Wall clock time and date at job start Mon Mar 30 2020 23:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00239 * 2 1 4 4 H 1.48500 * 109.47103 * 269.99652 * 3 2 1 5 5 H 1.48499 * 109.47397 * 29.99166 * 3 2 1 6 6 H 1.48504 * 109.47360 * 149.99612 * 3 2 1 7 7 C 1.37883 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99653 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47443 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47233 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.47215 * 63.60935 * 12 11 10 14 14 C 1.81398 * 102.99953 * 179.97438 * 12 11 10 15 15 C 1.50694 * 109.47431 * 179.97438 * 14 12 11 16 16 C 1.32563 * 120.00603 * 117.75856 * 15 14 12 17 17 C 1.47817 * 119.99677 * 352.78681 * 16 15 14 18 18 C 1.39534 * 120.14060 * 138.06093 * 17 16 15 19 19 C 1.37973 * 119.85326 * 179.97438 * 18 17 16 20 20 C 1.38350 * 120.14281 * 359.97438 * 19 18 17 21 21 C 1.38343 * 120.28628 * 0.02562 * 20 19 18 22 22 C 1.37976 * 120.14325 * 0.02562 * 21 20 19 23 23 H 0.97007 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46922 * 60.01021 * 9 7 2 25 25 H 1.08992 * 109.47754 * 300.00551 * 9 7 2 26 26 H 1.09000 * 109.47220 * 60.00216 * 10 9 7 27 27 H 1.09005 * 109.47511 * 300.00167 * 10 9 7 28 28 H 1.09000 * 109.47187 * 59.99644 * 11 10 9 29 29 H 1.09005 * 109.46453 * 300.00263 * 11 10 9 30 30 H 1.09002 * 109.47250 * 59.99962 * 14 12 11 31 31 H 1.08996 * 109.47189 * 300.00283 * 14 12 11 32 32 H 1.08007 * 120.00099 * 297.76214 * 15 14 12 33 33 H 1.08002 * 120.00758 * 172.78108 * 16 15 14 34 34 H 1.07994 * 120.07150 * 359.95802 * 18 17 16 35 35 H 1.08000 * 119.92795 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.85222 * 179.74706 * 20 19 18 37 37 H 1.08001 * 119.92985 * 179.97438 * 21 20 19 38 38 H 1.07992 * 120.07454 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 16 6.1560 -4.3470 0.0013 13 8 5.7534 -4.9911 -1.1996 14 6 7.9585 -4.1426 0.0022 15 6 8.6177 -5.4977 0.0021 16 6 9.3890 -5.8597 -1.0135 17 6 9.4761 -5.0052 -2.2165 18 6 10.7093 -4.7839 -2.8308 19 6 10.7837 -3.9857 -3.9537 20 6 9.6391 -3.4057 -4.4710 21 6 8.4135 -3.6212 -3.8666 22 6 8.3256 -4.4165 -2.7425 23 1 -0.4850 0.8401 -0.0004 24 1 3.8744 -0.6802 0.8912 25 1 3.8752 -0.6804 -0.8887 26 1 3.6585 -3.1502 -0.8893 27 1 3.6577 -3.1507 0.8907 28 1 5.9141 -2.1232 0.8927 29 1 5.9155 -2.1225 -0.8873 30 1 8.2613 -3.5917 0.8926 31 1 8.2619 -3.5905 -0.8873 32 1 8.4618 -6.1741 0.8296 33 1 9.9537 -6.7789 -0.9620 34 1 11.6034 -5.2362 -2.4281 35 1 11.7375 -3.8139 -4.4304 36 1 9.7034 -2.7784 -5.3478 37 1 7.5237 -3.1652 -4.2750 38 1 7.3682 -4.5843 -2.2718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255515519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:15 Heat of formation + Delta-G solvation = -5.657766 kcal Electronic energy + Delta-G solvation = -18447.575173 eV Core-core repulsion = 15574.745701 eV Total energy + Delta-G solvation = -2872.829472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.49297 -35.68555 -35.33457 -34.56609 -32.09003 -31.22458 -30.30091 -28.19761 -27.39590 -23.36088 -22.64375 -22.54960 -20.29922 -19.40489 -17.47033 -16.75366 -16.67582 -16.05211 -15.68528 -15.24741 -14.86970 -14.56285 -14.31295 -13.99711 -13.59427 -13.36740 -12.89765 -12.76939 -12.70369 -12.17912 -12.11383 -12.02687 -11.73755 -11.27177 -11.10277 -11.02330 -10.83688 -10.57022 -10.10390 -9.92608 -9.77626 -9.37602 -9.19986 -9.03843 -8.55220 -8.38853 -8.02609 -6.05378 -4.03619 0.82700 1.26777 1.52448 2.30320 2.76014 3.29170 3.36475 3.39235 3.69128 3.86066 4.43653 4.49942 4.72561 4.80538 4.86354 4.96253 5.07390 5.27352 5.31253 5.35307 5.39320 5.45159 5.51062 5.64449 5.83432 5.93878 6.04799 6.17495 6.25737 6.35808 6.37951 6.46266 6.49345 6.60396 6.82812 6.87591 7.24146 7.37637 7.77094 8.52403 8.99775 9.56838 11.08100 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.003714 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.290251 B = 7537.545496 C = 8246.174445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.085 4.085 11 C -0.438 4.438 12 S 1.228 4.772 13 O -0.839 6.839 14 C -0.444 4.444 15 C -0.117 4.117 16 C -0.123 4.123 17 C -0.059 4.059 18 C -0.113 4.113 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.124 4.124 23 H 0.263 0.737 24 H 0.019 0.981 25 H 0.009 0.991 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.030 -10.098 0.486 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.576 4.576 12 S 1.430 4.570 13 O -0.834 6.834 14 C -0.578 4.578 15 C -0.136 4.136 16 C -0.143 4.143 17 C -0.059 4.059 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.142 4.142 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 22.347 -10.824 0.477 24.835 hybrid contribution 1.130 2.242 -1.895 3.145 sum 23.477 -8.582 -1.418 25.037 Atomic orbital electron populations 1.69918 1.06283 1.26882 1.51091 1.25034 0.94736 0.99155 0.94573 0.86779 0.80342 0.83670 0.78480 1.20410 1.21304 1.19017 1.21165 0.89469 0.94590 1.50860 0.90876 1.19566 0.97080 0.91730 0.96318 1.21128 0.88157 1.01123 1.01947 1.27710 1.05984 1.16837 1.07093 1.70522 0.84724 0.89086 1.12698 1.93068 1.74991 1.64748 1.50623 1.27152 1.21144 1.00704 1.08806 1.22616 0.96870 0.95103 0.98995 1.21684 1.00396 0.99232 0.92987 1.19107 0.93294 0.97714 0.95783 1.21235 0.96856 0.99121 0.95921 1.21067 0.98387 0.98219 0.96652 1.21243 0.92751 0.99900 1.00054 1.21216 0.97933 0.98838 0.95909 1.22143 0.99531 0.96288 0.96220 0.92716 0.96314 0.97269 0.92212 0.91489 0.86850 0.90112 0.85602 0.87934 0.85176 0.85684 0.86007 0.86087 0.86129 0.85887 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.20 4.04 -27.89 -0.11 -0.31 16 10 C -0.08 -1.64 5.16 -26.73 -0.14 -1.78 16 11 C -0.44 -6.38 5.92 37.16 0.22 -6.16 16 12 S 1.23 14.56 12.95 -107.50 -1.39 13.17 16 13 O -0.84 -14.84 15.61 -35.23 -0.55 -15.39 16 14 C -0.44 -4.49 5.37 36.00 0.19 -4.30 16 15 C -0.12 -1.11 9.47 -36.22 -0.34 -1.46 16 16 C -0.12 -1.29 9.77 -37.57 -0.37 -1.66 16 17 C -0.06 -0.74 5.09 -105.01 -0.53 -1.27 16 18 C -0.11 -1.23 9.79 -39.20 -0.38 -1.61 16 19 C -0.13 -1.31 10.03 -39.64 -0.40 -1.71 16 20 C -0.12 -1.38 10.04 -39.50 -0.40 -1.78 16 21 C -0.12 -1.63 10.03 -39.64 -0.40 -2.03 16 22 C -0.12 -1.79 7.29 -39.19 -0.29 -2.08 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 25 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.11 1.34 8.14 -51.92 -0.42 0.92 16 29 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.10 1.26 4.64 -51.93 -0.24 1.01 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.15 2.32 3.74 -52.49 -0.20 2.13 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -36.33 326.38 -9.73 -46.06 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.44 Total: 1.01 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: -3.37 Total: -39.64 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.77 Total: -27.27 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.55 Total: -15.39 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 14.56 SS G_CDS: -1.39 Total: 13.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.33 -9.73 -46.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255515519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.401 kcal (2) G-P(sol) polarization free energy of solvation -36.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds