Wall clock time and date at job start Mon Mar 30 2020 23:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00239 * 2 1 4 4 H 1.48500 * 109.47103 * 269.99652 * 3 2 1 5 5 H 1.48499 * 109.47397 * 29.99166 * 3 2 1 6 6 H 1.48504 * 109.47360 * 149.99612 * 3 2 1 7 7 C 1.37883 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99653 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47443 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47233 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.47215 * 63.60935 * 12 11 10 14 14 C 1.81398 * 102.99953 * 179.97438 * 12 11 10 15 15 C 1.50694 * 109.47431 * 179.97438 * 14 12 11 16 16 C 1.32563 * 120.00603 * 117.75856 * 15 14 12 17 17 C 1.47817 * 119.99677 * 352.78681 * 16 15 14 18 18 C 1.39534 * 120.14060 * 138.06093 * 17 16 15 19 19 C 1.37973 * 119.85326 * 179.97438 * 18 17 16 20 20 C 1.38350 * 120.14281 * 359.97438 * 19 18 17 21 21 C 1.38343 * 120.28628 * 0.02562 * 20 19 18 22 22 C 1.37976 * 120.14325 * 0.02562 * 21 20 19 23 23 H 0.97007 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46922 * 60.01021 * 9 7 2 25 25 H 1.08992 * 109.47754 * 300.00551 * 9 7 2 26 26 H 1.09000 * 109.47220 * 60.00216 * 10 9 7 27 27 H 1.09005 * 109.47511 * 300.00167 * 10 9 7 28 28 H 1.09000 * 109.47187 * 59.99644 * 11 10 9 29 29 H 1.09005 * 109.46453 * 300.00263 * 11 10 9 30 30 H 1.09002 * 109.47250 * 59.99962 * 14 12 11 31 31 H 1.08996 * 109.47189 * 300.00283 * 14 12 11 32 32 H 1.08007 * 120.00099 * 297.76214 * 15 14 12 33 33 H 1.08002 * 120.00758 * 172.78108 * 16 15 14 34 34 H 1.07994 * 120.07150 * 359.95802 * 18 17 16 35 35 H 1.08000 * 119.92795 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.85222 * 179.74706 * 20 19 18 37 37 H 1.08001 * 119.92985 * 179.97438 * 21 20 19 38 38 H 1.07992 * 120.07454 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 16 6.1560 -4.3470 0.0013 13 8 5.7534 -4.9911 -1.1996 14 6 7.9585 -4.1426 0.0022 15 6 8.6177 -5.4977 0.0021 16 6 9.3890 -5.8597 -1.0135 17 6 9.4761 -5.0052 -2.2165 18 6 10.7093 -4.7839 -2.8308 19 6 10.7837 -3.9857 -3.9537 20 6 9.6391 -3.4057 -4.4710 21 6 8.4135 -3.6212 -3.8666 22 6 8.3256 -4.4165 -2.7425 23 1 -0.4850 0.8401 -0.0004 24 1 3.8744 -0.6802 0.8912 25 1 3.8752 -0.6804 -0.8887 26 1 3.6585 -3.1502 -0.8893 27 1 3.6577 -3.1507 0.8907 28 1 5.9141 -2.1232 0.8927 29 1 5.9155 -2.1225 -0.8873 30 1 8.2613 -3.5917 0.8926 31 1 8.2619 -3.5905 -0.8873 32 1 8.4618 -6.1741 0.8296 33 1 9.9537 -6.7789 -0.9620 34 1 11.6034 -5.2362 -2.4281 35 1 11.7375 -3.8139 -4.4304 36 1 9.7034 -2.7784 -5.3478 37 1 7.5237 -3.1652 -4.2750 38 1 7.3682 -4.5843 -2.2718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255515519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:15 Heat of formation + Delta-G solvation = -28.874819 kcal Electronic energy + Delta-G solvation = -18448.581940 eV Core-core repulsion = 15574.745701 eV Total energy + Delta-G solvation = -2873.836239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34553 -36.86134 -36.37241 -36.13408 -34.15121 -32.09771 -31.14484 -29.94928 -28.28876 -25.10748 -23.52607 -23.46127 -22.02308 -20.25180 -19.00388 -18.36733 -17.58326 -16.92991 -16.63123 -16.54909 -16.13670 -15.97076 -15.47889 -15.21955 -14.84738 -14.49478 -14.28410 -14.10187 -13.86496 -13.56906 -13.31348 -13.03882 -12.86906 -12.80046 -12.54730 -12.29350 -11.95660 -11.83393 -11.76845 -11.55189 -11.37049 -11.16585 -10.79273 -10.51930 -9.95275 -9.31016 -9.02614 -8.31541 -6.36284 -0.03151 0.36063 0.56705 1.33829 1.35147 1.47690 1.49943 1.80066 2.34121 2.80559 2.84970 3.03542 3.72896 3.93081 4.01040 4.02446 4.03529 4.13896 4.20900 4.27066 4.46939 4.55294 4.56985 4.75251 4.79285 4.88494 4.99440 5.00530 5.07709 5.08581 5.37376 5.42280 5.44657 5.51496 5.52893 5.62577 5.63962 5.82455 6.02749 6.25926 6.71922 7.28351 8.85500 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.003714 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.290251 B = 7537.545496 C = 8246.174445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.238 1.238 7 C -0.539 4.539 8 H 0.031 0.969 9 C -0.009 4.009 10 C -0.085 4.085 11 C -0.441 4.441 12 S 1.286 4.714 13 O -0.902 6.902 14 C -0.438 4.438 15 C -0.119 4.119 16 C -0.140 4.140 17 C -0.070 4.070 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.146 4.146 22 C -0.154 4.154 23 H 0.267 0.733 24 H 0.037 0.963 25 H 0.005 0.995 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.151 0.849 29 H 0.066 0.934 30 H 0.166 0.834 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.051 -9.690 1.890 28.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.161 1.161 7 C -0.577 4.577 8 H 0.049 0.951 9 C -0.047 4.047 10 C -0.123 4.123 11 C -0.578 4.578 12 S 1.489 4.511 13 O -0.897 6.897 14 C -0.574 4.574 15 C -0.137 4.137 16 C -0.160 4.160 17 C -0.070 4.070 18 C -0.133 4.133 19 C -0.141 4.141 20 C -0.146 4.146 21 C -0.165 4.165 22 C -0.172 4.172 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.101 0.899 28 H 0.169 0.831 29 H 0.085 0.915 30 H 0.183 0.817 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.130 0.870 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 26.344 -10.419 1.883 28.392 hybrid contribution -0.092 2.017 -2.347 3.097 sum 26.251 -8.402 -0.465 27.567 Atomic orbital electron populations 1.70080 1.08378 1.28234 1.52571 1.26080 0.95679 1.03715 0.94037 0.85624 0.79877 0.78020 0.78915 1.20041 1.20530 1.16132 1.21569 0.92370 0.93191 1.50558 0.95095 1.19551 0.93648 0.94804 0.96708 1.20980 0.91880 0.98193 1.01274 1.27709 1.02301 1.19552 1.08260 1.69794 0.85422 0.85846 1.09999 1.92967 1.77627 1.66263 1.52876 1.27115 1.18557 1.01917 1.09844 1.23029 0.95747 0.94974 0.99982 1.21991 1.01666 0.99968 0.92395 1.19407 0.93198 0.97694 0.96687 1.21632 0.97201 0.98705 0.95753 1.21486 0.99214 0.97037 0.96320 1.21503 0.92292 1.00210 1.00585 1.21310 0.98764 0.99787 0.96600 1.22122 0.99663 0.98151 0.97273 0.92440 0.94434 0.97646 0.95387 0.89918 0.83119 0.91477 0.81680 0.89830 0.81572 0.83270 0.83145 0.82935 0.84201 0.87022 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.00 0.09 5.47 84.66 0.46 0.55 16 3 Si 0.95 44.74 27.47 68.60 1.88 46.62 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 7 C -0.54 -31.98 9.66 25.60 0.25 -31.73 16 8 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.08 -3.31 5.16 30.60 0.16 -3.15 16 11 C -0.44 -12.29 5.92 71.98 0.43 -11.86 16 12 S 1.29 29.15 12.95 -56.49 -0.73 28.42 16 13 O -0.90 -32.89 15.61 -148.98 -2.33 -35.22 16 14 C -0.44 -7.73 5.37 71.23 0.38 -7.35 16 15 C -0.12 -1.89 9.47 24.53 0.23 -1.66 16 16 C -0.14 -2.59 9.77 23.66 0.23 -2.36 16 17 C -0.07 -1.66 5.09 -20.12 -0.10 -1.76 16 18 C -0.12 -2.21 9.79 22.52 0.22 -1.98 16 19 C -0.12 -2.26 10.03 22.23 0.22 -2.04 16 20 C -0.13 -2.81 10.04 22.32 0.22 -2.59 16 21 C -0.15 -4.10 10.03 22.23 0.22 -3.88 16 22 C -0.15 -4.54 7.29 22.52 0.16 -4.38 16 23 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 24 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 25 H 0.01 0.25 7.57 -2.39 -0.02 0.23 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 28 H 0.15 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.94 4.64 -2.39 -0.01 1.93 16 32 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.11 3.17 8.06 -2.91 -0.02 3.14 16 38 H 0.12 4.16 3.74 -2.91 -0.01 4.14 16 Total: -1.00 -83.83 326.38 3.31 -80.52 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.98 Total: 14.79 kcal Atomic # 6 Polarization: -77.69 SS G_CDS: 3.21 Total: -74.48 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.30 Total: -60.66 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -2.33 Total: -35.22 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Atomic # 16 Polarization: 29.15 SS G_CDS: -0.73 Total: 28.42 kcal Total: -83.83 3.31 -80.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255515519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.645 kcal (2) G-P(sol) polarization free energy of solvation -83.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds