Wall clock time and date at job start Mon Mar 30 2020 23:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48502 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47062 * 299.99847 * 3 2 1 6 6 H 1.48506 * 109.46890 * 59.99895 * 3 2 1 7 7 C 1.38953 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00219 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 O 1.42898 * 109.47319 * 180.02562 * 13 12 10 15 15 C 1.35912 * 117.00151 * 180.02562 * 14 13 12 16 16 C 1.38848 * 119.98243 * 359.71688 * 15 14 13 17 17 C 1.38240 * 120.23602 * 179.76665 * 16 15 14 18 18 C 1.38008 * 120.20875 * 0.51780 * 17 16 15 19 19 C 1.39566 * 119.96265 * 359.73773 * 18 17 16 20 20 C 1.47854 * 120.11424 * 179.97438 * 19 18 17 21 21 N 1.34778 * 120.00558 * 0.02910 * 20 19 18 22 22 O 1.21556 * 119.99899 * 180.02562 * 20 19 18 23 23 C 1.38454 * 119.98389 * 180.02562 * 15 14 13 24 24 H 0.97002 * 119.99781 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00141 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 27 27 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 28 28 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 29 29 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 30 30 H 1.08004 * 119.88169 * 0.02704 * 16 15 14 31 31 H 1.08010 * 119.89531 * 180.25887 * 17 16 15 32 32 H 1.08003 * 120.01654 * 179.76692 * 18 17 16 33 33 H 0.97000 * 119.99839 * 359.97438 * 21 20 19 34 34 H 0.96996 * 120.00042 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.10414 * 359.94968 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 6 2.2378 -6.0259 -0.0004 14 8 1.5233 -7.2635 -0.0015 15 6 2.2635 -8.4033 -0.0005 16 6 3.6501 -8.3303 -0.0043 17 6 4.4081 -9.4864 0.0016 18 6 3.7914 -10.7210 0.0005 19 6 2.3983 -10.8044 -0.0009 20 6 1.7341 -12.1254 -0.0026 21 7 2.4742 -13.2518 -0.0021 22 8 0.5206 -12.1955 -0.0043 23 6 1.6345 -9.6368 -0.0020 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3907 -0.0005 26 1 0.6173 -4.9205 -0.8914 27 1 0.6166 -4.9208 0.8885 28 1 2.8639 -5.9682 0.8901 29 1 2.8652 -5.9682 -0.8899 30 1 4.1381 -7.3669 -0.0077 31 1 5.4863 -9.4231 0.0028 32 1 4.3867 -11.6222 0.0014 33 1 3.4426 -13.1959 -0.0010 34 1 2.0384 -14.1184 -0.0036 35 1 0.5561 -9.6949 -0.0033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267575419.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:03 Heat of formation + Delta-G solvation = -122.676803 kcal Electronic energy + Delta-G solvation = -19951.499815 eV Core-core repulsion = 16527.302803 eV Total energy + Delta-G solvation = -3424.197013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48902 -40.52678 -39.98094 -38.12876 -36.08548 -34.85585 -33.48019 -32.89222 -32.06083 -30.58787 -27.41656 -25.76061 -24.27307 -23.43744 -21.52386 -20.98475 -19.95397 -19.66851 -18.29850 -17.86552 -17.36989 -17.28755 -16.93205 -16.50050 -16.38771 -15.92491 -15.75747 -15.59379 -15.18944 -14.73502 -14.37771 -14.28432 -13.95777 -13.53737 -13.08617 -13.03221 -12.80390 -12.69592 -12.43308 -12.11295 -11.98086 -11.77141 -11.56406 -11.25191 -10.75597 -10.49392 -10.09225 -10.07596 -9.31507 -8.50474 -6.00251 -0.26180 0.36621 1.35490 1.41943 1.56079 1.78743 1.87564 1.95984 2.30404 2.55824 2.80587 3.16748 3.33728 3.70856 3.76126 3.91556 3.98460 4.04594 4.11978 4.25892 4.32012 4.49469 4.60294 4.77289 4.78649 4.89736 5.17409 5.26271 5.35113 5.38772 5.61628 5.86097 5.94064 6.31556 6.39891 6.51409 7.05909 7.26251 7.47900 8.00679 8.66969 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.052930 B = 0.002596 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.869268 B =10784.100121 C =11292.521831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.084 0.916 9 N -0.567 5.567 10 C 0.443 3.557 11 O -0.633 6.633 12 C -0.119 4.119 13 C 0.091 3.909 14 O -0.327 6.327 15 C 0.106 3.894 16 C -0.189 4.189 17 C -0.081 4.081 18 C -0.109 4.109 19 C -0.114 4.114 20 C 0.564 3.436 21 N -0.823 5.823 22 O -0.588 6.588 23 C -0.116 4.116 24 H 0.279 0.721 25 H 0.398 0.602 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.136 0.864 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.419 0.581 34 H 0.415 0.585 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -23.061 0.003 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.102 0.898 9 N -0.202 5.202 10 C 0.231 3.769 11 O -0.522 6.522 12 C -0.159 4.159 13 C 0.016 3.984 14 O -0.242 6.242 15 C 0.061 3.939 16 C -0.208 4.208 17 C -0.098 4.098 18 C -0.127 4.127 19 C -0.117 4.117 20 C 0.350 3.650 21 N -0.388 5.388 22 O -0.470 6.470 23 C -0.135 4.135 24 H 0.088 0.912 25 H 0.232 0.768 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.185 0.815 32 H 0.191 0.809 33 H 0.252 0.748 34 H 0.248 0.752 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.411 -22.750 0.002 23.927 hybrid contribution -0.116 0.931 0.001 0.938 sum 7.295 -21.819 0.003 23.007 Atomic orbital electron populations 1.69685 1.06970 1.29463 1.49777 1.26123 0.96563 1.02667 0.95988 0.84825 0.78101 0.76794 0.78337 1.19503 1.19592 1.19603 1.19762 0.92879 0.83782 1.50152 0.89842 1.41937 1.09547 1.04722 1.64014 1.20397 0.87885 0.85847 0.82754 1.90494 1.15627 1.88192 1.57841 1.21219 0.98755 0.89696 1.06271 1.22278 0.93816 0.79871 1.02466 1.85976 1.36456 1.13027 1.88717 1.19062 0.90867 0.86162 0.97793 1.21825 0.92314 1.01770 1.04856 1.21330 1.01711 0.90586 0.96217 1.21583 0.91909 0.99743 0.99502 1.19680 0.94758 0.91892 1.05401 1.18315 0.86144 0.85532 0.75036 1.43499 1.11870 1.07635 1.75750 1.90815 1.15898 1.88202 1.52049 1.20462 1.00800 0.89284 1.02989 0.91152 0.76753 0.87437 0.87445 0.91464 0.91472 0.84627 0.81547 0.80926 0.74756 0.75249 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 1.00 42.24 29.55 68.60 2.03 44.27 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.34 -18.83 9.68 84.04 0.81 -18.02 16 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.57 -28.84 5.29 -306.98 -1.62 -30.46 16 10 C 0.44 20.67 7.78 87.66 0.68 21.35 16 11 O -0.63 -33.66 15.56 -3.08 -0.05 -33.71 16 12 C -0.12 -4.13 6.07 29.85 0.18 -3.95 16 13 C 0.09 2.92 4.03 71.98 0.29 3.21 16 14 O -0.33 -10.20 10.13 -92.56 -0.94 -11.14 16 15 C 0.11 2.93 6.68 22.47 0.15 3.08 16 16 C -0.19 -4.28 9.03 22.42 0.20 -4.07 16 17 C -0.08 -1.22 10.03 22.22 0.22 -1.00 16 18 C -0.11 -1.41 9.54 22.54 0.21 -1.19 16 19 C -0.11 -2.32 5.87 -20.10 -0.12 -2.44 16 20 C 0.56 11.46 8.05 86.79 0.70 12.16 16 21 N -0.82 -7.29 8.82 -175.59 -1.55 -8.84 16 22 O -0.59 -17.80 17.18 -3.89 -0.07 -17.87 16 23 C -0.12 -3.08 9.53 22.63 0.22 -2.87 16 24 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.40 19.37 7.90 -92.71 -0.73 18.63 16 26 H 0.11 3.36 8.14 -2.39 -0.02 3.35 16 27 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 28 H 0.07 2.18 7.63 -2.39 -0.02 2.16 16 29 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 30 H 0.14 3.14 6.28 -2.91 -0.02 3.12 16 31 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.17 0.52 6.40 -2.91 -0.02 0.50 16 33 H 0.42 0.63 6.86 -92.71 -0.64 -0.01 16 34 H 0.41 2.65 8.93 -92.71 -0.83 1.82 16 35 H 0.12 3.69 7.65 -2.91 -0.02 3.67 16 Total: -1.00 -75.01 311.75 1.08 -73.93 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -1.02 Total: 26.83 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 4.02 Total: 6.03 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.89 Total: -88.34 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -1.05 Total: -62.72 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -75.01 1.08 -73.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267575419.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.744 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds