Wall clock time and date at job start Mon Mar 30 2020 23:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48503 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46871 * 299.99514 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99626 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 197.85789 * 7 2 1 9 9 C 1.41435 * 120.00029 * 17.86125 * 7 2 1 10 10 C 1.40782 * 120.17859 * 204.36202 * 9 7 2 11 11 C 1.37709 * 120.04062 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41454 * 0.05068 * 11 10 9 13 13 C 1.39882 * 120.35542 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02157 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99420 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00215 * 359.97438 * 14 13 12 17 17 C 1.46501 * 119.99764 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46733 * 179.97438 * 17 16 14 19 19 O 1.45200 * 109.47034 * 65.00497 * 18 17 16 20 20 C 1.34639 * 116.99821 * 179.97438 * 19 18 17 21 21 N 1.34776 * 119.99603 * 179.97438 * 20 19 18 22 22 O 1.21501 * 120.00277 * 359.97438 * 20 19 18 23 23 C 1.39030 * 119.95217 * 359.97438 * 13 12 11 24 24 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.98168 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.79563 * 180.02562 * 11 10 9 27 27 H 1.08003 * 119.82123 * 179.97438 * 12 11 10 28 28 H 0.96996 * 119.99968 * 359.97438 * 16 14 13 29 29 H 1.08992 * 109.47231 * 300.00018 * 17 16 14 30 30 H 1.08999 * 109.47030 * 59.99886 * 17 16 14 31 31 H 1.09002 * 109.46890 * 185.00170 * 18 17 16 32 32 H 1.09001 * 109.47601 * 305.00235 * 18 17 16 33 33 H 0.97000 * 120.00395 * 359.97438 * 21 20 19 34 34 H 0.97001 * 119.99732 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.20691 * 179.73118 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2874 9 6 1.3520 -2.4074 -0.3746 10 6 1.8274 -3.6500 0.0858 11 6 1.1862 -4.8122 -0.2808 12 6 0.0738 -4.7693 -1.1026 13 6 -0.4127 -3.5440 -1.5703 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0251 -2.4417 -2.8536 16 7 -2.2181 -4.6534 -2.7977 17 6 -3.3964 -4.6164 -3.6675 18 6 -3.8972 -6.0418 -3.9087 19 8 -4.3623 -6.6099 -2.6560 20 6 -4.8392 -7.8683 -2.6952 21 7 -5.2863 -8.4550 -1.5672 22 8 -4.8664 -8.4752 -3.7475 23 6 0.2225 -2.3613 -1.2087 24 1 -0.4850 0.8399 -0.0004 25 1 2.6951 -3.6917 0.7276 26 1 1.5541 -5.7633 0.0751 27 1 -0.4214 -5.6867 -1.3845 28 1 -1.8806 -5.5033 -2.4742 29 1 -4.1820 -4.0307 -3.1903 30 1 -3.1303 -4.1590 -4.6204 31 1 -4.7180 -6.0221 -4.6256 32 1 -3.0841 -6.6507 -4.3040 33 1 -5.2642 -7.9707 -0.7270 34 1 -5.6302 -9.3615 -1.5955 35 1 -0.1471 -1.4134 -1.5709 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180771319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:05 Heat of formation + Delta-G solvation = -134.280866 kcal Electronic energy + Delta-G solvation = -20568.390328 eV Core-core repulsion = 17143.690126 eV Total energy + Delta-G solvation = -3424.700202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48005 -40.81920 -38.85804 -37.81161 -35.88360 -35.51510 -34.78379 -32.36671 -31.28627 -30.40255 -27.20158 -25.11848 -23.66526 -22.83431 -22.49266 -21.27595 -19.80148 -19.55427 -18.43491 -17.81812 -17.75626 -17.07298 -16.88635 -16.59661 -16.37312 -15.98925 -15.40375 -15.08353 -14.72058 -14.50726 -14.27004 -13.99804 -13.87965 -13.43098 -12.96137 -12.85695 -12.76908 -12.52991 -12.17118 -11.91152 -11.89916 -11.77205 -11.49284 -11.07186 -10.87685 -10.78632 -10.18810 -9.46524 -9.37628 -8.65920 -6.37148 0.38666 1.01446 1.32041 1.37691 1.47561 1.53772 1.72595 2.10379 2.19944 2.22551 2.79481 3.43382 3.70747 3.73670 4.01772 4.06726 4.30400 4.43352 4.55326 4.60309 4.72691 4.92365 5.09949 5.20125 5.24598 5.32221 5.41655 5.53015 5.79286 5.87203 5.93458 6.06424 6.26352 6.29388 6.49943 6.67238 6.88990 6.95473 7.28995 7.38278 8.30999 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.003573 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.186600 B = 7834.609551 C = 8383.014622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.497 4.497 8 H 0.083 0.917 9 C 0.067 3.933 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.139 4.139 14 C 0.562 3.438 15 O -0.587 6.587 16 N -0.713 5.713 17 C 0.121 3.879 18 C 0.084 3.916 19 O -0.372 6.372 20 C 0.647 3.353 21 N -0.804 5.804 22 O -0.614 6.614 23 C -0.131 4.131 24 H 0.287 0.713 25 H 0.108 0.892 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.412 0.588 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.422 0.578 34 H 0.435 0.565 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 -13.151 -2.290 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.189 1.189 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.065 3.935 10 C -0.237 4.237 11 C -0.114 4.114 12 C -0.217 4.217 13 C -0.142 4.142 14 C 0.352 3.648 15 O -0.469 6.469 16 N -0.366 5.366 17 C -0.002 4.002 18 C 0.009 3.991 19 O -0.286 6.286 20 C 0.398 3.602 21 N -0.379 5.379 22 O -0.506 6.506 23 C -0.151 4.151 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.250 0.750 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.107 0.893 33 H 0.253 0.747 34 H 0.272 0.728 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.304 -12.312 -3.125 15.176 hybrid contribution 0.192 0.474 0.509 0.721 sum -8.112 -11.838 -2.616 14.587 Atomic orbital electron populations 1.69890 1.09216 1.30567 1.35294 1.26846 0.95409 1.04930 0.91338 0.85154 0.79637 0.76136 0.78772 1.17515 1.19526 1.18881 1.19889 0.98580 0.92235 1.41930 0.89856 1.17948 0.91785 0.93898 0.89887 1.21407 1.03888 0.92796 1.05612 1.20916 0.95367 0.97698 0.97382 1.20830 1.00509 0.95067 1.05295 1.19779 0.97032 0.95483 1.01953 1.18690 0.83189 0.83498 0.79447 1.90678 1.67413 1.31686 1.57084 1.45716 1.30547 1.08757 1.51605 1.21544 0.87329 0.95322 0.95971 1.23306 1.00903 0.92032 0.82859 1.86289 1.75283 1.28236 1.38780 1.18367 0.76689 0.80328 0.84819 1.42329 1.66980 1.19923 1.08701 1.91030 1.62509 1.65771 1.31264 1.21441 0.98247 0.96433 0.98993 0.90286 0.87391 0.84426 0.84819 0.74979 0.91097 0.88160 0.87661 0.89296 0.74672 0.72836 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.75 10.95 21.82 0.24 -45.51 16 2 C 0.03 1.55 5.14 85.25 0.44 1.99 16 3 Si 0.98 39.47 29.60 68.60 2.03 41.50 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.50 -26.99 9.05 23.47 0.21 -26.78 16 8 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 10 C -0.22 -10.07 9.78 22.77 0.22 -9.85 16 11 C -0.10 -3.74 10.01 22.18 0.22 -3.52 16 12 C -0.20 -7.64 9.55 22.70 0.22 -7.43 16 13 C -0.14 -6.51 5.87 -20.13 -0.12 -6.63 16 14 C 0.56 24.14 7.77 86.80 0.67 24.81 16 15 O -0.59 -29.82 16.33 -3.87 -0.06 -29.89 16 16 N -0.71 -21.64 5.46 -465.94 -2.54 -24.19 16 17 C 0.12 2.93 6.07 86.38 0.52 3.46 16 18 C 0.08 1.58 5.60 71.98 0.40 1.99 16 19 O -0.37 -7.68 10.22 -55.48 -0.57 -8.25 16 20 C 0.65 13.05 9.02 129.79 1.17 14.22 16 21 N -0.80 -8.89 8.88 -297.02 -2.64 -11.53 16 22 O -0.61 -16.47 16.97 19.84 0.34 -16.13 16 23 C -0.13 -7.21 8.23 23.01 0.19 -7.02 16 24 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 25 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 27 H 0.13 3.93 6.38 -2.91 -0.02 3.92 16 28 H 0.41 10.55 6.49 -92.71 -0.60 9.95 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.42 2.94 8.94 -92.71 -0.83 2.12 16 34 H 0.44 3.06 8.93 -92.71 -0.83 2.23 16 35 H 0.10 6.11 5.74 -2.91 -0.02 6.09 16 Total: -1.00 -74.80 312.75 -0.26 -75.06 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -1.09 Total: 30.18 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 4.04 Total: -11.25 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -4.94 Total: -81.22 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.29 Total: -54.27 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -74.80 -0.26 -75.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180771319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.224 kcal (2) G-P(sol) polarization free energy of solvation -74.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds