Wall clock time and date at job start Tue Mar 31 2020 00:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48491 * 109.47116 * 269.99437 * 3 2 1 5 5 H 1.48492 * 109.47096 * 29.99695 * 3 2 1 6 6 H 1.48506 * 109.46749 * 149.99692 * 3 2 1 7 7 C 1.39103 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00561 * 180.02562 * 7 2 1 9 9 N 1.36804 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99598 * 180.27623 * 9 7 2 11 11 O 1.21563 * 120.00283 * 359.71934 * 10 9 7 12 12 C 1.48008 * 119.99670 * 179.72222 * 10 9 7 13 13 C 1.40062 * 120.90092 * 359.97438 * 12 10 9 14 14 C 1.37930 * 119.12665 * 179.97438 * 13 12 10 15 15 N 1.31933 * 120.98228 * 0.02562 * 14 13 12 16 16 C 1.32201 * 121.99483 * 359.97438 * 15 14 13 17 17 O 1.35681 * 119.62581 * 180.02562 * 16 15 14 18 18 C 1.42910 * 116.99802 * 0.02562 * 17 16 15 19 19 H 1.08997 * 110.75154 * 32.01433 * 18 17 16 20 20 C 1.55299 * 110.84786 * 155.71248 * 18 17 16 21 21 C 1.54947 * 100.93995 * 152.32058 * 20 18 17 22 22 O 1.43642 * 105.13812 * 323.55652 * 21 20 18 23 23 C 1.43232 * 109.97038 * 24.42675 * 22 21 20 24 24 C 1.38856 * 120.75615 * 359.71940 * 16 15 14 25 25 H 0.96999 * 119.99916 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99856 * 359.97438 * 9 7 2 27 27 H 1.07998 * 120.43281 * 359.97438 * 13 12 10 28 28 H 1.07996 * 119.50785 * 179.97438 * 14 13 12 29 29 H 1.09001 * 111.12901 * 270.23824 * 20 18 17 30 30 H 1.08995 * 111.12690 * 34.40362 * 20 18 17 31 31 H 1.08999 * 110.31316 * 204.63639 * 21 20 18 32 32 H 1.09005 * 110.31055 * 82.47325 * 21 20 18 33 33 H 1.09002 * 109.83442 * 238.77620 * 23 22 21 34 34 H 1.08997 * 109.90922 * 117.84873 * 23 22 21 35 35 H 1.07996 * 120.52928 * 180.30531 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 2.4948 2.0464 -1.4000 5 1 1.4447 2.6527 0.6999 6 1 3.5448 1.4402 0.7001 7 6 2.0088 -1.2046 0.0005 8 1 3.0888 -1.2047 0.0010 9 7 1.3248 -2.3894 0.0005 10 6 1.9987 -3.5565 0.0067 11 8 3.2143 -3.5566 0.0071 12 6 1.2586 -4.8383 0.0129 13 6 -0.1419 -4.8603 0.0130 14 6 -0.7942 -6.0755 0.0184 15 7 -0.1189 -7.2089 0.0239 16 6 1.2029 -7.2367 0.0240 17 8 1.8486 -8.4299 0.0292 18 6 1.0375 -9.6065 0.0338 19 1 0.1070 -9.4362 -0.5076 20 6 1.8132 -10.8149 -0.5578 21 6 1.1247 -11.9937 0.1751 22 8 0.8467 -11.5029 1.4962 23 6 0.7553 -10.0736 1.4779 24 6 1.9379 -6.0587 0.0124 25 1 -0.4850 0.8400 -0.0004 26 1 0.3547 -2.3893 0.0005 27 1 -0.7034 -3.9378 0.0090 28 1 -1.8739 -6.0997 0.0190 29 1 1.6689 -10.8846 -1.6360 30 1 2.8728 -10.7620 -0.3079 31 1 1.7946 -12.8522 0.2236 32 1 0.1979 -12.2643 -0.3308 33 1 1.4949 -9.6471 2.1556 34 1 -0.2448 -9.7618 1.7786 35 1 3.0175 -6.0857 0.0076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185720674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:38 Heat of formation + Delta-G solvation = -80.158631 kcal Electronic energy + Delta-G solvation = -20666.769191 eV Core-core repulsion = 17244.415905 eV Total energy + Delta-G solvation = -3422.353286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66437 -39.51708 -38.21654 -37.08819 -34.27296 -32.25290 -31.99329 -31.35249 -30.03746 -28.89284 -25.82274 -23.92149 -23.18825 -22.60076 -21.71675 -19.93838 -18.53733 -17.91256 -17.15993 -16.86113 -15.94822 -15.65691 -15.30019 -15.15123 -14.75575 -14.68784 -14.20189 -13.75479 -13.68377 -13.55279 -13.27358 -12.90218 -12.68113 -12.51210 -11.80104 -11.77292 -11.57923 -11.26671 -11.07920 -10.85326 -10.54986 -10.43943 -9.83299 -9.78997 -9.59126 -9.38806 -8.65154 -8.34012 -8.24936 -6.72739 -4.03456 1.15907 1.41151 2.85956 3.05910 3.13969 3.19810 3.61417 3.67312 3.96590 4.15567 4.33574 4.38896 4.60392 4.63977 4.78637 4.87183 5.02446 5.13123 5.20135 5.35700 5.37164 5.44448 5.48400 5.55427 5.66510 5.71555 5.80905 6.01226 6.28530 6.51927 6.64046 6.67805 7.27739 7.34629 7.78901 7.99730 8.33091 8.89619 9.23291 9.80039 10.43324 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.050862 B = 0.003177 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.382250 B = 8811.913646 C = 9149.754405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.294 4.294 8 H 0.111 0.889 9 N -0.530 5.530 10 C 0.455 3.545 11 O -0.591 6.591 12 C -0.015 4.015 13 C -0.194 4.194 14 C 0.133 3.867 15 N -0.547 5.547 16 C 0.308 3.692 17 O -0.291 6.291 18 C 0.061 3.939 19 H 0.105 0.895 20 C -0.155 4.155 21 C 0.053 3.947 22 O -0.380 6.380 23 C 0.036 3.964 24 C -0.148 4.148 25 H 0.279 0.721 26 H 0.395 0.605 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 -16.095 -0.985 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.424 4.424 8 H 0.129 0.871 9 N -0.163 5.163 10 C 0.243 3.757 11 O -0.478 6.478 12 C -0.026 4.026 13 C -0.215 4.215 14 C -0.021 4.021 15 N -0.272 5.272 16 C 0.130 3.870 17 O -0.199 6.199 18 C 0.004 3.996 19 H 0.123 0.877 20 C -0.193 4.193 21 C -0.023 4.023 22 O -0.299 6.299 23 C -0.041 4.041 24 C -0.170 4.170 25 H 0.089 0.911 26 H 0.230 0.770 27 H 0.159 0.841 28 H 0.177 0.823 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.054 -16.859 -0.795 17.152 hybrid contribution -0.066 1.738 -0.217 1.752 sum -3.120 -15.122 -1.012 15.473 Atomic orbital electron populations 1.69564 1.06268 1.29187 1.47008 1.25462 0.95736 1.00352 0.96337 0.85726 0.79370 0.79789 0.78766 1.19967 1.20550 1.18976 1.19919 0.93950 0.81943 1.46550 0.87099 1.41891 1.09648 1.04707 1.60102 1.17511 0.87442 0.82871 0.87854 1.90619 1.12938 1.86596 1.57629 1.20554 0.93241 0.94699 0.94108 1.22266 0.94319 1.00047 1.04901 1.22198 0.99590 0.86280 0.94081 1.67025 1.07565 1.32373 1.20222 1.19576 0.87934 0.85500 0.94003 1.86310 1.34104 1.11488 1.87993 1.23809 0.95623 0.83532 0.96640 0.87730 1.23369 1.01722 0.92739 1.01448 1.23326 0.99312 0.96526 0.83124 1.88428 1.93055 1.19920 1.28538 1.23567 1.02575 0.81058 0.96939 1.21024 1.02047 0.88514 1.05416 0.91104 0.76972 0.84080 0.82308 0.88979 0.88991 0.89122 0.91725 0.90372 0.90285 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.35 13.05 55.50 0.72 -21.63 16 2 C 0.03 0.65 5.50 -17.45 -0.10 0.56 16 3 Si 0.94 19.73 29.55 -169.99 -5.02 14.70 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.29 -7.82 9.68 -15.01 -0.15 -7.97 16 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 9 N -0.53 -13.10 5.23 -11.79 -0.06 -13.17 16 10 C 0.46 11.02 7.74 -12.25 -0.09 10.93 16 11 O -0.59 -16.28 16.01 5.31 0.09 -16.19 16 12 C -0.01 -0.29 5.91 -104.67 -0.62 -0.91 16 13 C -0.19 -3.18 9.61 -39.01 -0.37 -3.56 16 14 C 0.13 1.89 11.16 -17.62 -0.20 1.70 16 15 N -0.55 -8.37 8.69 -13.39 -0.12 -8.48 16 16 C 0.31 5.07 7.48 -17.16 -0.13 4.95 16 17 O -0.29 -4.35 9.85 -18.74 -0.18 -4.53 16 18 C 0.06 0.73 3.19 -24.79 -0.08 0.66 16 19 H 0.10 1.25 7.14 -51.93 -0.37 0.88 16 20 C -0.16 -1.43 6.89 -24.48 -0.17 -1.59 16 21 C 0.05 0.46 7.78 38.19 0.30 0.76 16 22 O -0.38 -4.55 11.36 -35.23 -0.40 -4.95 16 23 C 0.04 0.43 7.58 37.88 0.29 0.71 16 24 C -0.15 -2.74 9.61 -38.82 -0.37 -3.11 16 25 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 26 H 0.40 9.13 6.03 -40.82 -0.25 8.88 16 27 H 0.14 2.18 6.53 -52.49 -0.34 1.84 16 28 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.15 2.81 7.74 -52.49 -0.41 2.41 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -30.20 306.91 -5.87 -36.07 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -3.83 Total: 10.44 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.69 Total: 3.11 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.55 Total: -43.28 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.50 Total: -25.68 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.20 -5.87 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185720674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.084 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds