Wall clock time and date at job start Mon Mar 30 2020 23:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00231 * 2 1 4 4 H 1.48500 * 109.47167 * 270.00351 * 3 2 1 5 5 H 1.48500 * 109.46967 * 30.00363 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00365 * 3 2 1 7 7 C 1.37881 * 119.99325 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99399 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46987 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46832 * 180.02562 * 10 9 7 12 12 C 1.34787 * 119.99930 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99412 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00084 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47138 * 180.02562 * 14 12 11 16 16 C 1.38256 * 120.00151 * 100.46905 * 15 14 12 17 17 C 1.38213 * 120.00154 * 180.28126 * 16 15 14 18 18 C 1.38255 * 119.99653 * 359.48232 * 17 16 15 19 19 C 1.38210 * 120.00416 * 0.49298 * 18 17 16 20 20 C 1.38214 * 120.00248 * 280.49051 * 15 14 12 21 21 N 1.48021 * 119.99722 * 359.97438 * 20 15 14 22 22 O 1.21801 * 120.00099 * 185.92058 * 21 20 15 23 23 O 1.21801 * 119.99890 * 5.92623 * 21 20 15 24 24 H 0.97007 * 120.00129 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47220 * 60.00738 * 9 7 2 26 26 H 1.09005 * 109.47507 * 300.00295 * 9 7 2 27 27 H 1.09000 * 109.47598 * 60.00687 * 10 9 7 28 28 H 1.08994 * 109.47348 * 300.00103 * 10 9 7 29 29 H 0.96998 * 120.00625 * 0.02562 * 11 10 9 30 30 H 1.09005 * 109.47021 * 60.00292 * 14 12 11 31 31 H 1.09000 * 109.47560 * 300.00384 * 14 12 11 32 32 H 1.08005 * 119.99735 * 359.97438 * 16 15 14 33 33 H 1.08005 * 120.00054 * 179.72631 * 17 16 15 34 34 H 1.08001 * 119.99817 * 180.25981 * 18 17 16 35 35 H 1.07997 * 120.00406 * 179.76559 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5124 -4.9308 -0.0012 12 6 2.1862 -6.0982 -0.0018 13 8 3.3991 -6.0981 -0.0014 14 6 1.4327 -7.4032 -0.0018 15 6 2.4119 -8.5486 -0.0020 16 6 2.6958 -9.2156 1.1754 17 6 3.5982 -10.2624 1.1763 18 6 4.2090 -10.6495 -0.0020 19 6 3.9249 -9.9832 -1.1791 20 6 3.0266 -8.9323 -1.1789 21 7 2.7226 -8.2183 -2.4395 22 8 3.1794 -8.6225 -3.4937 23 8 2.0157 -7.2266 -2.4224 24 1 -0.4851 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6244 -2.5571 0.8897 27 1 2.8716 -3.6045 0.8895 28 1 2.8717 -3.6044 -0.8904 29 1 0.5424 -4.9308 -0.0019 30 1 0.8057 -7.4606 -0.8916 31 1 0.8063 -7.4612 0.8883 32 1 2.2160 -8.9153 2.0953 33 1 3.8233 -10.7805 2.0969 34 1 4.9111 -11.4702 -0.0021 35 1 4.4049 -10.2832 -2.0989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273079743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:57 Heat of formation + Delta-G solvation = -45.886111 kcal Electronic energy + Delta-G solvation = -20945.330934 eV Core-core repulsion = 17524.463816 eV Total energy + Delta-G solvation = -3420.867118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.34805 -41.04632 -39.95590 -37.76220 -36.60504 -34.82402 -34.17307 -32.88521 -31.69007 -29.33694 -27.38732 -26.43846 -23.77025 -23.45729 -22.74071 -21.56549 -20.05582 -19.66862 -18.80127 -18.53498 -17.89975 -17.37466 -17.02814 -16.52355 -16.37564 -16.13118 -15.63658 -14.99217 -14.81769 -14.48070 -14.23590 -13.85552 -13.51992 -13.24189 -13.19765 -12.93421 -12.60368 -12.55002 -12.44796 -12.31918 -12.23419 -11.81539 -11.67716 -11.47921 -10.99079 -10.60731 -10.53718 -10.13875 -10.01545 -8.24313 -6.34853 -1.21943 -0.01845 0.30625 0.47059 1.40871 1.42049 1.53147 1.66662 2.16551 2.39335 2.56411 3.10178 3.23194 3.38584 3.76438 3.88716 3.99431 4.07358 4.17918 4.35426 4.44724 4.48561 4.50471 4.72114 4.84170 4.89161 5.05122 5.15356 5.23551 5.29488 5.49016 5.58423 5.59793 5.78411 6.16127 6.46469 6.61615 6.77876 7.26964 7.34204 8.87578 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030832 B = 0.003460 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.917412 B = 8089.814588 C = 8429.899247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.144 3.856 11 N -0.713 5.713 12 C 0.525 3.475 13 O -0.596 6.596 14 C -0.115 4.115 15 C -0.016 4.016 16 C -0.114 4.114 17 C -0.050 4.050 18 C -0.111 4.111 19 C -0.068 4.068 20 C -0.061 4.061 21 N 0.035 4.965 22 O -0.183 6.183 23 O -0.199 6.199 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.013 0.987 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.412 0.588 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.173 0.827 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -25.913 4.811 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.020 3.980 11 N -0.363 5.363 12 C 0.313 3.687 13 O -0.478 6.478 14 C -0.154 4.154 15 C -0.018 4.018 16 C -0.132 4.132 17 C -0.068 4.068 18 C -0.129 4.129 19 C -0.087 4.087 20 C -0.145 4.145 21 N 0.546 4.454 22 O -0.397 6.397 23 O -0.406 6.406 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.248 0.752 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.191 0.809 33 H 0.204 0.796 34 H 0.202 0.798 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.483 -26.074 5.390 27.000 hybrid contribution -0.311 1.589 -0.922 1.863 sum 4.172 -24.485 4.468 25.236 Atomic orbital electron populations 1.70056 1.07493 1.28026 1.50892 1.25868 0.95827 1.03063 0.94360 0.85444 0.78650 0.78459 0.78489 1.19923 1.20234 1.19065 1.21459 0.93484 0.92054 1.51713 0.92571 1.19125 0.94179 0.91615 0.96454 1.21169 0.95037 0.82454 0.99330 1.46021 1.11135 1.05393 1.73773 1.20679 0.87614 0.85919 0.74468 1.90644 1.16027 1.88418 1.52677 1.21066 0.97766 0.87893 1.08712 1.19540 0.95188 0.95201 0.91838 1.21601 0.99170 0.95991 0.96483 1.22168 0.90946 0.93327 1.00328 1.21719 1.00483 1.00680 0.90044 1.21389 0.93280 0.91400 1.02592 1.21306 1.08630 1.01233 0.83288 1.44032 0.98031 0.99864 1.03511 1.94456 1.54062 1.70392 1.20768 1.94507 1.35841 1.16385 1.93868 0.92485 0.97494 0.96837 0.93383 0.94608 0.75183 0.85729 0.83290 0.80912 0.79586 0.79764 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.55 9.11 25.60 0.23 -31.31 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.23 5.09 29.85 0.15 1.39 16 10 C 0.14 6.53 5.61 86.38 0.48 7.01 16 11 N -0.71 -25.93 5.56 -463.05 -2.57 -28.50 16 12 C 0.53 18.24 6.23 87.65 0.55 18.79 16 13 O -0.60 -25.63 15.93 -3.04 -0.05 -25.68 16 14 C -0.12 -2.71 5.13 29.10 0.15 -2.56 16 15 C -0.02 -0.35 4.44 -19.87 -0.09 -0.44 16 16 C -0.11 -1.57 9.67 22.27 0.22 -1.36 16 17 C -0.05 -0.42 10.05 22.27 0.22 -0.20 16 18 C -0.11 -1.10 10.05 22.27 0.22 -0.88 16 19 C -0.07 -1.23 9.56 22.27 0.21 -1.02 16 20 C -0.06 -1.58 6.69 36.37 0.24 -1.34 16 21 N 0.04 1.18 4.45 -46.46 -0.21 0.97 16 22 O -0.18 -6.19 18.46 18.88 0.35 -5.84 16 23 O -0.20 -7.36 14.21 18.90 0.27 -7.09 16 24 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 25 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.41 12.65 8.47 -92.71 -0.79 11.87 16 30 H 0.12 3.00 6.12 -2.38 -0.01 2.99 16 31 H 0.15 2.14 8.00 -2.39 -0.02 2.12 16 32 H 0.17 1.37 8.03 -2.91 -0.02 1.35 16 33 H 0.19 -0.01 8.06 -2.91 -0.02 -0.03 16 34 H 0.19 0.37 8.06 -2.91 -0.02 0.34 16 35 H 0.16 2.54 7.62 -2.91 -0.02 2.52 16 Total: -1.00 -79.91 312.81 3.50 -76.42 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.34 Total: 8.98 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 3.06 Total: -11.02 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.49 Total: -82.28 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: 0.57 Total: -38.61 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -79.91 3.50 -76.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273079743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.531 kcal (2) G-P(sol) polarization free energy of solvation -79.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds