 H -0.196 1.196 21 O -0.244 6.244 22 C 0.095 3.905 23 O -0.242 6.242 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.175 0.825 28 H 0.156 0.844 29 H 0.250 0.750 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.625 17.985 -1.102 18.603 hybrid contribution 0.084 -1.017 -0.042 1.022 sum 4.709 16.967 -1.144 17.646 Atomic orbital electron populations 1.20610 0.88881 1.03356 1.02959 1.19289 0.97214 0.89892 1.09846 1.19830 0.88551 0.98819 0.99436 1.19659 0.92474 0.85060 1.12016 1.19500 0.82621 0.94646 1.01417 1.19458 0.91739 0.96274 1.14113 1.17297 0.89983 0.86028 0.94479 1.44520 1.09120 1.01083 1.81046 1.20869 0.93430 0.82272 1.03884 1.20570 0.89608 0.84693 0.83313 1.90475 1.18454 1.84692 1.57931 1.41827 1.09807 1.04294 1.63607 1.19677 0.91065 0.85575 1.50531 0.89845 1.26075 0.98425 1.00629 0.95799 1.69658 1.13694 1.22872 1.49296 0.84967 0.77636 0.76585 0.79054 1.19573 1.19551 1.19589 1.87300 1.20823 1.31458 1.84789 1.26026 0.87798 0.75171 1.01499 1.87290 1.19248 1.31535 1.86129 0.90666 0.89088 0.92538 0.82530 0.84418 0.74963 0.88604 0.88678 0.76621 0.91068 0.88346 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 9.57 71.23 0.68 -1.41 16 2 C -0.16 -3.92 5.90 -19.73 -0.12 -4.04 16 3 C -0.05 -1.10 9.70 22.33 0.22 -0.88 16 4 C -0.05 -1.22 7.15 22.59 0.16 -1.06 16 5 C 0.06 1.77 7.14 22.58 0.16 1.93 16 6 C -0.19 -5.48 9.32 22.47 0.21 -5.27 16 7 C 0.23 6.53 6.63 38.14 0.25 6.78 16 8 N -0.72 -23.11 5.61 -343.05 -1.92 -25.04 16 9 C 0.12 4.15 5.39 85.63 0.46 4.61 16 10 C 0.43 19.50 7.85 87.66 0.69 20.19 16 11 O -0.63 -32.60 15.24 -3.07 -0.05 -32.64 16 12 N -0.56 -27.54 5.29 -306.98 -1.62 -29.16 16 13 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 14 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 15 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 16 N -0.92 -47.96 13.05 21.66 0.28 -47.68 16 17 Si 0.99 41.53 29.55 68.60 2.03 43.55 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 O -0.33 -8.37 11.40 -76.13 -0.87 -9.24 16 22 C 0.21 3.64 8.89 113.37 1.01 4.64 16 23 O -0.32 -7.70 11.41 -77.64 -0.89 -8.59 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.42 8.09 -2.39 -0.02 1.41 16 26 H 0.06 1.31 6.53 -2.39 -0.02 1.29 16 27 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 28 H 0.14 3.71 6.73 -2.91 -0.02 3.69 16 29 H 0.41 13.92 5.42 -92.71 -0.50 13.42 16 30 H 0.10 2.87 7.95 -2.39 -0.02 2.85 16 31 H 0.10 2.87 7.95 -2.39 -0.02 2.86 16 32 H 0.40 18.62 7.90 -92.70 -0.73 17.89 16 33 H 0.28 13.77 8.31 -92.71 -0.77 12.99 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.55 304.12 1.89 -63.66 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.08 Total: 37.37 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.01 Total: 7.77 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -3.26 Total: -101.88 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -1.80 Total: -50.47 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -65.55 1.89 -63.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180418294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.766 kcal (2) G-P(sol) polarization free energy of solvation -65.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds