Wall clock time and date at job start Mon Mar 30 2020 23:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42900 * 112.94035 * 50.33270 * 9 7 2 11 11 C 1.53944 * 113.73527 * 278.76760 * 9 7 2 12 12 N 1.48189 * 86.09920 * 221.95783 * 11 9 7 13 13 C 1.46904 * 111.06803 * 137.52150 * 12 11 9 14 14 C 1.50699 * 109.47392 * 90.56563 * 13 12 11 15 15 C 1.38232 * 119.99616 * 269.72688 * 14 13 12 16 16 C 1.38247 * 119.99875 * 179.78456 * 15 14 13 17 17 C 1.38233 * 119.99694 * 0.46431 * 16 15 14 18 18 N 1.48012 * 120.00011 * 179.78810 * 17 16 15 19 19 O 1.21803 * 120.00010 * 179.97438 * 18 17 16 20 20 O 1.21797 * 120.00337 * 359.97438 * 18 17 16 21 21 C 1.38239 * 119.99815 * 359.76898 * 17 16 15 22 22 C 1.38230 * 120.00422 * 0.02562 * 21 17 16 23 23 C 1.47960 * 90.80220 * 24.60019 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99865 * 309.67049 * 10 9 7 26 26 H 1.08996 * 113.75681 * 336.24186 * 11 9 7 27 27 H 1.08999 * 113.75828 * 107.60395 * 11 9 7 28 28 H 1.09003 * 109.46971 * 210.56350 * 13 12 11 29 29 H 1.09005 * 109.47286 * 330.56060 * 13 12 11 30 30 H 1.08000 * 120.00565 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.99955 * 180.25310 * 16 15 14 32 32 H 1.08007 * 119.99677 * 180.02562 * 21 17 16 33 33 H 1.08002 * 120.00723 * 179.97438 * 22 21 17 34 34 H 1.09000 * 113.75922 * 221.08463 * 23 12 11 35 35 H 1.08994 * 113.76148 * 89.71731 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5612 -1.0132 11 6 0.7557 -2.9287 1.3923 12 7 1.1893 -4.2943 1.0139 13 6 1.8776 -4.9578 2.1293 14 6 0.8741 -5.7165 2.9590 15 6 0.2486 -5.0965 4.0245 16 6 -0.6753 -5.7911 4.7829 17 6 -0.9664 -7.1084 4.4817 18 7 -1.9521 -7.8535 5.2966 19 8 -2.2089 -9.0141 5.0309 20 8 -2.5064 -7.3061 6.2329 21 6 -0.3372 -7.7297 3.4192 22 6 0.5834 -7.0340 2.6582 23 6 2.1610 -3.7400 0.0456 24 1 -0.4850 0.8401 0.0004 25 1 -0.3473 -1.7968 -1.0267 26 1 1.3280 -2.4980 2.2139 27 1 -0.3216 -2.8297 1.5251 28 1 2.6219 -5.6505 1.7363 29 1 2.3700 -4.2089 2.7496 30 1 0.4787 -4.0684 4.2620 31 1 -1.1671 -5.3054 5.6128 32 1 -0.5650 -8.7589 3.1836 33 1 1.0753 -7.5195 1.8283 34 1 2.2043 -4.2880 -0.8956 35 1 3.1451 -3.5472 0.4725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189541408.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:45 Heat of formation + Delta-G solvation = -9.327090 kcal Electronic energy + Delta-G solvation = -20944.354525 eV Core-core repulsion = 17525.072725 eV Total energy + Delta-G solvation = -3419.281800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.28047 -41.13873 -40.06623 -37.71334 -36.34787 -34.14374 -33.84194 -32.40300 -30.32793 -28.24905 -26.91672 -26.46033 -24.14956 -24.07222 -22.30278 -20.52247 -20.37482 -19.78969 -19.23092 -18.64964 -17.22903 -16.92183 -16.85495 -16.64386 -15.87731 -15.71217 -15.61995 -14.82496 -14.56684 -14.29826 -13.97959 -13.77109 -13.40216 -13.19383 -12.81406 -12.78128 -12.66726 -12.46788 -12.33812 -12.33012 -12.28718 -12.09877 -11.86678 -11.24337 -10.69050 -10.43968 -10.36932 -10.06923 -9.60866 -8.24828 -6.42520 -1.25316 -0.00072 0.27631 0.35714 1.41119 1.45102 1.53691 2.24560 2.37281 2.97317 3.15535 3.38528 3.49719 3.56040 3.79967 3.98836 4.09183 4.20563 4.26411 4.30356 4.46575 4.53793 4.67947 4.70730 4.78403 4.81142 4.92928 5.14673 5.16354 5.21656 5.40129 5.46594 5.51045 5.74594 5.99233 6.25172 6.47182 6.63624 7.31238 7.50279 8.79546 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030877 B = 0.003646 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.612624 B = 7676.972400 C = 8026.136238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.029 3.971 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.285 1.285 7 C -0.560 4.560 8 H 0.066 0.934 9 C 0.212 3.788 10 O -0.586 6.586 11 C 0.000 4.000 12 N -0.476 5.476 13 C 0.043 3.957 14 C -0.011 4.011 15 C -0.114 4.114 16 C -0.055 4.055 17 C -0.069 4.069 18 N 0.033 4.967 19 O -0.174 6.174 20 O -0.189 6.189 21 C -0.052 4.052 22 C -0.098 4.098 23 C 0.021 3.979 24 H 0.272 0.728 25 H 0.381 0.619 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.079 0.921 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 -10.281 7.208 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.171 4.171 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.210 1.210 7 C -0.598 4.598 8 H 0.085 0.915 9 C 0.171 3.829 10 O -0.396 6.396 11 C -0.129 4.129 12 N -0.199 5.199 13 C -0.084 4.084 14 C -0.012 4.012 15 C -0.133 4.133 16 C -0.074 4.074 17 C -0.152 4.152 18 N 0.548 4.452 19 O -0.390 6.390 20 O -0.400 6.400 21 C -0.071 4.071 22 C -0.117 4.117 23 C -0.107 4.107 24 H 0.082 0.918 25 H 0.234 0.766 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.170 0.830 31 H 0.178 0.822 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.097 0.903 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.000 -10.868 6.502 13.281 hybrid contribution 0.029 1.894 0.745 2.035 sum 4.029 -8.974 7.247 12.218 Atomic orbital electron populations 1.69507 1.07184 1.28537 1.50697 1.25758 0.95683 1.02564 0.93073 0.85491 0.78637 0.78754 0.78352 1.19823 1.19376 1.21022 1.21940 0.93929 0.91801 1.52109 0.91537 1.20190 0.85976 0.92100 0.84622 1.86031 1.47500 1.49222 1.56882 1.24569 0.99484 0.88284 1.00550 1.68515 1.26084 1.15786 1.09474 1.21878 0.94448 0.98938 0.93185 1.20418 0.94177 0.94094 0.92549 1.21308 0.95888 1.01128 0.94988 1.21148 0.95679 0.90816 0.99741 1.21293 0.99620 0.94745 0.99554 1.43902 1.00274 1.00881 1.00177 1.94495 1.68265 1.01538 1.74653 1.94516 1.52743 1.71078 1.21639 1.21266 0.93042 1.02133 0.90657 1.21348 0.97137 0.93537 0.99652 1.24091 0.95190 0.94695 0.96745 0.91817 0.76612 0.91469 0.93090 0.87359 0.91632 0.83023 0.82249 0.81434 0.81236 0.90269 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.48 11.20 21.45 0.24 -47.24 16 2 C 0.03 1.46 5.40 84.66 0.46 1.92 16 3 Si 0.96 39.53 29.54 68.60 2.03 41.56 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.56 -27.81 8.61 25.60 0.22 -27.58 16 8 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.21 9.86 1.40 -10.89 -0.02 9.85 16 10 O -0.59 -30.43 13.48 -148.98 -2.01 -32.44 16 11 C 0.00 0.02 7.36 86.37 0.64 0.65 16 12 N -0.48 -16.39 6.14 -914.72 -5.62 -22.01 16 13 C 0.04 1.06 4.93 85.56 0.42 1.48 16 14 C -0.01 -0.26 5.44 -19.87 -0.11 -0.37 16 15 C -0.11 -2.57 9.70 22.27 0.22 -2.35 16 16 C -0.05 -1.25 9.56 22.27 0.21 -1.04 16 17 C -0.07 -1.69 6.85 36.38 0.25 -1.44 16 18 N 0.03 0.94 4.45 -46.47 -0.21 0.74 16 19 O -0.17 -5.03 18.45 18.88 0.35 -4.69 16 20 O -0.19 -5.66 18.45 18.89 0.35 -5.31 16 21 C -0.05 -1.07 9.56 22.27 0.21 -0.86 16 22 C -0.10 -1.92 9.70 22.27 0.22 -1.70 16 23 C 0.02 0.78 7.34 86.41 0.63 1.42 16 24 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 25 H 0.38 20.53 6.60 -74.06 -0.49 20.04 16 26 H 0.07 2.63 7.44 -2.39 -0.02 2.61 16 27 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.11 2.14 8.02 -2.39 -0.02 2.12 16 29 H 0.07 1.56 7.33 -2.38 -0.02 1.54 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.16 3.24 7.61 -2.91 -0.02 3.22 16 32 H 0.17 2.81 7.61 -2.91 -0.02 2.79 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.09 2.86 7.87 -2.39 -0.02 2.84 16 Total: -1.00 -58.05 309.88 -0.88 -58.94 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.64 Total: 30.48 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 3.35 Total: -20.02 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -5.59 Total: -68.52 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.31 Total: -42.44 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -58.05 -0.88 -58.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189541408.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.609 kcal (2) G-P(sol) polarization free energy of solvation -58.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds