Wall clock time and date at job start Tue Mar 31 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38251 * 119.99902 * 2 1 4 4 C 1.38220 * 119.99946 * 179.78816 * 3 2 1 5 5 C 1.38252 * 119.99614 * 0.46351 * 4 3 2 6 6 C 1.50705 * 119.99830 * 179.79247 * 5 4 3 7 7 H 1.08996 * 109.46966 * 159.97981 * 6 5 4 8 8 C 1.53004 * 109.46732 * 279.97915 * 6 5 4 9 9 N 1.46495 * 109.47229 * 39.97530 * 6 5 4 10 10 C 1.34780 * 120.00162 * 155.00036 * 9 6 5 11 11 O 1.21689 * 119.99585 * 0.02562 * 10 9 6 12 12 C 1.46374 * 120.00184 * 180.02562 * 10 9 6 13 13 H 1.08005 * 120.00020 * 6.55117 * 12 10 9 14 14 C 1.40049 * 120.00036 * 186.55067 * 12 10 9 15 15 N 1.30673 * 119.99846 * 353.63896 * 14 12 10 16 16 Si 1.86795 * 119.99806 * 173.64299 * 14 12 10 17 17 H 1.48499 * 109.47228 * 94.88545 * 16 14 12 18 18 H 1.48503 * 109.46887 * 214.88101 * 16 14 12 19 19 H 1.48494 * 109.47299 * 334.88110 * 16 14 12 20 20 C 1.38211 * 120.00254 * 359.76740 * 5 4 3 21 21 C 1.38217 * 119.99954 * 180.27464 * 2 1 3 22 22 N 1.48021 * 119.99955 * 359.97438 * 21 2 1 23 23 O 1.21795 * 119.99654 * 173.60964 * 22 21 2 24 24 O 1.21799 * 119.99858 * 353.61161 * 22 21 2 25 25 H 1.09002 * 109.46910 * 262.72125 * 1 2 3 26 26 H 1.08996 * 109.46925 * 142.72392 * 1 2 3 27 27 H 1.08993 * 109.47147 * 22.72183 * 1 2 3 28 28 H 1.08006 * 120.00221 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99857 * 180.26016 * 4 3 2 30 30 H 1.08996 * 109.47341 * 60.00296 * 8 6 5 31 31 H 1.08997 * 109.47127 * 179.97438 * 8 6 5 32 32 H 1.09001 * 109.47177 * 299.99738 * 8 6 5 33 33 H 0.97006 * 120.00120 * 335.00690 * 9 6 5 34 34 H 0.97000 * 119.99694 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.00100 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0044 5 6 4.2717 0.0000 -0.0008 6 6 5.7787 0.0000 -0.0007 7 1 6.1420 -0.9671 0.3468 8 6 6.2888 0.2563 -1.4203 9 7 6.2670 1.0545 0.8913 10 6 7.4890 0.9517 1.4506 11 8 8.1868 -0.0168 1.2142 12 6 7.9767 2.0051 2.3424 13 1 7.3200 2.8105 2.6365 14 6 9.2948 1.9684 2.8142 15 7 10.0508 0.9330 2.5612 16 14 9.9721 3.3996 3.8053 17 1 9.8181 3.1150 5.2546 18 1 11.4108 3.5849 3.4874 19 1 9.2260 4.6367 3.4617 20 6 3.5806 -1.1969 -0.0057 21 6 2.1981 -1.1970 -0.0057 22 7 1.4580 -2.4789 -0.0113 23 8 2.0613 -3.5298 -0.1337 24 8 0.2457 -2.4826 0.1065 25 1 -0.3633 -0.1302 1.0194 26 1 -0.3633 -0.8177 -0.6224 27 1 -0.3633 0.9478 -0.3969 28 1 1.6583 2.1327 0.0004 29 1 4.1205 2.1327 0.0087 30 1 5.9255 1.2233 -1.7679 31 1 7.3787 0.2567 -1.4203 32 1 5.9255 -0.5283 -2.0841 33 1 5.7109 1.8266 1.0796 34 1 10.9636 0.9075 2.8883 35 1 4.1206 -2.1322 -0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187727108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:16 Heat of formation + Delta-G solvation = -44.499111 kcal Electronic energy + Delta-G solvation = -21010.774584 eV Core-core repulsion = 17589.967611 eV Total energy + Delta-G solvation = -3420.806973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.37263 -41.06098 -39.37131 -37.82170 -36.51474 -34.62017 -33.45336 -32.92927 -31.27864 -28.66058 -28.21002 -26.95520 -24.29506 -23.88734 -22.59072 -21.45732 -19.80579 -19.74901 -19.01683 -18.71926 -17.59414 -17.21643 -16.77396 -16.18059 -15.82085 -15.33460 -15.26410 -14.81158 -14.58733 -14.36985 -13.81388 -13.71686 -13.42025 -13.30954 -13.10162 -12.98352 -12.72694 -12.62237 -12.61802 -12.50893 -12.29194 -12.03621 -11.97862 -11.68700 -10.93701 -10.62171 -10.06745 -9.83681 -9.56475 -8.30805 -6.85894 -1.22696 -0.12398 0.28084 0.35097 1.40927 1.41706 1.57791 2.18378 2.25381 2.47218 2.95280 3.24867 3.34408 3.60190 3.66331 3.83828 3.87627 3.98878 4.31603 4.35505 4.45794 4.57978 4.68155 4.71013 4.84217 4.87903 5.03777 5.06351 5.14023 5.20650 5.29319 5.32670 5.56025 5.86115 6.17642 6.24205 6.50850 6.86800 7.51142 8.47781 8.66122 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.003811 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.215787 B = 7346.127486 C = 7685.551130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.017 4.017 3 C -0.101 4.101 4 C -0.047 4.047 5 C -0.088 4.088 6 C 0.191 3.809 7 H 0.052 0.948 8 C -0.145 4.145 9 N -0.746 5.746 10 C 0.541 3.459 11 O -0.629 6.629 12 C -0.572 4.572 13 H 0.091 0.909 14 C 0.030 3.970 15 N -0.822 5.822 16 Si 0.995 3.005 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.245 1.245 20 C -0.057 4.057 21 C -0.064 4.064 22 N 0.035 4.965 23 O -0.225 6.225 24 O -0.137 6.137 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.193 0.807 29 H 0.164 0.836 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.232 6.180 -5.553 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.019 4.019 3 C -0.119 4.119 4 C -0.065 4.065 5 C -0.089 4.089 6 C 0.085 3.915 7 H 0.070 0.930 8 C -0.204 4.204 9 N -0.401 5.401 10 C 0.345 3.655 11 O -0.516 6.516 12 C -0.609 4.609 13 H 0.109 0.891 14 C -0.185 4.185 15 N -0.451 5.451 16 Si 0.815 3.185 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.168 1.168 20 C -0.076 4.076 21 C -0.148 4.148 22 N 0.547 4.453 23 O -0.425 6.425 24 O -0.360 6.360 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.210 0.790 29 H 0.182 0.818 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.137 5.891 -5.734 19.007 hybrid contribution 0.539 -0.343 0.498 0.810 sum -16.599 5.548 -5.236 18.268 Atomic orbital electron populations 1.21361 0.86740 1.05745 1.04775 1.20313 0.99294 0.89855 0.92430 1.21570 0.93129 0.98071 0.99166 1.21771 0.95061 0.98326 0.91383 1.19885 0.95040 0.92913 1.01096 1.19352 0.87869 0.92884 0.91418 0.92951 1.22075 1.00450 1.02888 0.94984 1.45904 1.18839 1.24113 1.51281 1.18586 0.79751 0.86680 0.80460 1.90573 1.58063 1.35787 1.67180 1.21418 0.98714 1.10245 1.30500 0.89112 1.26949 0.96888 0.98985 0.95719 1.70191 1.07960 1.29721 1.37255 0.85037 0.77666 0.77853 0.77951 1.19029 1.20043 1.16755 1.20805 0.91299 1.00272 0.95269 1.21038 0.92116 0.83049 1.18561 1.43816 1.01059 1.03302 0.97117 1.94570 1.70291 1.21105 1.56548 1.94397 0.96630 1.93878 1.51108 0.88851 0.89686 0.87475 0.79000 0.81829 0.90484 0.94762 0.90845 0.76827 0.91632 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.68 71.24 0.62 -1.09 16 2 C -0.02 -0.32 5.88 -19.86 -0.12 -0.43 16 3 C -0.10 -1.42 9.67 22.27 0.22 -1.21 16 4 C -0.05 -0.89 9.06 22.27 0.20 -0.69 16 5 C -0.09 -2.35 4.95 -19.87 -0.10 -2.45 16 6 C 0.19 6.78 2.78 44.25 0.12 6.91 16 7 H 0.05 2.26 7.44 -2.39 -0.02 2.24 16 8 C -0.15 -4.69 9.46 71.98 0.68 -4.01 16 9 N -0.75 -30.34 5.02 -450.39 -2.26 -32.60 16 10 C 0.54 29.78 7.70 86.36 0.67 30.45 16 11 O -0.63 -40.82 14.71 -4.31 -0.06 -40.89 16 12 C -0.57 -30.88 9.53 24.83 0.24 -30.64 16 13 H 0.09 4.30 7.86 -2.91 -0.02 4.28 16 14 C 0.03 1.61 5.49 85.30 0.47 2.08 16 15 N -0.82 -49.35 11.86 21.84 0.26 -49.10 16 16 Si 1.00 39.42 29.56 68.60 2.03 41.45 16 17 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.24 -8.81 7.11 99.48 0.71 -8.11 16 20 C -0.06 -1.59 9.18 22.27 0.20 -1.38 16 21 C -0.06 -1.64 6.83 36.37 0.25 -1.39 16 22 N 0.03 1.02 4.45 -46.46 -0.21 0.81 16 23 O -0.23 -7.55 18.47 18.89 0.35 -7.20 16 24 O -0.14 -3.70 15.37 18.89 0.29 -3.40 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.36 5.88 -2.39 -0.01 1.34 16 27 H 0.11 0.70 8.03 -2.39 -0.02 0.68 16 28 H 0.19 1.02 8.05 -2.91 -0.02 1.00 16 29 H 0.16 2.47 6.92 -2.91 -0.02 2.45 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.40 13.10 6.85 -92.70 -0.63 12.47 16 34 H 0.27 14.94 8.29 -92.71 -0.77 14.17 16 35 H 0.14 4.14 7.60 -2.91 -0.02 4.12 16 Total: -1.00 -77.31 309.47 4.34 -72.97 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.50 Total: 21.82 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 3.45 Total: -3.87 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.21 Total: -80.88 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: 0.58 Total: -51.49 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -77.31 4.34 -72.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187727108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.473 kcal (2) G-P(sol) polarization free energy of solvation -77.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds