Wall clock time and date at job start Mon Mar 30 2020 23:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99775 * 2 1 4 4 H 1.48500 * 109.47003 * 269.99737 * 3 2 1 5 5 H 1.48502 * 109.47140 * 29.99749 * 3 2 1 6 6 H 1.48501 * 109.46988 * 149.99684 * 3 2 1 7 7 C 1.37868 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00408 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47252 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.47064 * 180.02562 * 10 9 7 12 12 C 1.34715 * 116.99868 * 180.02562 * 11 10 9 13 13 O 1.21469 * 119.99914 * 359.97438 * 12 11 10 14 14 C 1.47738 * 119.99632 * 179.97438 * 12 11 10 15 15 C 1.39667 * 120.12188 * 359.97438 * 14 12 11 16 16 C 1.37959 * 119.99460 * 180.02562 * 15 14 12 17 17 C 1.38273 * 120.22468 * 359.74621 * 16 15 14 18 18 C 1.38947 * 120.23468 * 0.50772 * 17 16 15 19 19 N 1.39970 * 119.99738 * 179.76854 * 18 17 16 20 20 C 1.34781 * 120.00201 * 214.83304 * 19 18 17 21 21 N 1.34771 * 120.00295 * 175.38918 * 20 19 18 22 22 O 1.21595 * 119.99690 * 355.38444 * 20 19 18 23 23 C 1.38625 * 120.00458 * 359.49341 * 18 17 16 24 24 H 0.97003 * 120.00010 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47071 * 59.99687 * 9 7 2 26 26 H 1.08998 * 109.47302 * 300.00303 * 9 7 2 27 27 H 1.08995 * 109.47624 * 60.00104 * 10 9 7 28 28 H 1.09003 * 109.47488 * 299.99725 * 10 9 7 29 29 H 1.08006 * 120.00194 * 359.97438 * 15 14 12 30 30 H 1.07994 * 119.88899 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.88058 * 180.25558 * 17 16 15 32 32 H 0.97001 * 120.00393 * 34.82578 * 19 18 17 33 33 H 0.96996 * 120.00324 * 180.02562 * 21 20 19 34 34 H 0.97004 * 120.00093 * 359.72269 * 21 20 19 35 35 H 1.08000 * 120.11130 * 180.22852 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5193 -4.9195 -0.0001 12 6 2.2531 -6.0493 0.0004 13 8 3.4661 -5.9857 0.0008 14 6 1.5823 -7.3656 0.0004 15 6 0.1877 -7.4417 0.0004 16 6 -0.4359 -8.6723 0.0010 17 6 0.3152 -9.8332 -0.0039 18 6 1.7031 -9.7686 0.0014 19 7 2.4585 -10.9470 0.0014 20 6 3.6264 -10.9989 0.6722 21 7 4.3079 -12.1590 0.7501 22 8 4.0651 -9.9989 1.2071 23 6 2.3398 -8.5372 0.0008 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 -0.4025 -6.5371 0.0009 30 1 -1.5143 -8.7291 0.0014 31 1 -0.1788 -10.7936 -0.0076 32 1 2.1416 -11.7264 -0.4814 33 1 5.1481 -12.1964 1.2331 34 1 3.9559 -12.9576 0.3267 35 1 3.4185 -8.4850 0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194462626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:25 Heat of formation + Delta-G solvation = -95.246552 kcal Electronic energy + Delta-G solvation = -20279.586328 eV Core-core repulsion = 16856.578780 eV Total energy + Delta-G solvation = -3423.007548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92202 -39.85298 -38.43393 -35.96390 -35.00515 -34.02790 -33.29133 -31.38350 -30.20630 -29.46090 -25.44055 -23.94590 -23.40156 -21.30380 -21.13340 -20.48339 -18.69196 -18.46804 -17.15866 -16.74272 -16.14518 -15.89818 -15.82177 -15.62110 -15.25340 -14.89502 -14.45847 -14.29273 -13.76232 -13.41602 -12.83250 -12.69610 -12.32238 -11.97042 -11.73670 -11.19374 -10.99493 -10.77355 -10.69060 -10.65450 -10.38254 -10.17867 -10.09911 -9.58184 -9.57649 -9.25832 -9.09139 -8.40559 -8.37055 -6.06846 -4.10761 0.71345 1.22511 2.36313 2.66481 2.93536 3.21652 3.31705 3.37669 3.43010 3.81006 4.00915 4.42572 4.74754 4.76912 5.09212 5.19355 5.27732 5.29834 5.38184 5.75762 5.93064 6.12842 6.16669 6.20214 6.26671 6.32587 6.39873 6.48243 6.69845 6.79985 7.03202 7.43874 7.60627 7.67302 7.91149 8.17096 8.24565 8.32877 8.94789 9.53426 11.04757 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035376 B = 0.003024 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.312780 B = 9258.248944 C = 9976.057790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.352 6.352 12 C 0.499 3.501 13 O -0.509 6.509 14 C -0.099 4.099 15 C -0.075 4.075 16 C -0.114 4.114 17 C -0.117 4.117 18 C 0.142 3.858 19 N -0.684 5.684 20 C 0.701 3.299 21 N -0.862 5.862 22 O -0.567 6.567 23 C -0.060 4.060 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.407 0.593 33 H 0.419 0.581 34 H 0.397 0.603 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 -27.969 -1.292 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.268 6.268 12 C 0.343 3.657 13 O -0.399 6.399 14 C -0.100 4.100 15 C -0.094 4.094 16 C -0.133 4.133 17 C -0.138 4.138 18 C 0.048 3.952 19 N -0.333 5.333 20 C 0.400 3.600 21 N -0.431 5.431 22 O -0.442 6.442 23 C -0.081 4.081 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.163 0.837 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.243 0.757 33 H 0.252 0.748 34 H 0.225 0.775 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.781 -26.881 -0.861 26.906 hybrid contribution 0.595 0.070 -0.230 0.641 sum 1.375 -26.811 -1.091 26.869 Atomic orbital electron populations 1.69976 1.06079 1.26936 1.49948 1.24977 0.94918 0.99363 0.94906 0.86472 0.79793 0.82831 0.78219 1.20497 1.21070 1.19709 1.20993 0.93221 0.90128 1.51990 0.92235 1.19171 0.94188 0.88974 0.98887 1.23670 0.96423 0.78536 1.01083 1.86559 1.41916 1.15545 1.82797 1.21061 0.85698 0.85495 0.73418 1.90809 1.15062 1.88278 1.45716 1.19160 0.93780 0.90664 1.06437 1.21616 0.93344 0.99110 0.95290 1.20938 1.00235 0.91311 1.00780 1.21063 0.91486 0.99478 1.01767 1.17221 0.89885 0.85089 1.02993 1.42432 1.22019 1.14528 1.54311 1.16000 0.80455 0.84249 0.79324 1.42947 1.27867 1.10455 1.61801 1.91075 1.68603 1.33613 1.50889 1.21418 1.02172 0.89218 0.95243 0.92747 0.95321 0.95284 0.92196 0.92236 0.83736 0.84640 0.85300 0.75702 0.74836 0.77463 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.02 0.67 5.35 -27.88 -0.15 0.52 16 10 C 0.08 1.77 5.41 37.16 0.20 1.97 16 11 O -0.35 -7.51 9.47 -40.53 -0.38 -7.89 16 12 C 0.50 10.03 7.90 34.61 0.27 10.30 16 13 O -0.51 -11.52 16.13 -19.24 -0.31 -11.83 16 14 C -0.10 -1.60 5.87 -105.01 -0.62 -2.21 16 15 C -0.07 -0.98 9.61 -39.15 -0.38 -1.36 16 16 C -0.11 -1.12 10.02 -39.67 -0.40 -1.51 16 17 C -0.12 -1.04 9.96 -39.31 -0.39 -1.43 16 18 C 0.14 1.59 6.29 -83.74 -0.53 1.07 16 19 N -0.68 -5.51 5.34 -14.26 -0.08 -5.58 16 20 C 0.70 7.13 8.68 -86.92 -0.75 6.37 16 21 N -0.86 -4.29 8.88 27.64 0.25 -4.05 16 22 O -0.57 -8.98 14.61 5.28 0.08 -8.90 16 23 C -0.06 -0.91 8.24 -38.96 -0.32 -1.23 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.14 1.88 7.61 -52.48 -0.40 1.48 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.41 1.50 8.84 -40.82 -0.36 1.14 16 33 H 0.42 1.85 8.93 -40.82 -0.36 1.48 16 34 H 0.40 0.48 8.85 -40.82 -0.36 0.12 16 35 H 0.16 2.74 5.81 -52.49 -0.30 2.43 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -36.98 315.24 -7.32 -44.30 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.87 Total: -0.29 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.47 Total: -1.29 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.91 Total: -35.61 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.62 Total: -28.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.98 -7.32 -44.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194462626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.948 kcal (2) G-P(sol) polarization free energy of solvation -36.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds