Wall clock time and date at job start Mon Mar 30 2020 23:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48503 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46871 * 299.99514 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99626 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 197.85789 * 7 2 1 9 9 C 1.41435 * 120.00029 * 17.86125 * 7 2 1 10 10 C 1.40782 * 120.17859 * 204.36202 * 9 7 2 11 11 C 1.37709 * 120.04062 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41454 * 0.05068 * 11 10 9 13 13 C 1.39882 * 120.35542 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02157 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99420 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00215 * 359.97438 * 14 13 12 17 17 C 1.46501 * 119.99764 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46733 * 179.97438 * 17 16 14 19 19 O 1.45200 * 109.47034 * 65.00497 * 18 17 16 20 20 C 1.34639 * 116.99821 * 179.97438 * 19 18 17 21 21 N 1.34776 * 119.99603 * 179.97438 * 20 19 18 22 22 O 1.21501 * 120.00277 * 359.97438 * 20 19 18 23 23 C 1.39030 * 119.95217 * 359.97438 * 13 12 11 24 24 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.98168 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.79563 * 180.02562 * 11 10 9 27 27 H 1.08003 * 119.82123 * 179.97438 * 12 11 10 28 28 H 0.96996 * 119.99968 * 359.97438 * 16 14 13 29 29 H 1.08992 * 109.47231 * 300.00018 * 17 16 14 30 30 H 1.08999 * 109.47030 * 59.99886 * 17 16 14 31 31 H 1.09002 * 109.46890 * 185.00170 * 18 17 16 32 32 H 1.09001 * 109.47601 * 305.00235 * 18 17 16 33 33 H 0.97000 * 120.00395 * 359.97438 * 21 20 19 34 34 H 0.97001 * 119.99732 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.20691 * 179.73118 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2874 9 6 1.3520 -2.4074 -0.3746 10 6 1.8274 -3.6500 0.0858 11 6 1.1862 -4.8122 -0.2808 12 6 0.0738 -4.7693 -1.1026 13 6 -0.4127 -3.5440 -1.5703 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0251 -2.4417 -2.8536 16 7 -2.2181 -4.6534 -2.7977 17 6 -3.3964 -4.6164 -3.6675 18 6 -3.8972 -6.0418 -3.9087 19 8 -4.3623 -6.6099 -2.6560 20 6 -4.8392 -7.8683 -2.6952 21 7 -5.2863 -8.4550 -1.5672 22 8 -4.8664 -8.4752 -3.7475 23 6 0.2225 -2.3613 -1.2087 24 1 -0.4850 0.8399 -0.0004 25 1 2.6951 -3.6917 0.7276 26 1 1.5541 -5.7633 0.0751 27 1 -0.4214 -5.6867 -1.3845 28 1 -1.8806 -5.5033 -2.4742 29 1 -4.1820 -4.0307 -3.1903 30 1 -3.1303 -4.1590 -4.6204 31 1 -4.7180 -6.0221 -4.6256 32 1 -3.0841 -6.6507 -4.3040 33 1 -5.2642 -7.9707 -0.7270 34 1 -5.6302 -9.3615 -1.5955 35 1 -0.1471 -1.4134 -1.5709 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180771319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:06 Heat of formation + Delta-G solvation = -108.179961 kcal Electronic energy + Delta-G solvation = -20567.258508 eV Core-core repulsion = 17143.690126 eV Total energy + Delta-G solvation = -3423.568382 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57705 -39.19343 -37.19442 -36.72848 -34.50975 -33.99897 -33.69693 -30.72372 -29.47864 -29.04926 -25.34481 -23.83985 -22.36505 -21.56684 -20.90135 -19.62936 -19.00729 -17.88510 -17.43828 -16.77820 -16.29129 -15.94873 -15.49154 -15.03881 -14.67218 -14.60358 -13.86218 -13.71339 -13.25937 -13.12349 -12.63622 -12.60728 -12.48077 -11.84932 -11.64664 -11.17639 -11.09077 -10.95117 -10.88712 -10.74409 -10.49555 -10.17592 -10.04163 -9.69917 -9.23091 -9.05446 -8.73204 -7.64426 -7.53197 -6.81249 -4.42288 2.09972 2.19486 2.57723 2.79859 3.07551 3.12322 3.14279 3.61350 3.84896 3.91471 4.18598 4.62284 4.65638 4.92859 5.11374 5.50849 5.58010 5.61712 5.88173 6.07421 6.09093 6.26556 6.36172 6.70525 6.77718 6.94558 6.97543 7.00574 7.20098 7.36984 7.68848 7.74205 7.91223 8.06276 8.11188 8.17571 8.49666 8.79203 8.82328 8.91480 10.13427 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.003573 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.186600 B = 7834.609551 C = 8383.014622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.565 3.435 15 O -0.546 6.546 16 N -0.736 5.736 17 C 0.122 3.878 18 C 0.077 3.923 19 O -0.364 6.364 20 C 0.651 3.349 21 N -0.827 5.827 22 O -0.579 6.579 23 C -0.092 4.092 24 H 0.284 0.716 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.401 0.599 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.410 0.590 34 H 0.424 0.576 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 -10.862 -2.469 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.356 3.644 15 O -0.424 6.424 16 N -0.391 5.391 17 C -0.002 4.002 18 C 0.002 3.998 19 O -0.278 6.278 20 C 0.402 3.598 21 N -0.401 5.401 22 O -0.468 6.468 23 C -0.112 4.112 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.237 0.763 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.240 0.760 34 H 0.259 0.741 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.195 -9.950 -3.339 13.316 hybrid contribution 0.244 0.007 0.563 0.614 sum -7.950 -9.943 -2.776 13.030 Atomic orbital electron populations 1.69796 1.07585 1.29696 1.33607 1.25971 0.94768 1.01575 0.92298 0.86237 0.80886 0.80814 0.78686 1.18341 1.19541 1.19924 1.19623 0.98247 0.91042 1.39910 0.90033 1.17606 0.91178 0.92465 0.89177 1.21098 1.03470 0.92764 1.05814 1.20432 0.96031 0.96731 0.98405 1.20335 1.01303 0.94597 1.07554 1.19454 0.96513 0.95320 1.01832 1.18851 0.83316 0.82715 0.79560 1.90700 1.66378 1.29859 1.55496 1.45911 1.30575 1.10043 1.52546 1.21366 0.88932 0.93492 0.96399 1.23361 0.99999 0.93691 0.82740 1.86309 1.75103 1.27884 1.38501 1.18159 0.76646 0.80651 0.84331 1.42400 1.68697 1.19565 1.09388 1.91047 1.60871 1.65137 1.29770 1.21634 0.96445 0.96435 0.96711 0.90477 0.88617 0.88923 0.89300 0.76289 0.90450 0.89072 0.89426 0.90159 0.76042 0.74139 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.59 10.95 55.55 0.61 -19.98 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 7 C -0.46 -11.99 9.05 -37.73 -0.34 -12.34 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.10 2.58 5.57 -106.87 -0.60 1.99 16 10 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 11 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 12 C -0.22 -4.54 9.55 -38.92 -0.37 -4.92 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.62 16 14 C 0.56 12.18 7.77 -12.31 -0.10 12.08 16 15 O -0.55 -13.48 16.33 5.32 0.09 -13.39 16 16 N -0.74 -11.91 5.46 -61.24 -0.33 -12.25 16 17 C 0.12 1.59 6.07 -4.04 -0.02 1.56 16 18 C 0.08 0.83 5.60 37.16 0.21 1.04 16 19 O -0.36 -4.25 10.22 -40.32 -0.41 -4.66 16 20 C 0.65 7.39 9.02 54.05 0.49 7.88 16 21 N -0.83 -5.73 8.88 27.59 0.24 -5.49 16 22 O -0.58 -8.37 16.97 -19.27 -0.33 -8.69 16 23 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 24 H 0.28 6.84 8.30 -40.82 -0.34 6.51 16 25 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 26 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 27 H 0.09 1.54 6.38 -52.48 -0.33 1.21 16 28 H 0.40 5.83 6.49 -40.82 -0.26 5.57 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.41 2.06 8.94 -40.82 -0.36 1.69 16 34 H 0.42 2.07 8.93 -40.82 -0.36 1.71 16 35 H 0.13 3.83 5.74 -52.49 -0.30 3.53 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -32.75 312.75 -6.70 -39.45 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -3.72 Total: 11.86 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.53 Total: -5.16 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.52 Total: -37.72 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.65 Total: -26.75 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.75 -6.70 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180771319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.730 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds