Wall clock time and date at job start Mon Mar 30 2020 23:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48502 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47062 * 299.99847 * 3 2 1 6 6 H 1.48506 * 109.46890 * 59.99895 * 3 2 1 7 7 C 1.38953 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00219 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 O 1.42898 * 109.47319 * 180.02562 * 13 12 10 15 15 C 1.35912 * 117.00151 * 180.02562 * 14 13 12 16 16 C 1.38848 * 119.98243 * 359.71688 * 15 14 13 17 17 C 1.38240 * 120.23602 * 179.76665 * 16 15 14 18 18 C 1.38008 * 120.20875 * 0.51780 * 17 16 15 19 19 C 1.39566 * 119.96265 * 359.73773 * 18 17 16 20 20 C 1.47854 * 120.11424 * 179.97438 * 19 18 17 21 21 N 1.34778 * 120.00558 * 0.02910 * 20 19 18 22 22 O 1.21556 * 119.99899 * 180.02562 * 20 19 18 23 23 C 1.38454 * 119.98389 * 180.02562 * 15 14 13 24 24 H 0.97002 * 119.99781 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00141 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 27 27 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 28 28 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 29 29 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 30 30 H 1.08004 * 119.88169 * 0.02704 * 16 15 14 31 31 H 1.08010 * 119.89531 * 180.25887 * 17 16 15 32 32 H 1.08003 * 120.01654 * 179.76692 * 18 17 16 33 33 H 0.97000 * 119.99839 * 359.97438 * 21 20 19 34 34 H 0.96996 * 120.00042 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.10414 * 359.94968 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 6 2.2378 -6.0259 -0.0004 14 8 1.5233 -7.2635 -0.0015 15 6 2.2635 -8.4033 -0.0005 16 6 3.6501 -8.3303 -0.0043 17 6 4.4081 -9.4864 0.0016 18 6 3.7914 -10.7210 0.0005 19 6 2.3983 -10.8044 -0.0009 20 6 1.7341 -12.1254 -0.0026 21 7 2.4742 -13.2518 -0.0021 22 8 0.5206 -12.1955 -0.0043 23 6 1.6345 -9.6368 -0.0020 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3907 -0.0005 26 1 0.6173 -4.9205 -0.8914 27 1 0.6166 -4.9208 0.8885 28 1 2.8639 -5.9682 0.8901 29 1 2.8652 -5.9682 -0.8899 30 1 4.1381 -7.3669 -0.0077 31 1 5.4863 -9.4231 0.0028 32 1 4.3867 -11.6222 0.0014 33 1 3.4426 -13.1959 -0.0010 34 1 2.0384 -14.1184 -0.0036 35 1 0.5561 -9.6949 -0.0033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267575419.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:04 Heat of formation + Delta-G solvation = -96.609013 kcal Electronic energy + Delta-G solvation = -19950.369431 eV Core-core repulsion = 16527.302803 eV Total energy + Delta-G solvation = -3423.066628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56061 -39.42712 -38.29182 -37.12127 -34.14856 -34.05811 -31.85777 -31.33986 -31.04204 -29.58223 -25.70367 -24.55393 -22.98745 -22.56890 -20.58610 -19.24446 -18.81549 -17.94994 -17.42401 -16.78144 -16.20157 -16.10880 -15.64490 -15.36250 -14.99243 -14.60066 -14.29563 -14.07642 -14.00423 -13.89746 -13.25046 -12.66900 -12.51858 -12.17714 -11.72347 -11.71635 -11.56347 -11.13648 -10.89819 -10.54681 -10.39640 -10.35544 -10.29425 -10.05633 -9.61632 -9.24238 -8.56429 -8.37630 -8.06853 -6.49497 -3.91132 0.60011 1.21379 2.63328 2.93322 3.11386 3.22916 3.29135 3.36902 3.65523 3.78828 4.13452 4.47600 4.60282 4.73284 4.92476 5.02714 5.12113 5.14340 5.28844 5.33427 5.35791 5.64992 5.73278 5.97210 6.05122 6.14748 6.16158 6.17344 6.30823 6.39597 6.50164 6.97635 7.38477 7.48161 7.92569 7.96073 8.49227 9.07858 9.43570 9.92926 10.67806 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.052930 B = 0.002596 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.869268 B =10784.100121 C =11292.521831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.555 5.555 10 C 0.442 3.558 11 O -0.601 6.601 12 C -0.130 4.130 13 C 0.079 3.921 14 O -0.315 6.315 15 C 0.135 3.865 16 C -0.181 4.181 17 C -0.086 4.086 18 C -0.132 4.132 19 C -0.107 4.107 20 C 0.566 3.434 21 N -0.851 5.851 22 O -0.537 6.537 23 C -0.096 4.096 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.401 0.599 34 H 0.405 0.595 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 -21.587 0.001 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.190 5.190 10 C 0.228 3.772 11 O -0.488 6.488 12 C -0.170 4.170 13 C 0.005 3.995 14 O -0.229 6.229 15 C 0.089 3.911 16 C -0.199 4.199 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.110 4.110 20 C 0.352 3.648 21 N -0.415 5.415 22 O -0.414 6.414 23 C -0.115 4.115 24 H 0.083 0.917 25 H 0.229 0.771 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.231 0.769 34 H 0.236 0.764 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.674 -21.222 0.000 21.967 hybrid contribution 0.335 0.648 0.002 0.729 sum 6.008 -20.574 0.001 21.434 Atomic orbital electron populations 1.69623 1.05993 1.28307 1.49839 1.25314 0.95667 0.99893 0.96991 0.85773 0.79682 0.80922 0.77805 1.19164 1.20640 1.20647 1.19780 0.93462 0.82117 1.47935 0.87715 1.41861 1.09419 1.04554 1.63136 1.19527 0.88030 0.84645 0.85025 1.90524 1.13857 1.87416 1.56979 1.21340 0.98818 0.92330 1.04553 1.22544 0.94520 0.79642 1.02834 1.86038 1.36062 1.12887 1.87867 1.18883 0.89960 0.86800 0.95496 1.21687 0.92990 1.00617 1.04654 1.20895 1.00122 0.91432 0.97966 1.21095 0.92986 0.98106 1.02888 1.19529 0.93556 0.92567 1.05332 1.18246 0.86644 0.84579 0.75310 1.43729 1.11065 1.08518 1.78237 1.90834 1.13701 1.87559 1.49304 1.20473 1.01276 0.88381 1.01386 0.91723 0.77141 0.89235 0.89244 0.91033 0.91041 0.84217 0.85031 0.85709 0.76893 0.76436 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.84 5.29 -10.96 -0.06 -13.89 16 10 C 0.44 10.13 7.78 -10.99 -0.09 10.04 16 11 O -0.60 -15.62 15.56 5.54 0.09 -15.54 16 12 C -0.13 -2.25 6.07 -27.89 -0.17 -2.42 16 13 C 0.08 1.26 4.03 37.16 0.15 1.41 16 14 O -0.32 -4.79 10.13 -19.46 -0.20 -4.99 16 15 C 0.13 1.84 6.68 -39.28 -0.26 1.57 16 16 C -0.18 -2.13 9.03 -39.35 -0.36 -2.49 16 17 C -0.09 -0.79 10.03 -39.66 -0.40 -1.19 16 18 C -0.13 -1.10 9.54 -39.17 -0.37 -1.48 16 19 C -0.11 -1.16 5.87 -104.99 -0.62 -1.78 16 20 C 0.57 6.14 8.05 -12.32 -0.10 6.04 16 21 N -0.85 -5.08 8.82 30.53 0.27 -4.81 16 22 O -0.54 -8.02 17.18 5.32 0.09 -7.93 16 23 C -0.10 -1.25 9.53 -39.02 -0.37 -1.62 16 24 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 25 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 26 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.07 1.14 7.63 -51.93 -0.40 0.74 16 29 H 0.07 1.14 7.60 -51.93 -0.39 0.74 16 30 H 0.14 1.64 6.28 -52.48 -0.33 1.31 16 31 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.13 0.57 6.40 -52.48 -0.34 0.24 16 33 H 0.40 1.22 6.86 -40.82 -0.28 0.94 16 34 H 0.40 1.86 8.93 -40.82 -0.36 1.50 16 35 H 0.14 1.96 7.65 -52.49 -0.40 1.55 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -33.42 311.75 -5.83 -39.26 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -3.60 Total: 10.81 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.82 Total: 0.16 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.94 Total: -42.09 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.02 Total: -28.46 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.42 -5.83 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267575419.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.353 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds