Wall clock time and date at job start Mon Mar 30 2020 23:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48497 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47253 * 300.00355 * 3 2 1 6 6 H 1.48501 * 109.47198 * 60.00310 * 3 2 1 7 7 C 1.37870 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47078 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00035 * 180.02562 * 11 10 9 13 13 O 1.21289 * 120.00043 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00140 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47481 * 179.97438 * 14 12 11 16 16 C 1.38238 * 119.99764 * 89.99892 * 15 14 12 17 17 C 1.38234 * 119.99693 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.02562 * 17 16 15 19 19 N 1.48026 * 119.99930 * 179.97438 * 18 17 16 20 20 O 1.21793 * 119.99867 * 0.02562 * 19 18 17 21 21 O 1.21799 * 119.99956 * 179.97438 * 19 18 17 22 22 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 23 23 C 1.38234 * 120.00189 * 270.02215 * 15 14 12 24 24 H 0.96998 * 119.99944 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47237 * 59.99943 * 9 7 2 26 26 H 1.08997 * 109.47377 * 300.00017 * 9 7 2 27 27 H 1.09000 * 109.47029 * 60.00476 * 10 9 7 28 28 H 1.08996 * 109.47799 * 299.99854 * 10 9 7 29 29 H 0.97000 * 119.99737 * 0.02562 * 11 10 9 30 30 H 1.09004 * 109.47170 * 59.99574 * 14 12 11 31 31 H 1.08997 * 109.47316 * 299.99727 * 14 12 11 32 32 H 1.07991 * 120.00287 * 0.02562 * 16 15 14 33 33 H 1.08004 * 120.00214 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.99939 * 179.72815 * 22 18 17 35 35 H 1.07999 * 119.99990 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0024 12 6 2.1869 -6.0979 -0.0031 13 8 3.3997 -6.0979 -0.0036 14 6 1.4335 -7.4031 -0.0031 15 6 2.4127 -8.5485 -0.0045 16 6 2.8629 -9.0744 1.1920 17 6 3.7608 -10.1254 1.1908 18 6 4.2089 -10.6502 -0.0070 19 7 5.1709 -11.7753 -0.0083 20 8 5.5671 -12.2389 1.0459 21 8 5.5654 -12.2380 -1.0637 22 6 3.7634 -10.1204 -1.2035 23 6 2.8613 -9.0729 -1.2023 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5572 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6039 -0.8922 29 1 0.5430 -4.9308 -0.0024 30 1 0.8063 -7.4606 -0.8928 31 1 0.8072 -7.4612 0.8871 32 1 2.5125 -8.6647 2.1278 33 1 4.1128 -10.5361 2.1256 34 1 4.1170 -10.5275 -2.1393 35 1 2.5096 -8.6621 -2.1371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273050498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:55 Heat of formation + Delta-G solvation = -31.623869 kcal Electronic energy + Delta-G solvation = -19927.920049 eV Core-core repulsion = 16507.671388 eV Total energy + Delta-G solvation = -3420.248661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.34779 -40.27507 -38.94155 -36.73692 -35.08084 -33.66035 -32.94860 -31.71784 -30.25913 -28.84606 -25.92106 -24.55012 -23.51377 -22.21964 -21.10117 -20.28427 -19.57863 -18.84266 -17.70050 -17.07287 -16.56100 -16.21676 -16.11779 -15.20853 -15.02469 -14.76690 -14.54213 -14.18117 -13.70996 -13.47574 -13.03216 -12.51818 -12.31299 -12.30433 -11.83057 -11.64792 -11.35494 -11.31783 -11.31141 -11.12778 -10.70938 -10.46408 -10.07102 -9.79132 -9.67949 -9.52263 -9.27929 -8.70865 -8.48384 -6.18422 -4.21635 -0.38586 0.67991 1.12082 1.22164 2.72971 2.91395 3.22287 3.30278 3.34760 3.55474 4.06155 4.08856 4.21233 4.34502 4.50882 4.63525 4.88310 4.98375 5.00862 5.15286 5.19036 5.34126 5.43980 5.49459 5.87932 5.96181 6.18050 6.20236 6.26168 6.59105 6.71241 7.39464 7.46126 7.49111 7.77456 7.80616 8.16352 8.41209 8.84488 9.44012 10.93117 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044677 B = 0.002527 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.576149 B =11078.965945 C =11272.215259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.719 5.719 12 C 0.506 3.494 13 O -0.544 6.544 14 C -0.116 4.116 15 C -0.003 4.003 16 C -0.105 4.105 17 C -0.052 4.052 18 C -0.051 4.051 19 N 0.031 4.969 20 O -0.165 6.165 21 O -0.165 6.165 22 C -0.052 4.052 23 C -0.105 4.105 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.399 0.601 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 -19.803 -0.006 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.369 5.369 12 C 0.291 3.709 13 O -0.422 6.422 14 C -0.156 4.156 15 C -0.004 4.004 16 C -0.124 4.124 17 C -0.071 4.071 18 C -0.134 4.134 19 N 0.550 4.450 20 O -0.380 6.380 21 O -0.380 6.380 22 C -0.071 4.071 23 C -0.124 4.124 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.233 0.767 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.299 -19.113 -0.007 19.115 hybrid contribution 0.162 0.740 0.000 0.758 sum 0.461 -18.373 -0.007 18.379 Atomic orbital electron populations 1.69958 1.06098 1.26882 1.50318 1.24997 0.94909 0.99481 0.94883 0.86453 0.80167 0.83249 0.77693 1.19570 1.20874 1.20871 1.21074 0.93287 0.90343 1.51458 0.92198 1.19331 0.94169 0.91121 0.97880 1.21768 0.96095 0.81322 1.00914 1.46338 1.10654 1.06485 1.73413 1.20207 0.88197 0.85083 0.77408 1.90736 1.13799 1.87663 1.49982 1.20886 0.97549 0.90762 1.06432 1.19848 0.93988 0.93282 0.93279 1.21082 0.96989 0.95369 0.98918 1.21009 0.94428 0.94588 0.97082 1.21111 1.00330 0.94724 0.97230 1.43644 1.00002 1.01017 1.00366 1.94529 1.60129 1.62584 1.20783 1.94531 1.60232 1.62640 1.20631 1.21010 0.94407 0.94570 0.97108 1.21084 0.96936 0.95445 0.98901 0.92824 0.95908 0.95900 0.92450 0.92457 0.76693 0.87025 0.87022 0.83534 0.82947 0.82945 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.99 9.11 -34.44 -0.31 -14.31 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.37 5.61 -4.04 -0.02 2.35 16 11 N -0.72 -10.66 5.56 -60.29 -0.33 -10.99 16 12 C 0.51 6.99 7.82 -10.99 -0.09 6.90 16 13 O -0.54 -9.88 16.03 5.55 0.09 -9.79 16 14 C -0.12 -0.96 5.83 -29.04 -0.17 -1.13 16 15 C 0.00 -0.03 4.37 -104.63 -0.46 -0.49 16 16 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 17 C -0.05 -0.50 9.56 -39.58 -0.38 -0.87 16 18 C -0.05 -0.56 6.85 -79.95 -0.55 -1.11 16 19 N 0.03 0.40 4.45 33.96 0.15 0.56 16 20 O -0.16 -2.22 18.45 -29.46 -0.54 -2.76 16 21 O -0.17 -2.22 18.45 -29.46 -0.54 -2.77 16 22 C -0.05 -0.49 9.56 -39.58 -0.38 -0.87 16 23 C -0.11 -0.92 9.70 -39.58 -0.38 -1.31 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.40 4.85 8.47 -40.82 -0.35 4.51 16 30 H 0.11 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.11 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.15 1.22 7.61 -52.48 -0.40 0.82 16 34 H 0.15 1.22 7.61 -52.48 -0.40 0.82 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -32.80 320.35 -8.06 -40.86 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.06 Total: -0.67 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -3.36 Total: -10.48 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.55 Total: -35.02 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.00 Total: -15.33 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.80 -8.06 -40.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273050498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.241 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds