Wall clock time and date at job start Mon Mar 30 2020 23:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48503 * 109.47212 * 270.00045 * 3 2 1 5 5 H 1.48493 * 109.47347 * 30.00188 * 3 2 1 6 6 H 1.48499 * 109.47247 * 150.00288 * 3 2 1 7 7 C 1.38948 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00382 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.34766 * 120.00458 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99986 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00076 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47080 * 179.97438 * 12 10 9 14 14 O 1.42904 * 109.47254 * 179.97438 * 13 12 10 15 15 C 1.35710 * 117.00085 * 180.02562 * 14 13 12 16 16 C 1.39004 * 119.90917 * 180.02562 * 15 14 13 17 17 C 1.37696 * 120.08537 * 180.02562 * 16 15 14 18 18 C 1.39738 * 119.91323 * 359.97438 * 17 16 15 19 19 C 1.47600 * 120.08720 * 180.02562 * 18 17 16 20 20 N 1.34784 * 119.99996 * 180.02562 * 19 18 17 21 21 O 1.21588 * 120.00146 * 359.97438 * 19 18 17 22 22 C 1.39735 * 119.82583 * 0.27592 * 18 17 16 23 23 C 1.37708 * 119.90544 * 359.46580 * 22 18 17 24 24 H 0.97009 * 119.99795 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99545 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47301 * 60.00289 * 12 10 9 27 27 H 1.09004 * 109.46786 * 299.99757 * 12 10 9 28 28 H 1.09010 * 109.47296 * 60.00200 * 13 12 10 29 29 H 1.08996 * 109.47296 * 299.99859 * 13 12 10 30 30 H 1.07995 * 119.95399 * 0.02562 * 16 15 14 31 31 H 1.08001 * 120.04377 * 179.97438 * 17 16 15 32 32 H 0.97000 * 119.99339 * 359.97438 * 20 19 18 33 33 H 0.96995 * 120.00015 * 179.72403 * 20 19 18 34 34 H 1.07997 * 120.04683 * 179.73081 * 22 18 17 35 35 H 1.07996 * 119.95407 * 180.24853 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2100 -3.5579 -0.0001 12 6 1.2435 -4.8629 -0.0011 13 6 2.2377 -6.0259 -0.0016 14 8 1.5232 -7.2635 -0.0016 15 6 2.2623 -8.4016 -0.0015 16 6 1.6292 -9.6392 -0.0020 17 6 2.3756 -10.7963 -0.0013 18 6 3.7712 -10.7254 -0.0007 19 6 4.5750 -11.9633 -0.0006 20 7 5.9210 -11.8928 0.0005 21 8 4.0230 -13.0466 -0.0006 22 6 4.4038 -9.4794 0.0051 23 6 3.6502 -8.3268 -0.0010 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3907 -0.0005 26 1 0.6173 -4.9205 -0.8913 27 1 0.6165 -4.9208 0.8887 28 1 2.8644 -5.9686 0.8885 29 1 2.8643 -5.9678 -0.8916 30 1 0.5506 -9.6931 -0.0029 31 1 1.8831 -11.7574 -0.0013 32 1 6.3613 -11.0285 0.0008 33 1 6.4492 -12.7063 0.0046 34 1 5.4821 -9.4204 0.0099 35 1 4.1383 -7.3634 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267135426.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:52 Heat of formation + Delta-G solvation = -123.398180 kcal Electronic energy + Delta-G solvation = -19906.850046 eV Core-core repulsion = 16482.621752 eV Total energy + Delta-G solvation = -3424.228294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48200 -40.52202 -39.98519 -38.07548 -36.07179 -34.85464 -33.46515 -32.85839 -31.99191 -30.77580 -27.41913 -25.43047 -24.57349 -23.18995 -21.53672 -20.98762 -19.94620 -19.55474 -18.78908 -17.87694 -17.52059 -17.37148 -16.55007 -16.47733 -16.05750 -15.85967 -15.79187 -15.60231 -15.13424 -14.57258 -14.37337 -14.26517 -13.95482 -13.55467 -13.51226 -13.01637 -12.78363 -12.72050 -12.43097 -12.11802 -11.82807 -11.75658 -11.54410 -11.21837 -10.71824 -10.47700 -10.13231 -10.06375 -9.32435 -8.49517 -5.99068 -0.15670 0.29406 1.37495 1.42709 1.54979 1.80950 1.90732 1.97950 2.32140 2.57556 2.81882 3.18046 3.33911 3.65285 3.80344 3.89274 3.94275 4.00539 4.15397 4.29093 4.38876 4.50499 4.65316 4.79720 4.80964 4.93690 5.09138 5.22432 5.30299 5.39525 5.61481 5.88667 5.95165 6.28068 6.41283 6.52763 7.07218 7.29120 7.49616 8.02521 8.67578 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.050481 B = 0.002559 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.527068 B =10939.360617 C =11473.439905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.083 0.917 9 N -0.567 5.567 10 C 0.443 3.557 11 O -0.634 6.634 12 C -0.119 4.119 13 C 0.088 3.912 14 O -0.318 6.318 15 C 0.148 3.852 16 C -0.166 4.166 17 C -0.026 4.026 18 C -0.198 4.198 19 C 0.568 3.432 20 N -0.832 5.832 21 O -0.591 6.591 22 C -0.031 4.031 23 C -0.226 4.226 24 H 0.279 0.721 25 H 0.399 0.601 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.416 0.584 33 H 0.413 0.587 34 H 0.164 0.836 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -17.741 0.008 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.101 0.899 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.522 6.522 12 C -0.159 4.159 13 C 0.013 3.987 14 O -0.231 6.231 15 C 0.102 3.898 16 C -0.185 4.185 17 C -0.045 4.045 18 C -0.201 4.201 19 C 0.355 3.645 20 N -0.396 5.396 21 O -0.473 6.473 22 C -0.050 4.050 23 C -0.245 4.245 24 H 0.088 0.912 25 H 0.233 0.767 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.248 0.752 33 H 0.245 0.755 34 H 0.181 0.819 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.265 -18.110 0.010 19.163 hybrid contribution 0.307 1.153 -0.003 1.193 sum 6.572 -16.957 0.007 18.186 Atomic orbital electron populations 1.69674 1.06920 1.29489 1.49752 1.26087 0.96542 1.02585 0.96020 0.84907 0.77932 0.76702 0.78697 1.19588 1.19657 1.19550 1.19714 0.92869 0.83831 1.50204 0.89881 1.41929 1.09556 1.04713 1.64039 1.20442 0.87902 0.85908 0.82708 1.90499 1.15685 1.88207 1.57840 1.21221 0.98714 0.89509 1.06431 1.22341 0.93885 0.79788 1.02714 1.85945 1.36521 1.13085 1.87520 1.19603 0.90763 0.86634 0.92835 1.20573 1.01736 0.88675 1.07469 1.21159 0.92560 0.98461 0.92285 1.19851 0.94510 0.93080 1.12671 1.18263 0.83413 0.88163 0.74635 1.43589 1.05786 1.13985 1.76227 1.90791 1.72712 1.31078 1.52762 1.21339 1.01187 0.89754 0.92675 1.21496 0.92716 1.00927 1.09317 0.91170 0.76722 0.87263 0.87259 0.91287 0.91273 0.83193 0.83797 0.75204 0.75484 0.81908 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.33 13.05 21.66 0.28 -48.04 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 41.49 29.55 68.60 2.03 43.52 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.34 -18.45 9.68 84.04 0.81 -17.64 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -27.94 5.29 -306.98 -1.62 -29.56 16 10 C 0.44 19.78 7.78 87.66 0.68 20.47 16 11 O -0.63 -32.63 15.56 -3.08 -0.05 -32.67 16 12 C -0.12 -3.79 6.07 29.85 0.18 -3.61 16 13 C 0.09 2.57 4.02 71.98 0.29 2.86 16 14 O -0.32 -8.56 10.12 -90.31 -0.91 -9.48 16 15 C 0.15 3.59 6.70 22.63 0.15 3.74 16 16 C -0.17 -3.57 9.97 22.33 0.22 -3.34 16 17 C -0.03 -0.54 9.58 22.50 0.22 -0.33 16 18 C -0.20 -3.91 5.88 -20.08 -0.12 -4.03 16 19 C 0.57 11.44 8.04 86.71 0.70 12.14 16 20 N -0.83 -8.90 8.82 -175.75 -1.55 -10.45 16 21 O -0.59 -16.78 17.18 -3.99 -0.07 -16.85 16 22 C -0.03 -0.52 9.53 22.51 0.21 -0.30 16 23 C -0.23 -4.82 9.01 22.33 0.20 -4.61 16 24 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 25 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 26 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 27 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.07 2.06 7.61 -2.38 -0.02 2.04 16 29 H 0.07 2.06 7.61 -2.39 -0.02 2.04 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.14 2.89 7.64 -2.91 -0.02 2.87 16 32 H 0.42 2.01 6.85 -92.71 -0.64 1.38 16 33 H 0.41 3.32 8.93 -92.71 -0.83 2.49 16 34 H 0.16 1.41 6.39 -2.91 -0.02 1.39 16 35 H 0.14 3.00 6.28 -2.91 -0.02 2.98 16 Total: -1.00 -70.57 311.67 1.10 -69.47 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -1.02 Total: 28.89 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.02 Total: 5.18 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.89 Total: -88.06 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -1.03 Total: -59.00 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -70.57 1.10 -69.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267135426.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.928 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds