Wall clock time and date at job start Mon Mar 30 2020 23:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48496 * 109.47253 * 240.00392 * 3 2 1 5 5 H 1.48501 * 109.46735 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47075 * 120.00005 * 3 2 1 7 7 C 1.37870 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00435 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00292 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47496 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00187 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00084 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00427 * 179.97438 * 11 10 9 14 14 C 1.39939 * 120.00285 * 185.31105 * 13 11 10 15 15 C 1.38864 * 120.06962 * 33.27532 * 14 13 11 16 16 C 1.38111 * 119.92985 * 180.02562 * 15 14 13 17 17 C 1.38279 * 120.07233 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.93340 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46775 * 90.00121 * 18 17 16 20 20 O 1.20819 * 120.00041 * 0.02562 * 19 18 17 21 21 O 1.34232 * 120.00018 * 180.02562 * 19 18 17 22 22 C 1.38275 * 120.13862 * 0.23283 * 17 16 15 23 23 C 1.38119 * 120.07179 * 359.48623 * 22 17 16 24 24 H 0.96998 * 120.00440 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46678 * 59.99772 * 9 7 2 26 26 H 1.09005 * 109.46981 * 300.00389 * 9 7 2 27 27 H 0.97000 * 120.00159 * 359.97438 * 10 9 7 28 28 H 0.97002 * 119.99619 * 5.32152 * 13 11 10 29 29 H 1.08005 * 120.03736 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.96281 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.47469 * 210.00043 * 18 17 16 32 32 H 1.09009 * 109.47084 * 330.00460 * 18 17 16 33 33 H 0.96691 * 117.00626 * 179.97438 * 21 19 18 34 34 H 1.08002 * 119.96897 * 179.72351 * 22 17 16 35 35 H 1.07997 * 120.03992 * 180.25422 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5585 -5.1056 -0.0011 13 7 2.6296 -5.9078 -0.0016 14 6 2.1671 -7.2237 -0.1143 15 6 1.0379 -7.5017 -0.8731 16 6 0.5837 -8.8014 -0.9820 17 6 1.2518 -9.8253 -0.3359 18 6 0.7530 -11.2423 -0.4563 19 6 1.4042 -11.9048 -1.6430 20 8 2.1926 -11.2896 -2.3210 21 8 1.1082 -13.1783 -1.9468 22 6 2.3734 -9.5511 0.4248 23 6 2.8362 -8.2542 0.5330 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4354 -0.0009 28 1 3.5806 -5.7329 0.0763 29 1 0.5154 -6.7024 -1.3777 30 1 -0.2948 -9.0182 -1.5717 31 1 1.0030 -11.7938 0.4500 32 1 -0.3286 -11.2365 -0.5916 33 1 1.5506 -13.5602 -2.7171 34 1 2.8905 -10.3523 0.9319 35 1 3.7146 -8.0411 1.1239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253463912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:04 Heat of formation + Delta-G solvation = -99.654323 kcal Electronic energy + Delta-G solvation = -20160.288953 eV Core-core repulsion = 16737.090270 eV Total energy + Delta-G solvation = -3423.198683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64922 -40.05562 -38.43974 -36.35544 -34.92303 -34.15072 -32.52612 -31.69326 -30.85299 -27.92612 -26.60370 -23.35705 -22.81271 -22.27745 -20.87801 -20.17321 -18.33456 -18.24698 -17.52997 -16.73640 -16.27333 -15.97981 -15.52145 -15.13694 -14.90779 -14.44186 -14.17368 -13.72563 -13.48035 -13.35099 -13.10871 -12.71923 -12.42726 -12.00997 -11.96174 -11.74285 -11.68423 -11.12475 -11.00267 -10.91027 -10.81367 -10.33309 -10.04093 -9.50543 -9.43410 -8.80800 -8.77082 -8.09565 -7.70400 -6.18672 -4.25921 1.30009 1.52473 1.99282 2.85631 3.15087 3.24250 3.29488 3.31671 3.65035 4.05835 4.29935 4.45176 4.69867 4.89324 5.03813 5.08555 5.16787 5.17509 5.21089 5.45935 5.70111 5.77367 6.07019 6.23607 6.31892 6.45988 6.59186 6.71906 7.02941 7.21380 7.37688 7.47570 7.49874 7.65842 7.80336 7.96678 8.66092 8.81209 9.16693 9.41193 10.91461 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.055452 B = 0.002695 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.816859 B =10388.122888 C =10550.494165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.722 5.722 11 C 0.690 3.310 12 O -0.581 6.581 13 N -0.696 5.696 14 C 0.191 3.809 15 C -0.121 4.121 16 C -0.080 4.080 17 C -0.116 4.116 18 C -0.065 4.065 19 C 0.475 3.525 20 O -0.503 6.503 21 O -0.522 6.522 22 C -0.082 4.082 23 C -0.157 4.157 24 H 0.267 0.733 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.389 0.611 28 H 0.403 0.597 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.409 0.591 34 H 0.121 0.879 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -23.136 -0.569 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.373 5.373 11 C 0.390 3.610 12 O -0.459 6.459 13 N -0.344 5.344 14 C 0.094 3.906 15 C -0.141 4.141 16 C -0.099 4.099 17 C -0.117 4.117 18 C -0.102 4.102 19 C 0.316 3.684 20 O -0.390 6.390 21 O -0.335 6.335 22 C -0.100 4.100 23 C -0.178 4.178 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.221 0.779 28 H 0.238 0.762 29 H 0.158 0.842 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.267 0.733 34 H 0.139 0.861 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.873 -22.679 -0.424 23.011 hybrid contribution 1.678 0.900 -0.454 1.957 sum 5.551 -21.779 -0.878 22.492 Atomic orbital electron populations 1.69960 1.06099 1.27496 1.48648 1.24939 0.94932 0.99432 0.94663 0.86452 0.79394 0.82232 0.78687 1.20055 1.21040 1.20066 1.21167 0.93260 0.90345 1.53533 0.91927 1.19054 0.87712 0.80873 0.97846 1.45790 1.11153 1.04168 1.76202 1.16167 0.85157 0.81050 0.78620 1.90896 1.13846 1.83759 1.57400 1.42887 1.10008 1.03851 1.77646 1.17594 0.95269 0.83120 0.94594 1.21235 0.97122 0.97052 0.98722 1.20824 0.99171 0.91923 0.97957 1.19070 0.97921 0.92832 1.01870 1.20190 1.01974 0.92984 0.95051 1.23596 0.79663 0.79261 0.85845 1.90764 1.33114 1.64321 1.50766 1.84535 1.68253 1.29219 1.51466 1.20624 0.95186 0.95924 0.98309 1.20774 1.02568 0.92429 1.02002 0.92325 0.95466 0.95498 0.77884 0.76174 0.84183 0.86028 0.86946 0.86846 0.73278 0.86110 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.27 7.01 5.43 -5.19 -0.03 6.98 16 10 N -0.72 -15.13 5.55 -66.41 -0.37 -15.50 16 11 C 0.69 14.10 8.30 -86.92 -0.72 13.38 16 12 O -0.58 -14.11 14.03 5.29 0.07 -14.04 16 13 N -0.70 -10.86 5.35 -14.23 -0.08 -10.94 16 14 C 0.19 2.93 6.28 -83.69 -0.53 2.40 16 15 C -0.12 -1.96 8.65 -39.40 -0.34 -2.30 16 16 C -0.08 -1.06 9.69 -39.61 -0.38 -1.45 16 17 C -0.12 -1.32 4.38 -104.59 -0.46 -1.78 16 18 C -0.06 -0.51 5.94 -29.04 -0.17 -0.68 16 19 C 0.47 4.42 8.32 36.01 0.30 4.72 16 20 O -0.50 -6.68 16.79 -18.74 -0.31 -7.00 16 21 O -0.52 -3.48 13.42 -39.26 -0.53 -4.00 16 22 C -0.08 -0.92 9.69 -39.61 -0.38 -1.30 16 23 C -0.16 -1.95 9.96 -39.39 -0.39 -2.34 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.39 6.87 8.34 -40.82 -0.34 6.53 16 28 H 0.40 4.82 8.83 -40.82 -0.36 4.46 16 29 H 0.14 2.60 6.41 -52.48 -0.34 2.26 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.11 0.69 8.08 -51.92 -0.42 0.27 16 33 H 0.41 1.17 9.10 45.56 0.41 1.59 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -35.53 315.89 -7.37 -42.90 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.11 Total: 8.96 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.52 Total: 4.35 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.29 Total: -51.63 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.77 Total: -25.04 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.53 -7.37 -42.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253463912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.751 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds