Wall clock time and date at job start Mon Mar 30 2020 23:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99775 * 2 1 4 4 H 1.48500 * 109.47003 * 269.99737 * 3 2 1 5 5 H 1.48502 * 109.47140 * 29.99749 * 3 2 1 6 6 H 1.48501 * 109.46988 * 149.99684 * 3 2 1 7 7 C 1.37868 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00408 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47252 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.47064 * 180.02562 * 10 9 7 12 12 C 1.34715 * 116.99868 * 180.02562 * 11 10 9 13 13 O 1.21469 * 119.99914 * 359.97438 * 12 11 10 14 14 C 1.47738 * 119.99632 * 179.97438 * 12 11 10 15 15 C 1.39667 * 120.12188 * 359.97438 * 14 12 11 16 16 C 1.37959 * 119.99460 * 180.02562 * 15 14 12 17 17 C 1.38273 * 120.22468 * 359.74621 * 16 15 14 18 18 C 1.38947 * 120.23468 * 0.50772 * 17 16 15 19 19 N 1.39970 * 119.99738 * 179.76854 * 18 17 16 20 20 C 1.34781 * 120.00201 * 214.83304 * 19 18 17 21 21 N 1.34771 * 120.00295 * 175.38918 * 20 19 18 22 22 O 1.21595 * 119.99690 * 355.38444 * 20 19 18 23 23 C 1.38625 * 120.00458 * 359.49341 * 18 17 16 24 24 H 0.97003 * 120.00010 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47071 * 59.99687 * 9 7 2 26 26 H 1.08998 * 109.47302 * 300.00303 * 9 7 2 27 27 H 1.08995 * 109.47624 * 60.00104 * 10 9 7 28 28 H 1.09003 * 109.47488 * 299.99725 * 10 9 7 29 29 H 1.08006 * 120.00194 * 359.97438 * 15 14 12 30 30 H 1.07994 * 119.88899 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.88058 * 180.25558 * 17 16 15 32 32 H 0.97001 * 120.00393 * 34.82578 * 19 18 17 33 33 H 0.96996 * 120.00324 * 180.02562 * 21 20 19 34 34 H 0.97004 * 120.00093 * 359.72269 * 21 20 19 35 35 H 1.08000 * 120.11130 * 180.22852 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5193 -4.9195 -0.0001 12 6 2.2531 -6.0493 0.0004 13 8 3.4661 -5.9857 0.0008 14 6 1.5823 -7.3656 0.0004 15 6 0.1877 -7.4417 0.0004 16 6 -0.4359 -8.6723 0.0010 17 6 0.3152 -9.8332 -0.0039 18 6 1.7031 -9.7686 0.0014 19 7 2.4585 -10.9470 0.0014 20 6 3.6264 -10.9989 0.6722 21 7 4.3079 -12.1590 0.7501 22 8 4.0651 -9.9989 1.2071 23 6 2.3398 -8.5372 0.0008 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 -0.4025 -6.5371 0.0009 30 1 -1.5143 -8.7291 0.0014 31 1 -0.1788 -10.7936 -0.0076 32 1 2.1416 -11.7264 -0.4814 33 1 5.1481 -12.1964 1.2331 34 1 3.9559 -12.9576 0.3267 35 1 3.4185 -8.4850 0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194462626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:24 Heat of formation + Delta-G solvation = -123.383204 kcal Electronic energy + Delta-G solvation = -20280.806425 eV Core-core repulsion = 16856.578780 eV Total energy + Delta-G solvation = -3424.227644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.89399 -41.27356 -39.47386 -37.70444 -35.92009 -35.45958 -34.68534 -32.66420 -32.00874 -30.41217 -27.33666 -25.42552 -24.26590 -23.02439 -22.18509 -21.91895 -19.63287 -19.38909 -18.66763 -17.99728 -17.81703 -17.57422 -17.00146 -16.60407 -16.46796 -16.17006 -15.78522 -15.23862 -15.16040 -14.67125 -14.50712 -14.37425 -13.82488 -13.17257 -13.12528 -12.87678 -12.74441 -12.62249 -12.57063 -11.93809 -11.69996 -11.55478 -11.52629 -11.39845 -11.27725 -10.76562 -10.62293 -10.07381 -9.23554 -8.28132 -6.41425 -0.37599 0.27669 1.39621 1.42265 1.42665 1.51839 1.58420 1.78729 2.02771 2.39494 2.77563 3.06014 3.47799 3.60563 3.91623 4.10256 4.16128 4.17291 4.23286 4.36704 4.47593 4.64520 4.85415 5.07484 5.21578 5.30437 5.35286 5.38140 5.44387 5.47951 5.71544 5.80854 5.88962 5.93487 6.05158 6.63910 6.71657 6.95180 7.28065 7.51464 8.84641 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035376 B = 0.003024 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.312780 B = 9258.248944 C = 9976.057790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.089 3.911 11 O -0.354 6.354 12 C 0.496 3.504 13 O -0.546 6.546 14 C -0.129 4.129 15 C -0.082 4.082 16 C -0.100 4.100 17 C -0.086 4.086 18 C 0.143 3.857 19 N -0.666 5.666 20 C 0.693 3.307 21 N -0.835 5.835 22 O -0.630 6.630 23 C -0.082 4.082 24 H 0.269 0.731 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.139 0.861 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.432 0.568 33 H 0.424 0.576 34 H 0.419 0.581 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -30.461 -1.625 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.016 3.984 11 O -0.270 6.270 12 C 0.343 3.657 13 O -0.438 6.438 14 C -0.131 4.131 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.106 4.106 18 C 0.048 3.952 19 N -0.317 5.317 20 C 0.392 3.608 21 N -0.405 5.405 22 O -0.510 6.510 23 C -0.103 4.103 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.195 0.805 31 H 0.201 0.799 32 H 0.273 0.727 33 H 0.257 0.743 34 H 0.251 0.749 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.528 -29.483 -1.229 29.513 hybrid contribution 0.936 0.635 -0.132 1.139 sum 0.408 -28.847 -1.361 28.882 Atomic orbital electron populations 1.70089 1.07740 1.28350 1.50247 1.25953 0.95888 1.03346 0.93967 0.85312 0.78468 0.77703 0.78743 1.19397 1.20117 1.18981 1.21359 0.93646 0.91280 1.52754 0.91935 1.18969 0.94190 0.90204 0.96932 1.23238 0.95353 0.78953 1.00879 1.86547 1.41809 1.15427 1.83242 1.21929 0.85556 0.86256 0.71973 1.90772 1.16613 1.88656 1.47765 1.19002 0.95169 0.88387 1.10539 1.21708 0.91755 1.00923 0.95737 1.21407 1.02260 0.89816 0.98284 1.21604 0.89943 1.01485 0.97617 1.17350 0.91240 0.84541 1.02079 1.42206 1.21167 1.14374 1.53946 1.16317 0.80915 0.84515 0.79092 1.42710 1.27305 1.09719 1.60765 1.91057 1.70189 1.36223 1.53564 1.21246 1.00672 0.90918 0.97504 0.92222 0.97125 0.97271 0.92544 0.92248 0.84288 0.80502 0.79948 0.72717 0.74270 0.74853 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.44 0.28 -56.03 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.58 9.11 25.60 0.23 -32.35 16 8 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.92 5.35 29.85 0.16 2.08 16 10 C 0.09 4.40 5.41 71.98 0.39 4.79 16 11 O -0.35 -16.02 9.47 -56.25 -0.53 -16.55 16 12 C 0.50 21.33 7.90 70.33 0.56 21.89 16 13 O -0.55 -26.68 16.13 19.94 0.32 -26.36 16 14 C -0.13 -4.36 5.87 -20.11 -0.12 -4.48 16 15 C -0.08 -2.11 9.61 22.55 0.22 -1.89 16 16 C -0.10 -1.55 10.02 22.21 0.22 -1.33 16 17 C -0.09 -1.11 9.96 22.45 0.22 -0.89 16 18 C 0.14 2.91 6.29 38.10 0.24 3.15 16 19 N -0.67 -9.00 5.34 -317.27 -1.70 -10.70 16 20 C 0.69 13.41 8.68 179.05 1.55 14.97 16 21 N -0.84 -6.62 8.88 -184.74 -1.64 -8.26 16 22 O -0.63 -20.80 14.61 -4.01 -0.06 -20.86 16 23 C -0.08 -2.60 8.24 22.67 0.19 -2.41 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 2.79 8.14 -2.39 -0.02 2.78 16 28 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.14 3.64 7.61 -2.91 -0.02 3.62 16 30 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 32 H 0.43 1.31 8.84 -92.71 -0.82 0.49 16 33 H 0.42 3.11 8.93 -92.71 -0.83 2.28 16 34 H 0.42 -0.37 8.85 -92.70 -0.82 -1.19 16 35 H 0.12 4.63 5.81 -2.91 -0.02 4.61 16 Total: -1.00 -86.64 315.24 1.73 -84.91 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -1.30 Total: 2.59 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 4.33 Total: 4.44 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -3.05 Total: -74.99 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -0.27 Total: -63.77 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -86.64 1.73 -84.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194462626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.471 kcal (2) G-P(sol) polarization free energy of solvation -86.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds