Wall clock time and date at job start Mon Mar 30 2020 23:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48497 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47253 * 300.00355 * 3 2 1 6 6 H 1.48501 * 109.47198 * 60.00310 * 3 2 1 7 7 C 1.37870 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47078 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00035 * 180.02562 * 11 10 9 13 13 O 1.21289 * 120.00043 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00140 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47481 * 179.97438 * 14 12 11 16 16 C 1.38238 * 119.99764 * 89.99892 * 15 14 12 17 17 C 1.38234 * 119.99693 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.02562 * 17 16 15 19 19 N 1.48026 * 119.99930 * 179.97438 * 18 17 16 20 20 O 1.21793 * 119.99867 * 0.02562 * 19 18 17 21 21 O 1.21799 * 119.99956 * 179.97438 * 19 18 17 22 22 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 23 23 C 1.38234 * 120.00189 * 270.02215 * 15 14 12 24 24 H 0.96998 * 119.99944 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47237 * 59.99943 * 9 7 2 26 26 H 1.08997 * 109.47377 * 300.00017 * 9 7 2 27 27 H 1.09000 * 109.47029 * 60.00476 * 10 9 7 28 28 H 1.08996 * 109.47799 * 299.99854 * 10 9 7 29 29 H 0.97000 * 119.99737 * 0.02562 * 11 10 9 30 30 H 1.09004 * 109.47170 * 59.99574 * 14 12 11 31 31 H 1.08997 * 109.47316 * 299.99727 * 14 12 11 32 32 H 1.07991 * 120.00287 * 0.02562 * 16 15 14 33 33 H 1.08004 * 120.00214 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.99939 * 179.72815 * 22 18 17 35 35 H 1.07999 * 119.99990 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0024 12 6 2.1869 -6.0979 -0.0031 13 8 3.3997 -6.0979 -0.0036 14 6 1.4335 -7.4031 -0.0031 15 6 2.4127 -8.5485 -0.0045 16 6 2.8629 -9.0744 1.1920 17 6 3.7608 -10.1254 1.1908 18 6 4.2089 -10.6502 -0.0070 19 7 5.1709 -11.7753 -0.0083 20 8 5.5671 -12.2389 1.0459 21 8 5.5654 -12.2380 -1.0637 22 6 3.7634 -10.1204 -1.2035 23 6 2.8613 -9.0729 -1.2023 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5572 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6039 -0.8922 29 1 0.5430 -4.9308 -0.0024 30 1 0.8063 -7.4606 -0.8928 31 1 0.8072 -7.4612 0.8871 32 1 2.5125 -8.6647 2.1278 33 1 4.1128 -10.5361 2.1256 34 1 4.1170 -10.5275 -2.1393 35 1 2.5096 -8.6621 -2.1371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273050498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:55 Heat of formation + Delta-G solvation = -51.880986 kcal Electronic energy + Delta-G solvation = -19928.798463 eV Core-core repulsion = 16507.671388 eV Total energy + Delta-G solvation = -3421.127076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.28453 -41.18128 -39.94606 -37.72175 -36.60764 -34.82397 -34.44546 -32.40121 -31.78121 -29.93977 -27.17055 -26.04109 -24.20263 -23.30952 -22.64011 -21.40038 -20.41266 -19.80132 -18.65883 -18.61248 -17.98076 -17.27251 -16.95587 -16.47471 -16.18120 -16.12259 -15.64810 -14.98639 -14.81048 -14.75110 -14.33529 -13.92914 -13.23057 -13.16545 -13.13653 -12.91825 -12.79142 -12.53203 -12.35517 -12.34909 -12.30392 -12.21755 -11.67182 -11.45653 -11.00825 -10.61484 -10.35921 -10.35160 -10.00561 -8.25528 -6.35222 -1.27266 0.00776 0.25059 0.36095 1.39634 1.41767 1.53677 1.66327 2.09079 2.37743 2.57634 3.09750 3.38542 3.38822 3.52661 3.84984 3.92900 4.00358 4.29191 4.40323 4.51418 4.51720 4.59046 4.70254 4.77948 4.80773 4.87281 5.14428 5.20833 5.30247 5.49174 5.50123 5.59642 5.79228 6.16326 6.45165 6.64721 6.78752 7.30495 7.34451 8.86168 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044677 B = 0.002527 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.576149 B =11078.965945 C =11272.215259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.022 3.978 10 C 0.141 3.859 11 N -0.715 5.715 12 C 0.507 3.493 13 O -0.590 6.590 14 C -0.102 4.102 15 C -0.011 4.011 16 C -0.106 4.106 17 C -0.057 4.057 18 C -0.070 4.070 19 N 0.032 4.968 20 O -0.183 6.183 21 O -0.183 6.183 22 C -0.057 4.057 23 C -0.106 4.106 24 H 0.266 0.734 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.415 0.585 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 -19.709 -0.004 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.366 5.366 12 C 0.295 3.705 13 O -0.471 6.471 14 C -0.141 4.141 15 C -0.011 4.011 16 C -0.124 4.124 17 C -0.076 4.076 18 C -0.153 4.153 19 N 0.546 4.454 20 O -0.396 6.396 21 O -0.396 6.396 22 C -0.076 4.076 23 C -0.124 4.124 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.251 0.749 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.187 0.813 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.658 -19.061 -0.005 19.073 hybrid contribution 0.417 0.723 -0.001 0.835 sum -0.241 -18.339 -0.006 18.340 Atomic orbital electron populations 1.70045 1.07392 1.27907 1.51112 1.25814 0.95771 1.02920 0.94517 0.85460 0.78967 0.79106 0.77903 1.19158 1.20272 1.20261 1.21510 0.93511 0.92151 1.51326 0.92584 1.19137 0.94241 0.91629 0.96530 1.21172 0.94978 0.82546 0.99621 1.46119 1.11316 1.05386 1.73814 1.21108 0.87831 0.86180 0.75377 1.90728 1.16172 1.88386 1.51805 1.20913 0.97023 0.86326 1.09856 1.20097 0.94091 0.93494 0.93465 1.21404 0.96278 0.94731 0.99978 1.21233 0.94555 0.94817 0.97045 1.21363 1.00712 0.94638 0.98559 1.43957 1.00081 1.01341 0.99996 1.94507 1.60864 1.63339 1.20892 1.94509 1.60969 1.63395 1.20742 1.21234 0.94544 0.94796 0.97073 1.21405 0.96224 0.94805 0.99960 0.92542 0.97098 0.97088 0.93795 0.93804 0.74902 0.83577 0.83573 0.81311 0.82010 0.82013 0.81310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.31 13.29 21.45 0.28 -52.03 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -29.35 9.11 25.60 0.23 -29.12 16 8 H 0.06 2.98 7.74 -2.91 -0.02 2.95 16 9 C 0.02 1.04 5.09 29.85 0.15 1.19 16 10 C 0.14 5.48 5.61 86.38 0.48 5.96 16 11 N -0.72 -19.86 5.56 -463.06 -2.57 -22.43 16 12 C 0.51 12.70 7.82 87.66 0.69 13.39 16 13 O -0.59 -20.63 16.03 -3.06 -0.05 -20.67 16 14 C -0.10 -1.24 5.83 29.10 0.17 -1.07 16 15 C -0.01 -0.16 4.37 -19.87 -0.09 -0.25 16 16 C -0.11 -1.58 9.70 22.27 0.22 -1.36 16 17 C -0.06 -1.02 9.56 22.27 0.21 -0.81 16 18 C -0.07 -1.48 6.85 36.37 0.25 -1.23 16 19 N 0.03 0.84 4.45 -46.46 -0.21 0.63 16 20 O -0.18 -5.01 18.45 18.89 0.35 -4.66 16 21 O -0.18 -5.02 18.45 18.89 0.35 -4.67 16 22 C -0.06 -1.02 9.56 22.27 0.21 -0.81 16 23 C -0.11 -1.58 9.70 22.27 0.22 -1.36 16 24 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 25 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.41 9.04 8.47 -92.71 -0.79 8.26 16 30 H 0.15 0.88 8.09 -2.38 -0.02 0.86 16 31 H 0.15 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.17 1.69 8.06 -2.92 -0.02 1.67 16 33 H 0.16 2.44 7.61 -2.91 -0.02 2.42 16 34 H 0.16 2.45 7.61 -2.91 -0.02 2.42 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -71.81 320.35 3.72 -68.09 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.33 Total: 5.84 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 3.21 Total: -14.54 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -2.49 Total: -73.82 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: 0.65 Total: -30.00 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -71.81 3.72 -68.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273050498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.212 kcal (2) G-P(sol) polarization free energy of solvation -71.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds