Wall clock time and date at job start Tue Mar 31 2020 00:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86804 * 120.00290 * 2 1 4 4 H 1.48497 * 109.47257 * 270.00484 * 3 2 1 5 5 H 1.48505 * 109.46729 * 30.00605 * 3 2 1 6 6 H 1.48499 * 109.47152 * 150.00147 * 3 2 1 7 7 C 1.39106 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99491 * 359.97438 * 7 2 1 9 9 N 1.36795 * 120.00212 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00141 * 179.97438 * 9 7 2 11 11 O 1.21560 * 120.00012 * 0.02562 * 10 9 7 12 12 C 1.48005 * 120.00076 * 179.97438 * 10 9 7 13 13 C 1.40055 * 120.89857 * 0.02562 * 12 10 9 14 14 C 1.37936 * 119.12618 * 180.02562 * 13 12 10 15 15 N 1.31933 * 120.98299 * 359.97438 * 14 13 12 16 16 C 1.32203 * 121.99192 * 0.02562 * 15 14 13 17 17 O 1.35680 * 119.62143 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00310 * 0.02562 * 17 16 15 19 19 H 1.09001 * 110.45407 * 328.84870 * 18 17 16 20 20 C 1.54507 * 110.63168 * 206.16080 * 18 17 16 21 21 C 1.54477 * 104.06510 * 241.29717 * 20 18 17 22 22 O 1.44688 * 104.83958 * 23.98057 * 21 20 18 23 23 C 1.44428 * 105.13885 * 319.51776 * 22 21 20 24 24 C 1.38853 * 120.75883 * 0.25703 * 16 15 14 25 25 H 0.97003 * 119.99653 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99726 * 359.97438 * 9 7 2 27 27 H 1.07997 * 120.44082 * 359.97438 * 13 12 10 28 28 H 1.07993 * 119.50913 * 179.97438 * 14 13 12 29 29 H 1.09000 * 110.50930 * 359.94656 * 20 18 17 30 30 H 1.09006 * 110.50971 * 122.65193 * 20 18 17 31 31 H 1.08996 * 110.37125 * 142.80919 * 21 20 18 32 32 H 1.08999 * 110.37544 * 265.03608 * 21 20 18 33 33 H 1.09002 * 110.37130 * 281.60836 * 23 22 21 34 34 H 1.08999 * 110.37385 * 159.38239 * 23 22 21 35 35 H 1.08003 * 120.53201 * 179.72541 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4948 2.0465 -1.4000 5 1 1.4448 2.6526 0.7002 6 1 3.5449 1.4401 0.7000 7 6 2.0088 -1.2047 -0.0005 8 1 1.4687 -2.1400 -0.0005 9 7 3.3767 -1.2047 0.0000 10 6 4.0506 -2.3719 0.0000 11 8 3.4428 -3.4246 -0.0010 12 6 5.5307 -2.3719 0.0000 13 6 6.2499 -1.1701 0.0005 14 6 7.6286 -1.2128 0.0000 15 7 8.2724 -2.3643 -0.0006 16 6 7.6356 -3.5229 -0.0011 17 8 8.3462 -4.6787 -0.0021 18 6 9.7706 -4.5647 -0.0020 19 1 10.0805 -3.6626 -0.5295 20 6 10.4168 -5.8144 -0.6407 21 6 11.2733 -6.4162 0.4953 22 8 10.6623 -5.9343 1.7152 23 6 10.3131 -4.5593 1.4444 24 6 6.2479 -3.5704 -0.0064 25 1 -0.4850 0.8401 0.0004 26 1 3.8617 -0.3646 0.0004 27 1 5.7319 -0.2225 0.0005 28 1 8.1893 -0.2899 0.0000 29 1 9.6500 -6.5216 -0.9566 30 1 11.0463 -5.5301 -1.4840 31 1 11.2403 -7.5050 0.4593 32 1 12.3028 -6.0658 0.4209 33 1 11.1948 -3.9225 1.5166 34 1 9.5431 -4.2199 2.1372 35 1 5.7314 -4.5189 -0.0113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185720655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:34 Heat of formation + Delta-G solvation = -97.624598 kcal Electronic energy + Delta-G solvation = -20794.879828 eV Core-core repulsion = 17371.769160 eV Total energy + Delta-G solvation = -3423.110667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94767 -40.75532 -39.84408 -38.23377 -36.28799 -34.15611 -33.42756 -32.82171 -31.23015 -29.71081 -27.73286 -25.31507 -24.46949 -23.82449 -22.47116 -21.47986 -20.84496 -19.31477 -18.43407 -17.62630 -17.31395 -17.17353 -16.73801 -16.46147 -16.20632 -16.05931 -15.69579 -15.58940 -14.99299 -14.79282 -14.56157 -14.27233 -14.08859 -13.51676 -13.18388 -13.06359 -12.91379 -12.53070 -12.50221 -12.05025 -11.97969 -11.93815 -11.66930 -11.07328 -10.96842 -10.79804 -10.56862 -10.41488 -9.58926 -8.55295 -6.13775 -0.34652 0.09291 1.27126 1.34923 1.42707 1.80194 1.91969 2.15877 2.63758 2.72992 2.95469 3.13263 3.22809 3.49314 3.73942 3.75627 3.94599 3.96879 4.02387 4.07632 4.20066 4.41151 4.50219 4.64572 4.66181 4.78332 4.79331 4.86604 4.99343 5.09033 5.27250 5.42851 5.72487 5.79516 6.19780 6.40416 6.67977 6.70331 7.16638 7.71810 8.60660 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041270 B = 0.003533 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.303185 B = 7923.526466 C = 8356.348887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.959 3.041 4 H -0.249 1.249 5 H -0.267 1.267 6 H -0.225 1.225 7 C -0.337 4.337 8 H 0.061 0.939 9 N -0.553 5.553 10 C 0.469 3.531 11 O -0.623 6.623 12 C -0.036 4.036 13 C -0.191 4.191 14 C 0.156 3.844 15 N -0.531 5.531 16 C 0.318 3.682 17 O -0.307 6.307 18 C 0.050 3.950 19 H 0.115 0.885 20 C -0.151 4.151 21 C 0.041 3.959 22 O -0.402 6.402 23 C 0.033 3.967 24 C -0.166 4.166 25 H 0.287 0.713 26 H 0.393 0.607 27 H 0.160 0.840 28 H 0.216 0.784 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.579 0.482 -1.323 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.207 4.207 3 Si 0.777 3.223 4 H -0.172 1.172 5 H -0.191 1.191 6 H -0.148 1.148 7 C -0.466 4.466 8 H 0.079 0.921 9 N -0.191 5.191 10 C 0.258 3.742 11 O -0.511 6.511 12 C -0.047 4.047 13 C -0.212 4.212 14 C 0.001 3.999 15 N -0.256 5.256 16 C 0.140 3.860 17 O -0.215 6.215 18 C -0.006 4.006 19 H 0.133 0.867 20 C -0.188 4.188 21 C -0.035 4.035 22 O -0.321 6.321 23 C -0.043 4.043 24 C -0.188 4.188 25 H 0.097 0.903 26 H 0.230 0.770 27 H 0.177 0.823 28 H 0.233 0.767 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 26.725 -0.517 -1.124 26.754 hybrid contribution -1.517 0.648 -0.089 1.652 sum 25.209 0.131 -1.213 25.238 Atomic orbital electron populations 1.69737 1.08300 1.30125 1.46891 1.26252 0.96554 1.02959 0.94951 0.85465 0.79942 0.76218 0.80708 1.17246 1.19144 1.14840 1.19109 0.80880 0.95638 1.50956 0.92079 1.41841 1.06227 1.07234 1.63816 1.18224 0.87306 0.83954 0.84725 1.90622 1.70557 1.32606 1.57266 1.20122 0.92308 0.94712 0.97510 1.22459 0.96546 0.97738 1.04505 1.23062 0.90659 0.95699 0.90470 1.67249 1.41126 0.98124 1.19108 1.19482 0.87918 0.85840 0.92716 1.86361 1.21456 1.26359 1.87301 1.24043 0.76920 1.01901 0.97744 0.86712 1.23181 0.99910 0.95782 0.99957 1.23715 0.96872 1.01045 0.81826 1.89201 1.80435 1.26305 1.36182 1.23901 1.00660 0.84358 0.95426 1.20957 0.91797 0.99394 1.06678 0.90344 0.76951 0.82297 0.76745 0.90071 0.86188 0.87725 0.89361 0.88300 0.90467 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.77 13.95 21.69 0.30 -52.46 16 2 C -0.01 -0.29 5.50 84.98 0.47 0.18 16 3 Si 0.96 35.88 27.74 68.60 1.90 37.78 16 4 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.23 -6.89 6.52 99.48 0.65 -6.24 16 7 C -0.34 -19.47 10.16 84.13 0.85 -18.62 16 8 H 0.06 4.21 7.38 -2.91 -0.02 4.19 16 9 N -0.55 -26.40 5.04 -309.50 -1.56 -27.96 16 10 C 0.47 22.90 7.74 86.83 0.67 23.57 16 11 O -0.62 -36.84 16.01 -3.90 -0.06 -36.90 16 12 C -0.04 -1.33 5.91 -19.90 -0.12 -1.44 16 13 C -0.19 -5.08 9.61 22.64 0.22 -4.86 16 14 C 0.16 3.22 11.16 84.61 0.94 4.17 16 15 N -0.53 -13.11 8.66 -309.17 -2.68 -15.79 16 16 C 0.32 9.63 7.48 84.78 0.63 10.27 16 17 O -0.31 -8.77 9.76 -89.98 -0.88 -9.65 16 18 C 0.05 1.01 3.32 31.61 0.11 1.12 16 19 H 0.12 2.06 7.09 -2.39 -0.02 2.04 16 20 C -0.15 -2.24 6.90 31.61 0.22 -2.02 16 21 C 0.04 0.59 7.63 72.48 0.55 1.14 16 22 O -0.40 -9.13 11.67 -148.98 -1.74 -10.87 16 23 C 0.03 0.67 7.37 72.49 0.53 1.20 16 24 C -0.17 -6.05 9.61 22.76 0.22 -5.83 16 25 H 0.29 14.93 8.31 -92.71 -0.77 14.16 16 26 H 0.39 15.13 3.90 -92.71 -0.36 14.77 16 27 H 0.16 3.44 6.53 -2.91 -0.02 3.42 16 28 H 0.22 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.08 1.41 8.00 -2.39 -0.02 1.39 16 30 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 35 H 0.13 5.13 7.74 -2.91 -0.02 5.11 16 Total: -1.00 -78.11 303.63 1.30 -76.81 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.71 Total: 30.18 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.30 Total: 8.87 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -3.94 Total: -96.21 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -2.68 Total: -57.43 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 1.90 Total: 37.78 kcal Total: -78.11 1.30 -76.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185720655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.818 kcal (2) G-P(sol) polarization free energy of solvation -78.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds