Wall clock time and date at job start Mon Mar 30 2020 23:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.46895 * 110.99863 * 137.58381 * 12 11 9 14 14 C 1.50697 * 109.47143 * 70.64193 * 13 12 11 15 15 C 1.38261 * 119.99983 * 259.72835 * 14 13 12 16 16 C 1.38217 * 119.99967 * 179.76865 * 15 14 13 17 17 C 1.38256 * 119.99960 * 0.47787 * 16 15 14 18 18 C 1.38219 * 120.00016 * 359.79488 * 17 16 15 19 19 C 1.38216 * 120.00319 * 79.99732 * 14 13 12 20 20 N 1.48022 * 119.99684 * 0.02562 * 19 14 13 21 21 O 1.21799 * 119.99939 * 179.97438 * 20 19 14 22 22 O 1.21795 * 119.99909 * 0.02562 * 20 19 14 23 23 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 26 26 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 27 27 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 28 28 H 1.09005 * 109.47184 * 190.63870 * 13 12 11 29 29 H 1.08999 * 109.47715 * 310.64276 * 13 12 11 30 30 H 1.08000 * 120.00001 * 359.97438 * 15 14 13 31 31 H 1.07998 * 120.00007 * 180.25836 * 16 15 14 32 32 H 1.08001 * 120.00148 * 179.77060 * 17 16 15 33 33 H 1.08001 * 120.00048 * 179.97438 * 18 17 16 34 34 H 1.08996 * 113.76309 * 220.98440 * 23 12 11 35 35 H 1.09008 * 113.85816 * 89.63955 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3281 -3.0336 -2.0711 14 6 6.1157 -2.3712 -3.1720 15 6 5.4688 -1.9101 -4.3036 16 6 6.1905 -1.2982 -5.3112 17 6 7.5606 -1.1561 -5.1919 18 6 8.2080 -1.6221 -4.0631 19 6 7.4854 -2.2295 -3.0530 20 7 8.1788 -2.7290 -1.8443 21 8 9.3859 -2.6046 -1.7396 22 8 7.5424 -3.2652 -0.9550 23 6 4.1311 -2.6032 -0.0006 24 1 -0.4850 0.8401 0.0004 25 1 3.7022 0.5733 0.9700 26 1 3.4728 -1.3367 -2.2108 27 1 4.5846 -0.0508 -1.5657 28 1 5.8876 -3.8865 -1.6868 29 1 4.3704 -3.3746 -2.4642 30 1 4.3992 -2.0250 -4.3988 31 1 5.6847 -0.9343 -6.1933 32 1 8.1250 -0.6814 -5.9808 33 1 9.2783 -1.5115 -3.9701 34 1 4.5837 -2.8845 0.9502 35 1 3.4714 -3.3728 -0.4015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189540364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:42 Heat of formation + Delta-G solvation = 13.751922 kcal Electronic energy + Delta-G solvation = -22055.519194 eV Core-core repulsion = 18637.238175 eV Total energy + Delta-G solvation = -3418.281019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.20394 -41.28962 -40.12680 -37.66037 -36.75741 -34.55449 -33.62657 -32.83010 -30.15062 -28.07896 -27.13341 -26.98344 -24.36671 -23.61123 -22.52130 -20.90827 -19.96578 -19.54807 -19.30298 -18.49367 -18.15357 -17.24875 -17.04898 -16.70464 -15.97987 -15.84875 -15.33849 -15.13033 -14.77263 -14.42684 -14.16058 -13.85150 -13.76683 -13.28744 -13.05265 -12.81150 -12.65264 -12.44854 -12.38065 -12.22045 -12.13763 -11.95376 -11.48000 -11.20720 -10.97769 -10.57200 -10.48179 -10.13741 -9.64434 -8.45780 -6.55012 -1.13334 -0.02047 0.39366 0.55312 1.20138 1.23805 1.33373 2.13723 2.32750 2.77381 3.00252 3.28189 3.39360 3.58035 3.82905 3.96020 3.99315 4.04868 4.10776 4.17389 4.37487 4.43007 4.58232 4.71610 4.74295 4.89505 4.90919 5.05077 5.09742 5.14416 5.26843 5.31743 5.41229 5.61462 6.01988 6.14561 6.50011 6.62943 6.74601 7.12584 8.69924 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.005873 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.143786 B = 4766.815754 C = 5271.203915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.028 3.972 3 Si 0.918 3.082 4 H -0.260 1.260 5 H -0.240 1.240 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.183 3.817 10 O -0.560 6.560 11 C -0.017 4.017 12 N -0.464 5.464 13 C 0.038 3.962 14 C -0.025 4.025 15 C -0.123 4.123 16 C -0.051 4.051 17 C -0.109 4.109 18 C -0.064 4.064 19 C -0.055 4.055 20 N 0.033 4.967 21 O -0.197 6.197 22 O -0.166 6.166 23 C 0.035 3.965 24 H 0.272 0.728 25 H 0.349 0.651 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.155 0.845 31 H 0.182 0.818 32 H 0.187 0.813 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.308 -1.010 -15.433 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.172 4.172 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.164 1.164 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.071 0.929 9 C 0.142 3.858 10 O -0.371 6.371 11 C -0.146 4.146 12 N -0.187 5.187 13 C -0.089 4.089 14 C -0.026 4.026 15 C -0.142 4.142 16 C -0.069 4.069 17 C -0.128 4.128 18 C -0.083 4.083 19 C -0.139 4.139 20 N 0.546 4.454 21 O -0.406 6.406 22 O -0.381 6.381 23 C -0.093 4.093 24 H 0.082 0.918 25 H 0.201 0.799 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.173 0.827 31 H 0.199 0.801 32 H 0.204 0.796 33 H 0.179 0.821 34 H 0.100 0.900 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.860 -1.046 -15.644 20.927 hybrid contribution -1.039 0.588 0.481 1.286 sum 12.822 -0.459 -15.163 19.863 Atomic orbital electron populations 1.70002 1.07778 1.28589 1.50001 1.25762 0.95569 1.02651 0.93255 0.86338 0.79735 0.79762 0.79777 1.18594 1.16445 1.20596 1.21543 0.90277 0.94262 1.51942 0.92868 1.20661 0.90369 0.89344 0.85395 1.86491 1.67382 1.24232 1.59022 1.24848 0.93562 0.96524 0.99667 1.68622 1.33163 1.08084 1.08803 1.22013 0.99304 0.96801 0.90803 1.19856 0.90699 0.95554 0.96535 1.21535 1.01972 0.98521 0.92191 1.22104 0.94297 0.91945 0.98534 1.21702 0.94997 0.98984 0.97071 1.21405 1.02309 0.93196 0.91395 1.21220 0.93230 1.11241 0.88250 1.43921 1.00668 0.98228 1.02586 1.94440 0.97736 1.62344 1.86057 1.94549 1.66250 1.43367 1.33918 1.23931 0.92447 0.95761 0.97197 0.91833 0.79946 0.90026 0.91566 0.87821 0.91746 0.82708 0.80055 0.79587 0.82077 0.90012 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 13.96 21.45 0.30 -53.93 16 2 C 0.03 1.55 5.47 84.66 0.46 2.01 16 3 Si 0.92 40.76 24.34 68.60 1.67 42.43 16 4 H -0.26 -11.19 7.06 99.48 0.70 -10.49 16 5 H -0.24 -9.98 5.27 99.48 0.52 -9.46 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -29.65 9.20 25.60 0.24 -29.42 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 9 C 0.18 8.70 1.05 -10.89 -0.01 8.69 16 10 O -0.56 -27.95 13.32 -148.98 -1.98 -29.93 16 11 C -0.02 -0.68 5.91 86.41 0.51 -0.17 16 12 N -0.46 -18.10 5.51 -915.39 -5.04 -23.15 16 13 C 0.04 1.22 3.97 85.56 0.34 1.56 16 14 C -0.02 -0.67 4.96 -19.86 -0.10 -0.76 16 15 C -0.12 -2.42 9.49 22.27 0.21 -2.21 16 16 C -0.05 -0.64 10.05 22.27 0.22 -0.41 16 17 C -0.11 -1.31 10.05 22.27 0.22 -1.09 16 18 C -0.06 -1.24 9.56 22.27 0.21 -1.03 16 19 C -0.06 -1.54 6.85 36.37 0.25 -1.29 16 20 N 0.03 1.14 4.45 -46.46 -0.21 0.93 16 21 O -0.20 -6.72 18.45 18.89 0.35 -6.37 16 22 O -0.17 -6.33 14.76 18.89 0.28 -6.05 16 23 C 0.03 1.47 7.36 86.41 0.64 2.10 16 24 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.35 16.40 3.32 -74.06 -0.25 16.15 16 26 H 0.08 3.12 7.73 -2.39 -0.02 3.10 16 27 H 0.07 2.74 6.97 -2.38 -0.02 2.72 16 28 H 0.10 3.39 5.88 -2.38 -0.01 3.38 16 29 H 0.06 1.86 7.55 -2.39 -0.02 1.84 16 30 H 0.16 2.69 8.03 -2.91 -0.02 2.67 16 31 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.19 0.69 8.06 -2.91 -0.02 0.66 16 33 H 0.16 2.67 7.61 -2.91 -0.02 2.65 16 34 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.09 3.34 7.75 -2.38 -0.02 3.32 16 Total: -1.00 -70.65 293.61 -0.74 -71.40 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.70 Total: 26.69 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.20 Total: -22.02 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -4.95 Total: -76.14 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.36 Total: -42.36 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.67 Total: 42.43 kcal Total: -70.65 -0.74 -71.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189540364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.150 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds