Wall clock time and date at job start Mon Mar 30 2020 23:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48496 * 109.47253 * 240.00392 * 3 2 1 5 5 H 1.48501 * 109.46735 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47075 * 120.00005 * 3 2 1 7 7 C 1.37870 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00435 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00292 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47496 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00187 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00084 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00427 * 179.97438 * 11 10 9 14 14 C 1.39939 * 120.00285 * 185.31105 * 13 11 10 15 15 C 1.38864 * 120.06962 * 33.27532 * 14 13 11 16 16 C 1.38111 * 119.92985 * 180.02562 * 15 14 13 17 17 C 1.38279 * 120.07233 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.93340 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46775 * 90.00121 * 18 17 16 20 20 O 1.20819 * 120.00041 * 0.02562 * 19 18 17 21 21 O 1.34232 * 120.00018 * 180.02562 * 19 18 17 22 22 C 1.38275 * 120.13862 * 0.23283 * 17 16 15 23 23 C 1.38119 * 120.07179 * 359.48623 * 22 17 16 24 24 H 0.96998 * 120.00440 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46678 * 59.99772 * 9 7 2 26 26 H 1.09005 * 109.46981 * 300.00389 * 9 7 2 27 27 H 0.97000 * 120.00159 * 359.97438 * 10 9 7 28 28 H 0.97002 * 119.99619 * 5.32152 * 13 11 10 29 29 H 1.08005 * 120.03736 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.96281 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.47469 * 210.00043 * 18 17 16 32 32 H 1.09009 * 109.47084 * 330.00460 * 18 17 16 33 33 H 0.96691 * 117.00626 * 179.97438 * 21 19 18 34 34 H 1.08002 * 119.96897 * 179.72351 * 22 17 16 35 35 H 1.07997 * 120.03992 * 180.25422 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5585 -5.1056 -0.0011 13 7 2.6296 -5.9078 -0.0016 14 6 2.1671 -7.2237 -0.1143 15 6 1.0379 -7.5017 -0.8731 16 6 0.5837 -8.8014 -0.9820 17 6 1.2518 -9.8253 -0.3359 18 6 0.7530 -11.2423 -0.4563 19 6 1.4042 -11.9048 -1.6430 20 8 2.1926 -11.2896 -2.3210 21 8 1.1082 -13.1783 -1.9468 22 6 2.3734 -9.5511 0.4248 23 6 2.8362 -8.2542 0.5330 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4354 -0.0009 28 1 3.5806 -5.7329 0.0763 29 1 0.5154 -6.7024 -1.3777 30 1 -0.2948 -9.0182 -1.5717 31 1 1.0030 -11.7938 0.4500 32 1 -0.3286 -11.2365 -0.5916 33 1 1.5506 -13.5602 -2.7171 34 1 2.8905 -10.3523 0.9319 35 1 3.7146 -8.0411 1.1239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253463912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:03 Heat of formation + Delta-G solvation = -126.932905 kcal Electronic energy + Delta-G solvation = -20161.471841 eV Core-core repulsion = 16737.090270 eV Total energy + Delta-G solvation = -3424.381571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69620 -41.16008 -39.64212 -37.06937 -36.39812 -35.87936 -34.43570 -32.79013 -31.87380 -29.55107 -27.98269 -25.00241 -23.94568 -23.47244 -22.06125 -21.49351 -19.89717 -19.00658 -18.81043 -18.00140 -17.44418 -17.04266 -16.83847 -16.62211 -16.24806 -15.97318 -15.57866 -15.04974 -14.70082 -14.39400 -14.24190 -14.05367 -14.04776 -13.50287 -13.13627 -12.93194 -12.71367 -12.65845 -12.45218 -12.24590 -12.10516 -11.63262 -11.51917 -11.37527 -11.09812 -10.80776 -9.94064 -9.83879 -8.95597 -8.29565 -6.46373 0.26689 0.50113 1.31064 1.43029 1.47633 1.55343 1.71751 2.02977 2.30973 2.38497 2.98307 3.05577 3.38328 3.68797 3.91057 4.08834 4.31324 4.46893 4.53155 4.62545 4.72079 4.75904 5.00352 5.11313 5.23502 5.30248 5.37257 5.43620 5.57412 5.60060 5.65784 5.71005 5.81417 6.10546 6.17710 6.64201 7.08178 7.14674 7.24108 7.57096 8.82530 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.055452 B = 0.002695 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.816859 B =10388.122888 C =10550.494165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.716 5.716 11 C 0.690 3.310 12 O -0.626 6.626 13 N -0.675 5.675 14 C 0.156 3.844 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.108 4.108 18 C -0.064 4.064 19 C 0.483 3.517 20 O -0.551 6.551 21 O -0.513 6.513 22 C -0.081 4.081 23 C -0.148 4.148 24 H 0.269 0.731 25 H -0.012 1.012 26 H -0.011 1.011 27 H 0.407 0.593 28 H 0.422 0.578 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.426 0.574 34 H 0.160 0.840 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -25.025 0.345 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.162 3.838 10 N -0.369 5.369 11 C 0.391 3.609 12 O -0.506 6.506 13 N -0.324 5.324 14 C 0.061 3.939 15 C -0.172 4.172 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.101 4.101 19 C 0.327 3.673 20 O -0.441 6.441 21 O -0.327 6.327 22 C -0.099 4.099 23 C -0.168 4.168 24 H 0.078 0.922 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.243 0.757 28 H 0.261 0.739 29 H 0.120 0.880 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.287 0.713 34 H 0.177 0.823 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.179 -24.657 0.485 25.424 hybrid contribution 0.927 1.235 -0.763 1.722 sum 7.106 -23.423 -0.278 24.478 Atomic orbital electron populations 1.70129 1.08263 1.28708 1.49764 1.26062 0.95792 1.03876 0.93816 0.85184 0.77882 0.76512 0.79488 1.18723 1.21082 1.18590 1.21561 0.94361 0.90377 1.53179 0.89730 1.18467 0.88028 0.83061 0.94232 1.45339 1.11268 1.03489 1.76796 1.16276 0.85091 0.81543 0.78035 1.90866 1.16195 1.84470 1.59104 1.42489 1.10204 1.03091 1.76640 1.17865 0.96275 0.83243 0.96514 1.21129 0.98256 0.97518 1.00337 1.21025 1.00008 0.91398 0.98617 1.19476 0.97195 0.94230 0.99956 1.20314 1.02975 0.90774 0.96040 1.23745 0.78569 0.79557 0.85420 1.90766 1.35425 1.65480 1.52455 1.84492 1.68016 1.27890 1.52326 1.21152 0.94830 0.96339 0.97606 1.21109 1.02749 0.92043 1.00946 0.92177 0.99408 0.99313 0.75710 0.73930 0.88031 0.84918 0.83458 0.84795 0.71269 0.82259 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.44 0.28 -56.00 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 42.29 29.54 68.60 2.03 44.32 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.56 -30.35 9.28 25.60 0.24 -30.12 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.29 15.84 5.43 85.63 0.46 16.31 16 10 N -0.72 -31.04 5.55 -482.29 -2.68 -33.72 16 11 C 0.69 29.53 8.30 179.05 1.49 31.02 16 12 O -0.63 -32.57 14.03 -3.99 -0.06 -32.63 16 13 N -0.68 -21.30 5.35 -317.18 -1.70 -23.00 16 14 C 0.16 4.83 6.28 38.15 0.24 5.07 16 15 C -0.15 -5.19 8.65 22.39 0.19 -4.99 16 16 C -0.09 -2.46 9.69 22.25 0.22 -2.24 16 17 C -0.11 -2.20 4.38 -19.85 -0.09 -2.29 16 18 C -0.06 -0.77 5.94 29.10 0.17 -0.60 16 19 C 0.48 7.65 8.32 71.24 0.59 8.25 16 20 O -0.55 -13.76 16.79 21.98 0.37 -13.39 16 21 O -0.51 -5.20 13.42 -51.44 -0.69 -5.89 16 22 C -0.08 -1.55 9.69 22.25 0.22 -1.33 16 23 C -0.15 -3.36 9.96 22.39 0.22 -3.13 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 27 H 0.41 14.35 8.34 -92.71 -0.77 13.58 16 28 H 0.42 9.70 8.83 -92.71 -0.82 8.88 16 29 H 0.10 4.19 6.41 -2.91 -0.02 4.17 16 30 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.15 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.13 1.14 8.08 -2.38 -0.02 1.12 16 33 H 0.43 1.27 9.10 -74.06 -0.67 0.60 16 34 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -82.25 315.89 0.87 -81.38 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -1.10 Total: 22.30 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 4.42 Total: 16.63 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.09 Total: -112.72 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.38 Total: -51.91 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -82.25 0.87 -81.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253463912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.555 kcal (2) G-P(sol) polarization free energy of solvation -82.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds