Wall clock time and date at job start Mon Mar 30 2020 23:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86806 * 120.00220 * 2 1 4 4 H 1.48500 * 109.47084 * 270.00062 * 3 2 1 5 5 H 1.48498 * 109.46814 * 30.00033 * 3 2 1 6 6 H 1.48502 * 109.47074 * 149.99949 * 3 2 1 7 7 C 1.38650 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00300 * 0.02562 * 7 2 1 9 9 O 1.34835 * 120.00303 * 180.02562 * 7 2 1 10 10 C 1.35752 * 117.00663 * 185.05902 * 9 7 2 11 11 C 1.38883 * 120.05992 * 354.46305 * 10 9 7 12 12 C 1.38106 * 119.92456 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06882 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93031 * 179.97438 * 13 12 11 15 15 S 1.81401 * 109.47266 * 89.99989 * 14 13 12 16 16 C 1.81399 * 103.00045 * 180.02562 * 15 14 13 17 17 C 1.54894 * 110.48589 * 68.24359 * 16 15 14 18 18 C 1.55234 * 102.58522 * 156.67580 * 17 16 15 19 19 C 1.54265 * 104.23362 * 322.08489 * 18 17 16 20 20 C 1.53867 * 106.60175 * 23.60968 * 19 18 17 21 21 C 1.38302 * 120.13646 * 0.25249 * 13 12 11 22 22 C 1.38097 * 120.06928 * 359.44565 * 21 13 12 23 23 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.04036 * 0.02562 * 11 10 9 25 25 H 1.07998 * 119.96643 * 180.02562 * 12 11 10 26 26 H 1.09005 * 109.47017 * 330.00107 * 14 13 12 27 27 H 1.09001 * 109.47200 * 210.00315 * 14 13 12 28 28 H 1.09001 * 110.43359 * 305.70149 * 16 15 14 29 29 H 1.08999 * 110.75362 * 275.06224 * 17 16 15 30 30 H 1.08997 * 110.75423 * 38.43885 * 17 16 15 31 31 H 1.09001 * 110.46993 * 203.38839 * 18 17 16 32 32 H 1.09002 * 110.58319 * 80.82726 * 18 17 16 33 33 H 1.09001 * 110.03130 * 264.32376 * 19 18 17 34 34 H 1.09000 * 110.07425 * 142.92080 * 19 18 17 35 35 H 1.09003 * 110.03677 * 240.72198 * 20 19 18 36 36 H 1.09001 * 110.03299 * 119.28562 * 20 19 18 37 37 H 1.07999 * 119.96209 * 179.70909 * 21 13 12 38 38 H 1.08001 * 120.03749 * 180.27148 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0087 -1.2008 0.0005 8 1 1.4687 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0011 10 6 3.9735 -2.4057 -0.1051 11 6 3.2233 -3.5745 -0.0922 12 6 3.8533 -4.7987 -0.1998 13 6 5.2297 -4.8616 -0.3198 14 6 5.9140 -6.1991 -0.4365 15 16 6.0435 -6.6616 -2.1858 16 6 6.8786 -8.2707 -2.1217 17 6 5.9504 -9.3384 -1.4912 18 6 6.5272 -10.6642 -2.0562 19 6 6.9268 -10.3169 -3.5052 20 6 7.1501 -8.7951 -3.5469 21 6 5.9799 -3.6997 -0.3272 22 6 5.3553 -2.4722 -0.2262 23 1 -0.4850 0.8401 0.0004 24 1 2.1486 -3.5260 0.0020 25 1 3.2706 -5.7080 -0.1902 26 1 5.3332 -6.9521 0.0963 27 1 6.9119 -6.1359 -0.0025 28 1 7.8093 -8.1943 -1.5595 29 1 6.0195 -9.3166 -0.4036 30 1 4.9200 -9.1954 -1.8168 31 1 5.7670 -11.4453 -2.0469 32 1 7.4008 -10.9767 -1.4841 33 1 6.1261 -10.5957 -4.1903 34 1 7.8461 -10.8368 -3.7746 35 1 6.4578 -8.3353 -4.2522 36 1 8.1782 -8.5764 -3.8357 37 1 7.0549 -3.7523 -0.4164 38 1 5.9412 -1.5650 -0.2365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264751153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:15 Heat of formation + Delta-G solvation = -37.789368 kcal Electronic energy + Delta-G solvation = -18220.144144 eV Core-core repulsion = 15345.921341 eV Total energy + Delta-G solvation = -2874.222803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92512 -38.67180 -38.57262 -34.54524 -32.87677 -31.85975 -29.79173 -29.61927 -28.10734 -26.45823 -23.74364 -22.32922 -21.68496 -21.10959 -19.84467 -19.13683 -17.64218 -16.85697 -16.68897 -16.29966 -15.97245 -15.80366 -15.60365 -15.24290 -14.79943 -14.50584 -14.36885 -14.32169 -14.10900 -13.53128 -13.27354 -12.88633 -12.75257 -12.47327 -12.46578 -12.12111 -12.02530 -11.98903 -11.90973 -11.74952 -11.32725 -11.30898 -10.91549 -10.68020 -9.85582 -8.99232 -8.60020 -8.51796 -6.24546 0.21532 0.53274 1.11737 1.31028 1.35981 1.51628 1.75841 2.27099 2.77422 3.02528 3.15564 3.55371 3.67266 3.84472 3.92151 4.02459 4.11712 4.30016 4.42940 4.48953 4.51665 4.53313 4.58246 4.60872 4.73242 4.78294 4.89302 4.92885 5.06772 5.19845 5.20049 5.24260 5.29658 5.32977 5.46574 5.52401 5.67687 5.76255 5.86852 6.18278 6.82219 7.55125 8.59783 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043711 B = 0.003036 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.414456 B = 9219.920747 C = 9429.784969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.401 4.401 8 H 0.081 0.919 9 O -0.242 6.242 10 C 0.126 3.874 11 C -0.237 4.237 12 C -0.055 4.055 13 C -0.147 4.147 14 C -0.012 4.012 15 S -0.305 6.305 16 C -0.054 4.054 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.103 4.103 21 C -0.051 4.051 22 C -0.191 4.191 23 H 0.285 0.715 24 H 0.110 0.890 25 H 0.133 0.867 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.906 -19.547 -3.082 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.099 0.901 9 O -0.149 6.149 10 C 0.076 3.924 11 C -0.257 4.257 12 C -0.075 4.075 13 C -0.149 4.149 14 C -0.159 4.159 15 S -0.073 6.073 16 C -0.182 4.182 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.070 4.070 22 C -0.211 4.211 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.151 0.849 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.172 0.828 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.481 -18.648 -3.972 25.202 hybrid contribution -0.297 0.267 1.010 1.087 sum 16.185 -18.380 -2.962 24.669 Atomic orbital electron populations 1.69727 1.06948 1.29687 1.49927 1.25296 0.95887 1.02218 0.95399 0.85210 0.78851 0.77311 0.79305 1.19112 1.19087 1.18562 1.20720 0.78066 0.96176 1.52777 0.90144 1.83517 1.21281 1.27391 1.82713 1.19697 0.93228 0.85068 0.94417 1.21261 1.00277 0.93066 1.11061 1.20895 0.94372 0.96321 0.95920 1.19125 0.92997 0.94165 1.08577 1.22032 1.03902 0.96188 0.93818 1.87530 1.79327 1.26728 1.13720 1.24118 1.00439 0.92409 1.01270 1.22936 0.98633 0.93993 1.00355 1.22413 1.01175 0.96486 0.95679 1.22130 1.02205 0.94015 0.97391 1.21980 1.02221 0.96267 0.93694 1.20933 1.00424 0.89966 0.95707 1.20509 0.90560 0.99746 1.10241 0.90495 0.87226 0.84899 0.88669 0.87871 0.88373 0.90672 0.91402 0.90720 0.90475 0.91598 0.90228 0.92366 0.90273 0.82848 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.96 21.61 0.30 -55.25 16 2 C 0.01 0.62 5.49 84.83 0.47 1.08 16 3 Si 0.97 45.69 28.62 68.60 1.96 47.66 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.40 -23.91 9.95 67.92 0.68 -23.23 16 8 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 9 O -0.24 -13.27 8.59 -22.82 -0.20 -13.46 16 10 C 0.13 5.96 6.65 22.58 0.15 6.11 16 11 C -0.24 -10.63 9.17 22.39 0.21 -10.43 16 12 C -0.06 -1.97 9.69 22.26 0.22 -1.75 16 13 C -0.15 -4.49 5.14 -19.83 -0.10 -4.59 16 14 C -0.01 -0.28 5.98 71.23 0.43 0.14 16 15 S -0.30 -7.47 20.98 -56.49 -1.19 -8.66 16 16 C -0.05 -0.91 3.36 31.67 0.11 -0.80 16 17 C -0.12 -1.78 6.28 32.01 0.20 -1.57 16 18 C -0.12 -1.33 6.84 31.79 0.22 -1.11 16 19 C -0.12 -1.39 6.80 31.32 0.21 -1.18 16 20 C -0.10 -1.58 6.39 31.32 0.20 -1.38 16 21 C -0.05 -1.58 9.69 22.25 0.22 -1.37 16 22 C -0.19 -7.37 9.99 22.39 0.22 -7.15 16 23 H 0.29 15.72 8.31 -92.71 -0.77 14.95 16 24 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 25 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 26 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 27 H 0.10 1.91 8.08 -2.39 -0.02 1.89 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.21 8.06 -2.39 -0.02 1.19 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.09 7.80 -2.39 -0.02 1.07 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -66.04 327.47 5.33 -60.71 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.04 Total: 16.23 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 3.41 Total: -47.23 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.30 Total: -55.25 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.20 Total: -13.46 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.96 Total: 47.66 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.19 Total: -8.66 kcal Total: -66.04 5.33 -60.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264751153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.921 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds