Wall clock time and date at job start Mon Mar 30 2020 23:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48503 * 109.47212 * 270.00045 * 3 2 1 5 5 H 1.48493 * 109.47347 * 30.00188 * 3 2 1 6 6 H 1.48499 * 109.47247 * 150.00288 * 3 2 1 7 7 C 1.38948 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00382 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.34766 * 120.00458 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99986 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00076 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47080 * 179.97438 * 12 10 9 14 14 O 1.42904 * 109.47254 * 179.97438 * 13 12 10 15 15 C 1.35710 * 117.00085 * 180.02562 * 14 13 12 16 16 C 1.39004 * 119.90917 * 180.02562 * 15 14 13 17 17 C 1.37696 * 120.08537 * 180.02562 * 16 15 14 18 18 C 1.39738 * 119.91323 * 359.97438 * 17 16 15 19 19 C 1.47600 * 120.08720 * 180.02562 * 18 17 16 20 20 N 1.34784 * 119.99996 * 180.02562 * 19 18 17 21 21 O 1.21588 * 120.00146 * 359.97438 * 19 18 17 22 22 C 1.39735 * 119.82583 * 0.27592 * 18 17 16 23 23 C 1.37708 * 119.90544 * 359.46580 * 22 18 17 24 24 H 0.97009 * 119.99795 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99545 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47301 * 60.00289 * 12 10 9 27 27 H 1.09004 * 109.46786 * 299.99757 * 12 10 9 28 28 H 1.09010 * 109.47296 * 60.00200 * 13 12 10 29 29 H 1.08996 * 109.47296 * 299.99859 * 13 12 10 30 30 H 1.07995 * 119.95399 * 0.02562 * 16 15 14 31 31 H 1.08001 * 120.04377 * 179.97438 * 17 16 15 32 32 H 0.97000 * 119.99339 * 359.97438 * 20 19 18 33 33 H 0.96995 * 120.00015 * 179.72403 * 20 19 18 34 34 H 1.07997 * 120.04683 * 179.73081 * 22 18 17 35 35 H 1.07996 * 119.95407 * 180.24853 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2100 -3.5579 -0.0001 12 6 1.2435 -4.8629 -0.0011 13 6 2.2377 -6.0259 -0.0016 14 8 1.5232 -7.2635 -0.0016 15 6 2.2623 -8.4016 -0.0015 16 6 1.6292 -9.6392 -0.0020 17 6 2.3756 -10.7963 -0.0013 18 6 3.7712 -10.7254 -0.0007 19 6 4.5750 -11.9633 -0.0006 20 7 5.9210 -11.8928 0.0005 21 8 4.0230 -13.0466 -0.0006 22 6 4.4038 -9.4794 0.0051 23 6 3.6502 -8.3268 -0.0010 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3907 -0.0005 26 1 0.6173 -4.9205 -0.8913 27 1 0.6165 -4.9208 0.8887 28 1 2.8644 -5.9686 0.8885 29 1 2.8643 -5.9678 -0.8916 30 1 0.5506 -9.6931 -0.0029 31 1 1.8831 -11.7574 -0.0013 32 1 6.3613 -11.0285 0.0008 33 1 6.4492 -12.7063 0.0046 34 1 5.4821 -9.4204 0.0099 35 1 4.1383 -7.3634 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267135426.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:53 Heat of formation + Delta-G solvation = -98.588356 kcal Electronic energy + Delta-G solvation = -19905.774211 eV Core-core repulsion = 16482.621752 eV Total energy + Delta-G solvation = -3423.152459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56103 -39.47240 -38.32388 -37.08730 -34.16205 -34.06429 -31.87334 -31.31629 -31.04021 -29.79307 -25.71101 -24.11963 -23.62980 -22.14018 -20.67158 -19.29850 -18.69934 -17.98793 -17.81771 -17.06981 -16.18638 -15.96721 -15.43031 -15.23011 -14.93714 -14.61567 -14.27649 -14.14270 -14.01121 -13.68090 -13.34268 -12.75903 -12.68454 -12.44994 -11.72658 -11.71159 -11.52223 -11.14167 -10.86771 -10.58967 -10.47044 -10.31634 -10.31241 -10.00089 -9.63515 -9.29723 -8.60295 -8.39791 -8.10091 -6.52458 -3.94234 0.71750 1.12898 2.67079 3.02761 3.10614 3.20908 3.26275 3.27536 3.66999 3.75205 4.10678 4.46656 4.61049 4.70689 4.94047 4.98749 5.10387 5.11599 5.24096 5.30620 5.43442 5.61213 5.72117 5.90538 6.03701 6.09579 6.10322 6.12422 6.26391 6.45187 6.53400 7.04392 7.29543 7.45056 7.92623 7.99516 8.45806 9.04704 9.40068 9.89344 10.64701 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.050481 B = 0.002559 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.527068 B =10939.360617 C =11473.439905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.554 5.554 10 C 0.441 3.559 11 O -0.601 6.601 12 C -0.130 4.130 13 C 0.078 3.922 14 O -0.313 6.313 15 C 0.172 3.828 16 C -0.166 4.166 17 C -0.019 4.019 18 C -0.193 4.193 19 C 0.570 3.430 20 N -0.854 5.854 21 O -0.548 6.548 22 C -0.041 4.041 23 C -0.218 4.218 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.401 0.599 33 H 0.403 0.597 34 H 0.127 0.873 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -17.435 0.019 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.122 0.878 9 N -0.189 5.189 10 C 0.227 3.773 11 O -0.488 6.488 12 C -0.170 4.170 13 C 0.003 3.997 14 O -0.225 6.225 15 C 0.124 3.876 16 C -0.185 4.185 17 C -0.038 4.038 18 C -0.197 4.197 19 C 0.358 3.642 20 N -0.418 5.418 21 O -0.427 6.427 22 C -0.060 4.060 23 C -0.237 4.237 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.230 0.770 33 H 0.234 0.766 34 H 0.145 0.855 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.538 -17.801 0.023 18.642 hybrid contribution 0.462 1.180 -0.006 1.267 sum 5.999 -16.620 0.017 17.670 Atomic orbital electron populations 1.69613 1.06002 1.28448 1.49675 1.25312 0.95666 0.99904 0.96914 0.85825 0.79237 0.80561 0.78490 1.20278 1.20808 1.19337 1.19731 0.93443 0.82117 1.48123 0.87759 1.41851 1.09411 1.04553 1.63051 1.19508 0.88034 0.84626 0.85154 1.90526 1.13843 1.87395 1.57030 1.21346 0.98800 0.92359 1.04531 1.22597 0.94554 0.79499 1.03050 1.85995 1.36493 1.13186 1.86843 1.19357 0.90056 0.86881 0.91273 1.20450 1.01012 0.89139 1.07879 1.21023 0.92066 0.98397 0.92281 1.19691 0.94429 0.92553 1.13004 1.18204 0.82294 0.88879 0.74866 1.43765 1.07117 1.12551 1.78380 1.90806 1.71670 1.29797 1.50436 1.21041 0.99473 0.91057 0.94439 1.21377 0.92999 1.00215 1.09108 0.91648 0.77147 0.89248 0.89242 0.90859 0.90849 0.84334 0.84125 0.76961 0.76614 0.85474 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.75 13.05 55.50 0.72 -23.03 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.54 5.29 -10.96 -0.06 -13.60 16 10 C 0.44 9.86 7.78 -10.99 -0.09 9.77 16 11 O -0.60 -15.31 15.56 5.54 0.09 -15.23 16 12 C -0.13 -2.15 6.07 -27.88 -0.17 -2.32 16 13 C 0.08 1.17 4.02 37.16 0.15 1.32 16 14 O -0.31 -4.40 10.12 -18.83 -0.19 -4.59 16 15 C 0.17 2.17 6.70 -39.02 -0.26 1.91 16 16 C -0.17 -1.87 9.97 -39.50 -0.39 -2.26 16 17 C -0.02 -0.21 9.58 -39.22 -0.38 -0.58 16 18 C -0.19 -2.07 5.88 -104.96 -0.62 -2.69 16 19 C 0.57 6.20 8.04 -12.44 -0.10 6.10 16 20 N -0.85 -5.65 8.82 30.47 0.27 -5.38 16 21 O -0.55 -7.96 17.18 5.29 0.09 -7.87 16 22 C -0.04 -0.39 9.53 -39.22 -0.37 -0.77 16 23 C -0.22 -2.49 9.01 -39.50 -0.36 -2.84 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.07 1.11 7.61 -51.92 -0.39 0.72 16 29 H 0.07 1.12 7.61 -51.93 -0.40 0.72 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 1.44 7.64 -52.49 -0.40 1.04 16 32 H 0.40 1.64 6.85 -40.82 -0.28 1.36 16 33 H 0.40 2.10 8.93 -40.82 -0.36 1.74 16 34 H 0.13 0.78 6.39 -52.49 -0.34 0.44 16 35 H 0.14 1.58 6.28 -52.49 -0.33 1.25 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -32.68 311.67 -5.83 -38.51 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -3.60 Total: 11.31 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.82 Total: -0.18 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.94 Total: -42.00 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.01 Total: -27.69 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.68 -5.83 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267135426.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.081 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds