Wall clock time and date at job start Mon Mar 30 2020 23:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00231 * 2 1 4 4 H 1.48500 * 109.47167 * 270.00351 * 3 2 1 5 5 H 1.48500 * 109.46967 * 30.00363 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00365 * 3 2 1 7 7 C 1.37881 * 119.99325 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99399 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46987 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46832 * 180.02562 * 10 9 7 12 12 C 1.34787 * 119.99930 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99412 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00084 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47138 * 180.02562 * 14 12 11 16 16 C 1.38256 * 120.00151 * 100.46905 * 15 14 12 17 17 C 1.38213 * 120.00154 * 180.28126 * 16 15 14 18 18 C 1.38255 * 119.99653 * 359.48232 * 17 16 15 19 19 C 1.38210 * 120.00416 * 0.49298 * 18 17 16 20 20 C 1.38214 * 120.00248 * 280.49051 * 15 14 12 21 21 N 1.48021 * 119.99722 * 359.97438 * 20 15 14 22 22 O 1.21801 * 120.00099 * 185.92058 * 21 20 15 23 23 O 1.21801 * 119.99890 * 5.92623 * 21 20 15 24 24 H 0.97007 * 120.00129 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47220 * 60.00738 * 9 7 2 26 26 H 1.09005 * 109.47507 * 300.00295 * 9 7 2 27 27 H 1.09000 * 109.47598 * 60.00687 * 10 9 7 28 28 H 1.08994 * 109.47348 * 300.00103 * 10 9 7 29 29 H 0.96998 * 120.00625 * 0.02562 * 11 10 9 30 30 H 1.09005 * 109.47021 * 60.00292 * 14 12 11 31 31 H 1.09000 * 109.47560 * 300.00384 * 14 12 11 32 32 H 1.08005 * 119.99735 * 359.97438 * 16 15 14 33 33 H 1.08005 * 120.00054 * 179.72631 * 17 16 15 34 34 H 1.08001 * 119.99817 * 180.25981 * 18 17 16 35 35 H 1.07997 * 120.00406 * 179.76559 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5124 -4.9308 -0.0012 12 6 2.1862 -6.0982 -0.0018 13 8 3.3991 -6.0981 -0.0014 14 6 1.4327 -7.4032 -0.0018 15 6 2.4119 -8.5486 -0.0020 16 6 2.6958 -9.2156 1.1754 17 6 3.5982 -10.2624 1.1763 18 6 4.2090 -10.6495 -0.0020 19 6 3.9249 -9.9832 -1.1791 20 6 3.0266 -8.9323 -1.1789 21 7 2.7226 -8.2183 -2.4395 22 8 3.1794 -8.6225 -3.4937 23 8 2.0157 -7.2266 -2.4224 24 1 -0.4851 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6244 -2.5571 0.8897 27 1 2.8716 -3.6045 0.8895 28 1 2.8717 -3.6044 -0.8904 29 1 0.5424 -4.9308 -0.0019 30 1 0.8057 -7.4606 -0.8916 31 1 0.8063 -7.4612 0.8883 32 1 2.2160 -8.9153 2.0953 33 1 3.8233 -10.7805 2.0969 34 1 4.9111 -11.4702 -0.0021 35 1 4.4049 -10.2832 -2.0989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273079743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:58 Heat of formation + Delta-G solvation = -22.471456 kcal Electronic energy + Delta-G solvation = -20944.315599 eV Core-core repulsion = 17524.463816 eV Total energy + Delta-G solvation = -3419.851783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.26212 -39.98676 -38.83612 -36.57984 -34.86308 -33.32035 -32.79436 -32.12120 -29.94066 -28.20142 -26.30261 -24.61566 -22.93562 -22.40909 -20.96526 -20.19517 -19.08941 -18.55715 -17.60734 -16.76897 -16.64561 -16.19996 -16.03882 -15.26581 -14.82196 -14.78987 -14.44416 -13.70893 -13.53817 -13.38427 -12.88254 -12.56663 -12.27860 -12.25044 -11.81636 -11.40427 -11.17444 -11.08093 -11.00709 -10.73657 -10.61764 -10.29231 -9.87627 -9.83966 -9.60903 -9.36123 -9.13111 -8.51363 -8.32000 -6.06473 -4.08983 -0.23273 0.65275 1.25987 1.42718 2.98355 3.01564 3.31919 3.37751 3.41707 3.72136 4.06386 4.11638 4.36563 4.44911 4.62012 4.64671 4.84365 5.09444 5.16272 5.24308 5.30644 5.41965 5.54249 5.71961 5.76894 6.02885 6.36825 6.39563 6.45430 6.78021 6.94610 7.55112 7.66179 7.67839 7.91713 8.02673 8.30795 8.65159 8.96870 9.55579 11.05163 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030832 B = 0.003460 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.917412 B = 8089.814588 C = 8429.899247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.715 5.715 12 C 0.526 3.474 13 O -0.556 6.556 14 C -0.125 4.125 15 C 0.010 3.990 16 C -0.113 4.113 17 C -0.067 4.067 18 C -0.124 4.124 19 C -0.055 4.055 20 C -0.029 4.029 21 N 0.033 4.967 22 O -0.170 6.170 23 O -0.150 6.150 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.022 0.978 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.399 0.601 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -23.975 2.749 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.364 5.364 12 C 0.311 3.689 13 O -0.435 6.435 14 C -0.165 4.165 15 C 0.008 3.992 16 C -0.131 4.131 17 C -0.085 4.085 18 C -0.143 4.143 19 C -0.074 4.074 20 C -0.112 4.112 21 N 0.551 4.449 22 O -0.383 6.383 23 O -0.366 6.366 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.233 0.767 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.696 -24.160 3.336 24.667 hybrid contribution -0.119 1.167 -0.357 1.226 sum 3.577 -22.992 2.979 23.459 Atomic orbital electron populations 1.69955 1.06067 1.26832 1.50441 1.24990 0.94893 0.99374 0.95020 0.86517 0.79806 0.83030 0.78231 1.20522 1.21191 1.19777 1.21052 0.93226 0.90426 1.51266 0.92319 1.19325 0.94205 0.91040 0.97912 1.21721 0.96048 0.81386 1.00711 1.46185 1.10544 1.06265 1.73362 1.19839 0.87862 0.84822 0.76346 1.90678 1.13964 1.87723 1.51099 1.21123 0.97785 0.90812 1.06804 1.19331 0.94379 0.94444 0.91006 1.21151 0.99010 0.96020 0.96951 1.21575 0.93268 0.94841 0.98821 1.21178 1.00949 1.00819 0.91304 1.21036 0.93763 0.91866 1.00783 1.20925 1.06097 0.99664 0.84548 1.43522 0.98769 1.00121 1.02488 1.94508 1.54086 1.70451 1.19251 1.94532 1.34008 1.14717 1.93386 0.92867 0.95719 0.95977 0.92720 0.92509 0.76739 0.85608 0.87437 0.83594 0.84000 0.83709 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 10 C 0.12 2.70 5.61 -4.04 -0.02 2.68 16 11 N -0.71 -12.69 5.56 -60.29 -0.33 -13.03 16 12 C 0.53 9.04 6.23 -10.98 -0.07 8.97 16 13 O -0.56 -11.70 15.93 5.56 0.09 -11.61 16 14 C -0.13 -1.52 5.13 -29.04 -0.15 -1.67 16 15 C 0.01 0.12 4.44 -104.63 -0.46 -0.34 16 16 C -0.11 -0.98 9.67 -39.58 -0.38 -1.37 16 17 C -0.07 -0.45 10.05 -39.58 -0.40 -0.85 16 18 C -0.12 -0.87 10.05 -39.59 -0.40 -1.27 16 19 C -0.06 -0.55 9.56 -39.59 -0.38 -0.93 16 20 C -0.03 -0.38 6.69 -79.95 -0.53 -0.92 16 21 N 0.03 0.53 4.45 33.96 0.15 0.68 16 22 O -0.17 -2.73 18.46 -29.46 -0.54 -3.27 16 23 O -0.15 -2.61 14.21 -29.48 -0.42 -3.03 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.40 6.02 8.47 -40.82 -0.35 5.67 16 30 H 0.13 1.49 6.12 -51.93 -0.32 1.17 16 31 H 0.11 0.91 8.00 -51.93 -0.42 0.50 16 32 H 0.15 0.92 8.03 -52.48 -0.42 0.50 16 33 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 34 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 35 H 0.15 1.29 7.62 -52.49 -0.40 0.89 16 LS Contribution 312.81 15.07 4.71 4.71 Total: -1.00 -35.09 312.81 -7.96 -43.04 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -3.98 Total: 0.42 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -3.35 Total: -8.94 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.55 Total: -37.94 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.87 Total: -17.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.09 -7.96 -43.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273079743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.572 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds