Wall clock time and date at job start Tue Mar 31 2020 00:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38251 * 119.99902 * 2 1 4 4 C 1.38220 * 119.99946 * 179.78816 * 3 2 1 5 5 C 1.38252 * 119.99614 * 0.46351 * 4 3 2 6 6 C 1.50705 * 119.99830 * 179.79247 * 5 4 3 7 7 H 1.08996 * 109.46966 * 159.97981 * 6 5 4 8 8 C 1.53004 * 109.46732 * 279.97915 * 6 5 4 9 9 N 1.46495 * 109.47229 * 39.97530 * 6 5 4 10 10 C 1.34780 * 120.00162 * 155.00036 * 9 6 5 11 11 O 1.21689 * 119.99585 * 0.02562 * 10 9 6 12 12 C 1.46374 * 120.00184 * 180.02562 * 10 9 6 13 13 H 1.08005 * 120.00020 * 6.55117 * 12 10 9 14 14 C 1.40049 * 120.00036 * 186.55067 * 12 10 9 15 15 N 1.30673 * 119.99846 * 353.63896 * 14 12 10 16 16 Si 1.86795 * 119.99806 * 173.64299 * 14 12 10 17 17 H 1.48499 * 109.47228 * 94.88545 * 16 14 12 18 18 H 1.48503 * 109.46887 * 214.88101 * 16 14 12 19 19 H 1.48494 * 109.47299 * 334.88110 * 16 14 12 20 20 C 1.38211 * 120.00254 * 359.76740 * 5 4 3 21 21 C 1.38217 * 119.99954 * 180.27464 * 2 1 3 22 22 N 1.48021 * 119.99955 * 359.97438 * 21 2 1 23 23 O 1.21795 * 119.99654 * 173.60964 * 22 21 2 24 24 O 1.21799 * 119.99858 * 353.61161 * 22 21 2 25 25 H 1.09002 * 109.46910 * 262.72125 * 1 2 3 26 26 H 1.08996 * 109.46925 * 142.72392 * 1 2 3 27 27 H 1.08993 * 109.47147 * 22.72183 * 1 2 3 28 28 H 1.08006 * 120.00221 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99857 * 180.26016 * 4 3 2 30 30 H 1.08996 * 109.47341 * 60.00296 * 8 6 5 31 31 H 1.08997 * 109.47127 * 179.97438 * 8 6 5 32 32 H 1.09001 * 109.47177 * 299.99738 * 8 6 5 33 33 H 0.97006 * 120.00120 * 335.00690 * 9 6 5 34 34 H 0.97000 * 119.99694 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.00100 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0044 5 6 4.2717 0.0000 -0.0008 6 6 5.7787 0.0000 -0.0007 7 1 6.1420 -0.9671 0.3468 8 6 6.2888 0.2563 -1.4203 9 7 6.2670 1.0545 0.8913 10 6 7.4890 0.9517 1.4506 11 8 8.1868 -0.0168 1.2142 12 6 7.9767 2.0051 2.3424 13 1 7.3200 2.8105 2.6365 14 6 9.2948 1.9684 2.8142 15 7 10.0508 0.9330 2.5612 16 14 9.9721 3.3996 3.8053 17 1 9.8181 3.1150 5.2546 18 1 11.4108 3.5849 3.4874 19 1 9.2260 4.6367 3.4617 20 6 3.5806 -1.1969 -0.0057 21 6 2.1981 -1.1970 -0.0057 22 7 1.4580 -2.4789 -0.0113 23 8 2.0613 -3.5298 -0.1337 24 8 0.2457 -2.4826 0.1065 25 1 -0.3633 -0.1302 1.0194 26 1 -0.3633 -0.8177 -0.6224 27 1 -0.3633 0.9478 -0.3969 28 1 1.6583 2.1327 0.0004 29 1 4.1205 2.1327 0.0087 30 1 5.9255 1.2233 -1.7679 31 1 7.3787 0.2567 -1.4203 32 1 5.9255 -0.5283 -2.0841 33 1 5.7109 1.8266 1.0796 34 1 10.9636 0.9075 2.8883 35 1 4.1206 -2.1322 -0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187727108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:19 Heat of formation + Delta-G solvation = -23.116044 kcal Electronic energy + Delta-G solvation = -21009.847345 eV Core-core repulsion = 17589.967611 eV Total energy + Delta-G solvation = -3419.879734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -42.26943 -39.96762 -37.62132 -36.67708 -34.98452 -32.67781 -32.15062 -31.86561 -29.79945 -27.62772 -26.28734 -25.87553 -23.06182 -22.88258 -21.29921 -19.77018 -18.65749 -18.33458 -17.61635 -17.44437 -16.12443 -15.91750 -15.34784 -14.88096 -14.35140 -14.16917 -14.06612 -13.48246 -13.27263 -12.91769 -12.58291 -12.53050 -12.29429 -12.07235 -11.75561 -11.50760 -11.40779 -11.17972 -11.10751 -11.04620 -10.73046 -10.67680 -10.53977 -10.30607 -9.67848 -9.04601 -8.93628 -7.77476 -7.72563 -6.29968 -4.75090 -0.16625 0.82932 1.32620 1.39807 3.07140 3.14382 3.16310 3.18439 4.00537 4.18221 4.23371 4.46730 4.50433 4.66487 4.78125 4.88280 5.02444 5.22699 5.35256 5.42766 5.52769 5.58681 5.71981 5.79831 5.90260 5.90344 5.97662 6.05138 6.16613 6.44902 6.50839 6.64710 7.33698 7.65633 7.73800 7.90568 8.19406 8.92242 9.35187 10.47430 10.65262 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.003811 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.215787 B = 7346.127486 C = 7685.551130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.026 4.026 3 C -0.121 4.121 4 C -0.055 4.055 5 C -0.077 4.077 6 C 0.189 3.811 7 H 0.091 0.909 8 C -0.154 4.154 9 N -0.761 5.761 10 C 0.556 3.444 11 O -0.577 6.577 12 C -0.546 4.546 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.765 5.765 16 Si 0.907 3.093 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.045 4.045 21 C -0.048 4.048 22 N 0.035 4.965 23 O -0.168 6.168 24 O -0.166 6.166 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.379 0.621 34 H 0.269 0.731 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 2.486 -5.804 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.028 4.028 3 C -0.140 4.140 4 C -0.073 4.073 5 C -0.078 4.078 6 C 0.082 3.918 7 H 0.109 0.891 8 C -0.213 4.213 9 N -0.418 5.418 10 C 0.360 3.640 11 O -0.459 6.459 12 C -0.583 4.583 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.393 5.393 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.064 4.064 21 C -0.131 4.131 22 N 0.551 4.449 23 O -0.382 6.382 24 O -0.379 6.379 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.211 0.789 34 H 0.080 0.920 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.544 2.257 -5.950 15.875 hybrid contribution -0.071 0.763 0.608 0.978 sum -14.614 3.019 -5.342 15.850 Atomic orbital electron populations 1.21259 0.88760 1.04133 1.04413 1.19837 0.97836 0.90566 0.94544 1.21111 0.94051 0.96999 1.01803 1.21522 0.93981 0.99008 0.92793 1.20337 0.97577 0.91603 0.98320 1.19434 0.85095 0.95689 0.91568 0.89073 1.22182 1.03072 1.00666 0.95335 1.46350 1.20461 1.23030 1.51915 1.18245 0.78363 0.87234 0.80153 1.90612 1.55941 1.33919 1.65442 1.20844 0.97656 1.09616 1.30165 0.91408 1.25695 0.96721 0.95911 0.94854 1.70014 1.07276 1.26732 1.35322 0.86361 0.78540 0.81844 0.80060 1.19794 1.20329 1.18847 1.20935 0.90674 1.00608 0.94222 1.20897 0.92314 0.83017 1.16890 1.43592 1.01012 1.02897 0.97429 1.94554 1.70085 1.20162 1.53401 1.94438 0.96494 1.93781 1.53185 0.89569 0.88636 0.91005 0.83663 0.83790 0.93025 0.90851 0.92932 0.78871 0.91979 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.68 36.01 0.31 -0.83 16 2 C -0.03 -0.29 5.88 -104.62 -0.62 -0.90 16 3 C -0.12 -1.16 9.67 -39.58 -0.38 -1.55 16 4 C -0.05 -0.62 9.06 -39.58 -0.36 -0.97 16 5 C -0.08 -1.06 4.95 -104.62 -0.52 -1.58 16 6 C 0.19 3.26 2.78 -69.08 -0.19 3.06 16 7 H 0.09 1.80 7.44 -51.93 -0.39 1.42 16 8 C -0.15 -2.44 9.46 37.16 0.35 -2.09 16 9 N -0.76 -15.39 5.02 -56.34 -0.28 -15.67 16 10 C 0.56 14.83 7.70 -12.99 -0.10 14.73 16 11 O -0.58 -17.68 14.71 5.20 0.08 -17.61 16 12 C -0.55 -14.68 9.53 -35.63 -0.34 -15.02 16 13 H 0.07 1.66 7.86 -52.48 -0.41 1.25 16 14 C 0.09 2.38 5.49 -17.37 -0.10 2.28 16 15 N -0.77 -22.21 11.86 55.55 0.66 -21.55 16 16 Si 0.91 19.40 29.56 -169.99 -5.03 14.38 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 20 C -0.04 -0.61 9.18 -39.59 -0.36 -0.98 16 21 C -0.05 -0.64 6.83 -79.95 -0.55 -1.18 16 22 N 0.03 0.51 4.45 33.96 0.15 0.66 16 23 O -0.17 -2.66 18.47 -29.46 -0.54 -3.20 16 24 O -0.17 -2.34 15.37 -29.46 -0.45 -2.80 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.10 0.93 5.88 -51.93 -0.31 0.62 16 27 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 28 H 0.15 0.94 8.05 -52.48 -0.42 0.52 16 29 H 0.14 1.42 6.92 -52.49 -0.36 1.06 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.38 6.56 6.85 -40.82 -0.28 6.28 16 34 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 35 H 0.15 2.06 7.60 -52.49 -0.40 1.66 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -33.06 309.47 -7.41 -40.47 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -3.81 Total: 5.68 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.85 Total: -5.02 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.53 Total: -36.56 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.92 Total: -23.60 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.06 -7.41 -40.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187727108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.352 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds