Wall clock time and date at job start Tue Mar 31 2020 00:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86804 * 120.00290 * 2 1 4 4 H 1.48497 * 109.47257 * 270.00484 * 3 2 1 5 5 H 1.48505 * 109.46729 * 30.00605 * 3 2 1 6 6 H 1.48499 * 109.47152 * 150.00147 * 3 2 1 7 7 C 1.39106 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99491 * 359.97438 * 7 2 1 9 9 N 1.36795 * 120.00212 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00141 * 179.97438 * 9 7 2 11 11 O 1.21560 * 120.00012 * 0.02562 * 10 9 7 12 12 C 1.48005 * 120.00076 * 179.97438 * 10 9 7 13 13 C 1.40055 * 120.89857 * 0.02562 * 12 10 9 14 14 C 1.37936 * 119.12618 * 180.02562 * 13 12 10 15 15 N 1.31933 * 120.98299 * 359.97438 * 14 13 12 16 16 C 1.32203 * 121.99192 * 0.02562 * 15 14 13 17 17 O 1.35680 * 119.62143 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00310 * 0.02562 * 17 16 15 19 19 H 1.09001 * 110.45407 * 328.84870 * 18 17 16 20 20 C 1.54507 * 110.63168 * 206.16080 * 18 17 16 21 21 C 1.54477 * 104.06510 * 241.29717 * 20 18 17 22 22 O 1.44688 * 104.83958 * 23.98057 * 21 20 18 23 23 C 1.44428 * 105.13885 * 319.51776 * 22 21 20 24 24 C 1.38853 * 120.75883 * 0.25703 * 16 15 14 25 25 H 0.97003 * 119.99653 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99726 * 359.97438 * 9 7 2 27 27 H 1.07997 * 120.44082 * 359.97438 * 13 12 10 28 28 H 1.07993 * 119.50913 * 179.97438 * 14 13 12 29 29 H 1.09000 * 110.50930 * 359.94656 * 20 18 17 30 30 H 1.09006 * 110.50971 * 122.65193 * 20 18 17 31 31 H 1.08996 * 110.37125 * 142.80919 * 21 20 18 32 32 H 1.08999 * 110.37544 * 265.03608 * 21 20 18 33 33 H 1.09002 * 110.37130 * 281.60836 * 23 22 21 34 34 H 1.08999 * 110.37385 * 159.38239 * 23 22 21 35 35 H 1.08003 * 120.53201 * 179.72541 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4948 2.0465 -1.4000 5 1 1.4448 2.6526 0.7002 6 1 3.5449 1.4401 0.7000 7 6 2.0088 -1.2047 -0.0005 8 1 1.4687 -2.1400 -0.0005 9 7 3.3767 -1.2047 0.0000 10 6 4.0506 -2.3719 0.0000 11 8 3.4428 -3.4246 -0.0010 12 6 5.5307 -2.3719 0.0000 13 6 6.2499 -1.1701 0.0005 14 6 7.6286 -1.2128 0.0000 15 7 8.2724 -2.3643 -0.0006 16 6 7.6356 -3.5229 -0.0011 17 8 8.3462 -4.6787 -0.0021 18 6 9.7706 -4.5647 -0.0020 19 1 10.0805 -3.6626 -0.5295 20 6 10.4168 -5.8144 -0.6407 21 6 11.2733 -6.4162 0.4953 22 8 10.6623 -5.9343 1.7152 23 6 10.3131 -4.5593 1.4444 24 6 6.2479 -3.5704 -0.0064 25 1 -0.4850 0.8401 0.0004 26 1 3.8617 -0.3646 0.0004 27 1 5.7319 -0.2225 0.0005 28 1 8.1893 -0.2899 0.0000 29 1 9.6500 -6.5216 -0.9566 30 1 11.0463 -5.5301 -1.4840 31 1 11.2403 -7.5050 0.4593 32 1 12.3028 -6.0658 0.4209 33 1 11.1948 -3.9225 1.5166 34 1 9.5431 -4.2199 2.1372 35 1 5.7314 -4.5189 -0.0113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185720655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:35 Heat of formation + Delta-G solvation = -71.884074 kcal Electronic energy + Delta-G solvation = -20793.763635 eV Core-core repulsion = 17371.769160 eV Total energy + Delta-G solvation = -3421.994475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75239 -39.56748 -38.30854 -37.07465 -34.30385 -32.41258 -32.03434 -31.70563 -30.11232 -28.87165 -25.92148 -23.96471 -23.25735 -22.84413 -21.43447 -19.89772 -19.13605 -17.84783 -17.21580 -16.65755 -16.21674 -15.80755 -15.39656 -15.10864 -15.04681 -14.89607 -14.28713 -13.85681 -13.53531 -13.47738 -13.12808 -13.00678 -12.53979 -12.44781 -12.24909 -11.81873 -11.66361 -11.40295 -11.19742 -11.05700 -10.77465 -10.21480 -10.02206 -9.89407 -9.66742 -9.49107 -8.77317 -8.43686 -8.41058 -6.59670 -4.01685 1.04316 1.30845 2.87965 2.89593 2.92981 3.01108 3.49581 3.69467 3.88070 4.18811 4.23420 4.31515 4.37958 4.54370 4.75725 4.80578 5.01910 5.08722 5.12888 5.19263 5.29958 5.34822 5.36987 5.45070 5.48814 5.64575 5.68322 5.91359 6.08618 6.35070 6.44444 6.56271 7.29503 7.30641 7.88804 7.91498 8.33138 8.68611 9.14159 9.59975 10.51269 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041270 B = 0.003533 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.303185 B = 7923.526466 C = 8356.348887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.299 4.299 8 H 0.127 0.873 9 N -0.557 5.557 10 C 0.466 3.534 11 O -0.572 6.572 12 C -0.016 4.016 13 C -0.201 4.201 14 C 0.135 3.865 15 N -0.547 5.547 16 C 0.313 3.687 17 O -0.291 6.291 18 C 0.060 3.940 19 H 0.104 0.896 20 C -0.155 4.155 21 C 0.045 3.955 22 O -0.371 6.371 23 C 0.033 3.967 24 C -0.146 4.146 25 H 0.280 0.720 26 H 0.373 0.627 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.752 -2.406 -0.970 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.428 4.428 8 H 0.144 0.856 9 N -0.194 5.194 10 C 0.254 3.746 11 O -0.457 6.457 12 C -0.027 4.027 13 C -0.223 4.223 14 C -0.019 4.019 15 N -0.272 5.272 16 C 0.135 3.865 17 O -0.199 6.199 18 C 0.002 3.998 19 H 0.122 0.878 20 C -0.193 4.193 21 C -0.032 4.032 22 O -0.290 6.290 23 C -0.045 4.045 24 C -0.168 4.168 25 H 0.091 0.909 26 H 0.208 0.792 27 H 0.152 0.848 28 H 0.177 0.823 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 21.866 -3.381 -0.771 22.139 hybrid contribution -0.197 1.749 -0.195 1.771 sum 21.670 -1.631 -0.966 21.752 Atomic orbital electron populations 1.69578 1.05882 1.28366 1.45589 1.25173 0.95618 0.98443 0.96900 0.86660 0.80045 0.83440 0.79423 1.18994 1.19535 1.19096 1.19602 0.79089 0.97115 1.46957 0.85584 1.42179 1.07714 1.06401 1.63073 1.17366 0.85128 0.84783 0.87314 1.90661 1.68552 1.30551 1.55902 1.20519 0.95403 0.92468 0.94357 1.22167 0.95513 0.98613 1.05988 1.22179 0.91381 0.94458 0.93925 1.67047 1.41586 0.98275 1.20282 1.19613 0.88720 0.84864 0.93320 1.86365 1.19301 1.26544 1.87682 1.23668 0.78946 1.00138 0.97008 0.87809 1.23112 0.99959 0.97172 0.99013 1.23471 0.95945 1.00323 0.83444 1.89233 1.79826 1.25684 1.34234 1.23872 1.00155 0.84201 0.96235 1.21056 0.90375 1.00320 1.05053 0.90929 0.79236 0.84766 0.82308 0.88903 0.89138 0.88665 0.91964 0.90927 0.88479 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.63 13.95 55.50 0.77 -22.86 16 2 C 0.05 1.17 5.50 -17.45 -0.10 1.08 16 3 Si 0.88 18.09 27.74 -169.99 -4.72 13.37 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -4.93 6.52 56.52 0.37 -4.56 16 7 C -0.30 -8.14 10.16 -15.02 -0.15 -8.29 16 8 H 0.13 3.92 7.38 -52.49 -0.39 3.53 16 9 N -0.56 -13.10 5.04 -11.79 -0.06 -13.16 16 10 C 0.47 10.96 7.74 -12.26 -0.09 10.87 16 11 O -0.57 -15.69 16.01 5.31 0.09 -15.61 16 12 C -0.02 -0.31 5.91 -104.68 -0.62 -0.92 16 13 C -0.20 -3.08 9.61 -39.01 -0.37 -3.45 16 14 C 0.14 1.78 11.16 -17.62 -0.20 1.58 16 15 N -0.55 -7.86 8.66 -13.39 -0.12 -7.98 16 16 C 0.31 4.97 7.48 -17.16 -0.13 4.85 16 17 O -0.29 -4.30 9.76 -18.74 -0.18 -4.48 16 18 C 0.06 0.68 3.32 -25.16 -0.08 0.59 16 19 H 0.10 1.13 7.09 -51.93 -0.37 0.76 16 20 C -0.15 -1.35 6.90 -25.17 -0.17 -1.53 16 21 C 0.05 0.38 7.63 37.93 0.29 0.67 16 22 O -0.37 -4.52 11.67 -35.23 -0.41 -4.93 16 23 C 0.03 0.36 7.37 37.94 0.28 0.64 16 24 C -0.15 -2.63 9.61 -38.82 -0.37 -3.00 16 25 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.37 7.59 3.90 -40.82 -0.16 7.43 16 27 H 0.13 1.84 6.53 -52.49 -0.34 1.49 16 28 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.09 0.87 8.00 -51.93 -0.42 0.45 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.20 8.09 -51.93 -0.42 0.78 16 35 H 0.15 2.80 7.74 -52.48 -0.41 2.40 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -31.82 303.63 -5.55 -37.38 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.78 Total: 10.62 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.72 Total: 3.08 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.60 Total: -44.00 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.51 Total: -25.03 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.72 Total: 13.37 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.82 -5.55 -37.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185720655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.507 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds