Wall clock time and date at job start Mon Mar 30 2020 23:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86806 * 120.00220 * 2 1 4 4 H 1.48500 * 109.47084 * 270.00062 * 3 2 1 5 5 H 1.48498 * 109.46814 * 30.00033 * 3 2 1 6 6 H 1.48502 * 109.47074 * 149.99949 * 3 2 1 7 7 C 1.38650 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00300 * 0.02562 * 7 2 1 9 9 O 1.34835 * 120.00303 * 180.02562 * 7 2 1 10 10 C 1.35752 * 117.00663 * 185.05902 * 9 7 2 11 11 C 1.38883 * 120.05992 * 354.46305 * 10 9 7 12 12 C 1.38106 * 119.92456 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06882 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93031 * 179.97438 * 13 12 11 15 15 S 1.81401 * 109.47266 * 89.99989 * 14 13 12 16 16 C 1.81399 * 103.00045 * 180.02562 * 15 14 13 17 17 C 1.54894 * 110.48589 * 68.24359 * 16 15 14 18 18 C 1.55234 * 102.58522 * 156.67580 * 17 16 15 19 19 C 1.54265 * 104.23362 * 322.08489 * 18 17 16 20 20 C 1.53867 * 106.60175 * 23.60968 * 19 18 17 21 21 C 1.38302 * 120.13646 * 0.25249 * 13 12 11 22 22 C 1.38097 * 120.06928 * 359.44565 * 21 13 12 23 23 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.04036 * 0.02562 * 11 10 9 25 25 H 1.07998 * 119.96643 * 180.02562 * 12 11 10 26 26 H 1.09005 * 109.47017 * 330.00107 * 14 13 12 27 27 H 1.09001 * 109.47200 * 210.00315 * 14 13 12 28 28 H 1.09001 * 110.43359 * 305.70149 * 16 15 14 29 29 H 1.08999 * 110.75362 * 275.06224 * 17 16 15 30 30 H 1.08997 * 110.75423 * 38.43885 * 17 16 15 31 31 H 1.09001 * 110.46993 * 203.38839 * 18 17 16 32 32 H 1.09002 * 110.58319 * 80.82726 * 18 17 16 33 33 H 1.09001 * 110.03130 * 264.32376 * 19 18 17 34 34 H 1.09000 * 110.07425 * 142.92080 * 19 18 17 35 35 H 1.09003 * 110.03677 * 240.72198 * 20 19 18 36 36 H 1.09001 * 110.03299 * 119.28562 * 20 19 18 37 37 H 1.07999 * 119.96209 * 179.70909 * 21 13 12 38 38 H 1.08001 * 120.03749 * 180.27148 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0087 -1.2008 0.0005 8 1 1.4687 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0011 10 6 3.9735 -2.4057 -0.1051 11 6 3.2233 -3.5745 -0.0922 12 6 3.8533 -4.7987 -0.1998 13 6 5.2297 -4.8616 -0.3198 14 6 5.9140 -6.1991 -0.4365 15 16 6.0435 -6.6616 -2.1858 16 6 6.8786 -8.2707 -2.1217 17 6 5.9504 -9.3384 -1.4912 18 6 6.5272 -10.6642 -2.0562 19 6 6.9268 -10.3169 -3.5052 20 6 7.1501 -8.7951 -3.5469 21 6 5.9799 -3.6997 -0.3272 22 6 5.3553 -2.4722 -0.2262 23 1 -0.4850 0.8401 0.0004 24 1 2.1486 -3.5260 0.0020 25 1 3.2706 -5.7080 -0.1902 26 1 5.3332 -6.9521 0.0963 27 1 6.9119 -6.1359 -0.0025 28 1 7.8093 -8.1943 -1.5595 29 1 6.0195 -9.3166 -0.4036 30 1 4.9200 -9.1954 -1.8168 31 1 5.7670 -11.4453 -2.0469 32 1 7.4008 -10.9767 -1.4841 33 1 6.1261 -10.5957 -4.1903 34 1 7.8461 -10.8368 -3.7746 35 1 6.4578 -8.3353 -4.2522 36 1 8.1782 -8.5764 -3.8357 37 1 7.0549 -3.7523 -0.4164 38 1 5.9412 -1.5650 -0.2365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264751153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:16 Heat of formation + Delta-G solvation = -24.054003 kcal Electronic energy + Delta-G solvation = -18219.548534 eV Core-core repulsion = 15345.921341 eV Total energy + Delta-G solvation = -2873.627193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.22756 -37.99652 -36.89881 -32.54255 -31.38381 -30.28763 -29.07615 -28.95587 -26.47111 -24.72267 -22.13364 -21.12231 -20.81554 -20.23760 -17.92904 -17.32793 -16.75850 -16.01445 -15.01004 -15.00547 -14.79579 -14.17993 -13.99741 -13.80056 -13.67328 -13.61029 -13.08048 -12.69603 -12.32371 -12.20947 -12.01853 -11.76574 -11.51812 -11.40311 -11.26175 -11.10014 -10.91249 -10.76480 -10.72546 -10.55429 -10.18506 -9.73107 -9.42549 -8.88510 -8.30883 -7.53774 -7.33010 -6.45357 -4.11523 1.47767 2.10599 2.35755 2.82109 3.20580 3.24521 3.38479 4.20971 4.24362 4.33968 4.49088 4.64006 4.80476 5.07016 5.08223 5.09694 5.14000 5.16890 5.19177 5.30346 5.37640 5.54423 5.59788 5.63856 5.68306 5.72356 5.77201 5.89014 5.98903 6.05399 6.09656 6.27911 6.51422 6.74480 6.98072 7.17392 7.25175 7.55654 7.76200 7.99514 8.89517 9.50944 10.62017 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043711 B = 0.003036 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.414456 B = 9219.920747 C = 9429.784969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.108 0.892 9 O -0.214 6.214 10 C 0.166 3.834 11 C -0.222 4.222 12 C -0.051 4.051 13 C -0.171 4.171 14 C -0.018 4.018 15 S -0.258 6.258 16 C -0.068 4.068 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.101 4.101 21 C -0.056 4.056 22 C -0.193 4.193 23 H 0.280 0.720 24 H 0.135 0.865 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.525 -17.448 -3.002 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.112 3.888 11 C -0.241 4.241 12 C -0.071 4.071 13 C -0.174 4.174 14 C -0.165 4.165 15 S -0.025 6.025 16 C -0.197 4.197 17 C -0.158 4.158 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.140 4.140 21 C -0.076 4.076 22 C -0.213 4.213 23 H 0.090 0.910 24 H 0.152 0.848 25 H 0.129 0.871 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.078 -16.515 -3.895 21.423 hybrid contribution 0.523 0.031 1.061 1.183 sum 13.601 -16.484 -2.834 21.558 Atomic orbital electron populations 1.69643 1.05601 1.28601 1.47597 1.24479 0.95037 0.98892 0.95550 0.86177 0.80333 0.81344 0.79043 1.19799 1.20725 1.18317 1.20795 0.76819 0.96715 1.52234 0.87520 1.83572 1.22712 1.25818 1.79712 1.19159 0.91724 0.85486 0.92402 1.21257 1.01191 0.91703 1.09960 1.20645 0.93142 0.96932 0.96416 1.18673 0.93660 0.92190 1.12833 1.22040 1.02678 0.98147 0.93620 1.87333 1.78221 1.23206 1.13760 1.24031 1.00356 0.95044 1.00277 1.22943 0.99538 0.93460 0.99882 1.22414 1.00564 0.97289 0.95906 1.22128 1.01406 0.95288 0.97164 1.21945 1.02135 0.95215 0.94691 1.20478 0.98451 0.91144 0.97512 1.20180 0.91950 0.97795 1.11326 0.90960 0.84759 0.87087 0.90262 0.90413 0.89670 0.91470 0.90030 0.91437 0.91692 0.91535 0.91731 0.90746 0.91172 0.86775 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.23 13.96 55.48 0.77 -24.45 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 21.57 28.62 -169.99 -4.86 16.70 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.39 -10.95 9.95 30.88 0.31 -10.64 16 8 H 0.11 3.05 5.44 -52.48 -0.29 2.77 16 9 O -0.21 -5.62 8.59 0.03 0.00 -5.62 16 10 C 0.17 3.82 6.65 -39.11 -0.26 3.56 16 11 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 12 C -0.05 -0.94 9.69 -39.60 -0.38 -1.32 16 13 C -0.17 -2.86 5.14 -104.58 -0.54 -3.40 16 14 C -0.02 -0.24 5.98 36.00 0.22 -0.02 16 15 S -0.26 -3.51 20.98 -107.50 -2.26 -5.76 16 16 C -0.07 -0.69 3.36 -25.07 -0.08 -0.77 16 17 C -0.12 -1.07 6.28 -24.55 -0.15 -1.22 16 18 C -0.12 -0.90 6.84 -24.89 -0.17 -1.07 16 19 C -0.12 -0.90 6.80 -25.62 -0.17 -1.07 16 20 C -0.10 -0.92 6.39 -25.61 -0.16 -1.08 16 21 C -0.06 -0.96 9.69 -39.61 -0.38 -1.34 16 22 C -0.19 -3.83 9.99 -39.40 -0.39 -4.22 16 23 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.13 3.03 5.64 -52.49 -0.30 2.74 16 25 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 26 H 0.08 0.97 8.08 -51.92 -0.42 0.55 16 27 H 0.08 0.93 8.08 -51.92 -0.42 0.51 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.76 7.80 -51.93 -0.40 0.35 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -28.88 327.47 -9.66 -38.54 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.61 Total: 1.71 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -2.64 Total: -26.06 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.77 Total: -24.45 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: 0.00 Total: -5.62 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.86 Total: 16.70 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.26 Total: -5.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.88 -9.66 -38.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264751153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.488 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds