Wall clock time and date at job start Mon Mar 30 2020 23:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 11 16 16 C 1.38258 * 119.99679 * 269.72403 * 15 14 12 17 17 C 1.38209 * 119.99862 * 179.79213 * 16 15 14 18 18 C 1.38259 * 119.99909 * 0.45975 * 17 16 15 19 19 C 1.38215 * 120.00269 * 359.77333 * 18 17 16 20 20 N 1.48016 * 120.00315 * 180.02562 * 19 18 17 21 21 O 1.21799 * 119.99994 * 180.02562 * 20 19 18 22 22 O 1.21797 * 120.00157 * 0.02562 * 20 19 18 23 23 C 1.38208 * 119.99888 * 90.00051 * 15 14 12 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 26 26 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 27 27 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 28 28 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 29 29 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 30 30 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 31 31 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 32 32 H 1.08000 * 119.99915 * 0.02562 * 16 15 14 33 33 H 1.08000 * 120.00068 * 180.25148 * 17 16 15 34 34 H 1.08002 * 120.00201 * 179.78895 * 18 17 16 35 35 H 1.08000 * 120.00305 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 7 5.4866 -2.6366 -0.0002 12 6 6.1605 -3.8038 -0.0016 13 8 5.5540 -4.8541 -0.0035 14 6 7.6675 -3.8038 0.0058 15 6 8.1697 -5.2246 0.0093 16 6 8.3996 -5.8736 1.2083 17 6 8.8561 -7.1781 1.2116 18 6 9.0920 -7.8309 0.0159 19 6 8.8668 -7.1806 -1.1827 20 7 9.1188 -7.8797 -2.4628 21 8 8.9207 -7.3064 -3.5191 22 8 9.5241 -9.0282 -2.4600 23 6 8.4060 -5.8770 -1.1860 24 1 -0.4849 0.8400 0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6796 -0.8895 27 1 3.6586 -3.1494 -0.8920 28 1 3.6579 -3.1514 0.8879 29 1 5.9715 -1.7965 0.0009 30 1 8.0352 -3.2906 -0.8827 31 1 8.0263 -3.2893 0.8972 32 1 8.2188 -5.3623 2.1423 33 1 9.0318 -7.6864 2.1482 34 1 9.4520 -8.8491 0.0184 35 1 8.2303 -5.3687 -2.1225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273083925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:33 Heat of formation + Delta-G solvation = -26.474844 kcal Electronic energy + Delta-G solvation = -20145.808714 eV Core-core repulsion = 16725.783331 eV Total energy + Delta-G solvation = -3420.025383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34965 -40.29426 -38.99206 -36.73006 -35.17583 -33.58528 -32.86880 -32.16443 -30.45165 -28.25563 -26.79453 -24.88359 -23.03658 -22.29327 -20.92121 -20.43151 -19.07484 -18.77491 -17.69732 -17.12882 -16.97019 -16.80890 -16.15297 -15.51726 -15.08409 -14.73067 -14.27420 -13.84243 -13.69805 -13.63610 -13.08520 -12.66656 -12.63630 -12.27413 -11.90206 -11.71041 -11.57652 -11.33363 -11.30163 -11.27403 -10.48736 -10.39627 -10.05960 -9.93421 -9.82156 -9.46175 -9.33919 -8.75375 -8.65328 -6.17226 -4.18082 -0.37430 0.58622 1.13288 1.21007 2.69655 2.88353 3.19844 3.26818 3.28471 3.48936 3.93828 4.10229 4.31421 4.35416 4.51065 4.57697 4.68613 4.88523 5.02146 5.08929 5.15412 5.27478 5.40376 5.59123 5.77824 5.92646 5.99851 6.09277 6.24728 6.45294 6.58175 7.02411 7.13348 7.46379 7.58913 7.70824 8.32636 8.39725 8.86771 9.42369 10.95819 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.002911 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.126766 B = 9614.793822 C = 9893.973769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.021 4.021 10 C 0.129 3.871 11 N -0.724 5.724 12 C 0.506 3.494 13 O -0.540 6.540 14 C -0.108 4.108 15 C -0.057 4.057 16 C -0.053 4.053 17 C -0.115 4.115 18 C -0.059 4.059 19 C -0.043 4.043 20 N 0.030 4.970 21 O -0.160 6.160 22 O -0.164 6.164 23 C -0.041 4.041 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.398 0.602 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.585 -9.196 3.076 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.007 3.993 11 N -0.374 5.374 12 C 0.290 3.710 13 O -0.418 6.418 14 C -0.147 4.147 15 C -0.058 4.058 16 C -0.071 4.071 17 C -0.134 4.134 18 C -0.078 4.078 19 C -0.126 4.126 20 N 0.549 4.451 21 O -0.376 6.376 22 O -0.379 6.379 23 C -0.060 4.060 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.231 0.769 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 21.824 -9.498 3.687 24.085 hybrid contribution 0.513 1.177 -0.376 1.338 sum 22.337 -8.322 3.311 24.065 Atomic orbital electron populations 1.69900 1.06319 1.27141 1.50171 1.25010 0.94774 0.99188 0.94306 0.86742 0.80198 0.83507 0.78541 1.20173 1.21231 1.19118 1.20906 0.88617 0.94925 1.51938 0.90644 1.19789 0.98073 0.91195 0.96849 1.21547 0.75719 1.00295 1.01723 1.46324 1.09358 1.07740 1.73951 1.20288 0.88937 0.84462 0.77273 1.90739 1.70170 1.31264 1.49595 1.20769 0.94056 0.93665 1.06257 1.19307 0.98444 0.96067 0.92001 1.21530 0.92763 0.94408 0.98410 1.21173 0.99808 0.94728 0.97677 1.21057 0.95719 1.01058 0.89957 1.21050 1.12849 0.94969 0.83722 1.43624 0.97765 1.00796 1.02912 1.94556 1.55241 1.68270 1.19530 1.94521 1.47154 1.02017 1.94248 1.20894 0.93236 0.91525 1.00380 0.92470 0.95988 0.96396 0.91859 0.91870 0.76898 0.87235 0.87070 0.83961 0.83429 0.83037 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 7 C -0.53 -14.36 9.66 -34.44 -0.33 -14.69 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.02 -0.46 4.15 -27.89 -0.12 -0.58 16 10 C 0.13 2.47 5.61 -4.04 -0.02 2.45 16 11 N -0.72 -10.34 5.56 -60.29 -0.33 -10.68 16 12 C 0.51 6.92 7.82 -10.98 -0.09 6.84 16 13 O -0.54 -9.86 16.03 5.55 0.09 -9.77 16 14 C -0.11 -0.89 5.83 -29.03 -0.17 -1.06 16 15 C -0.06 -0.53 4.37 -104.63 -0.46 -0.99 16 16 C -0.05 -0.41 9.70 -39.58 -0.38 -0.79 16 17 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 18 C -0.06 -0.51 9.56 -39.58 -0.38 -0.89 16 19 C -0.04 -0.48 6.85 -79.95 -0.55 -1.03 16 20 N 0.03 0.40 4.45 33.96 0.15 0.55 16 21 O -0.16 -2.29 18.45 -29.46 -0.54 -2.83 16 22 O -0.16 -2.22 18.45 -29.46 -0.54 -2.77 16 23 C -0.04 -0.44 9.21 -39.58 -0.36 -0.80 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 26 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.40 4.44 8.47 -40.82 -0.35 4.10 16 30 H 0.11 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.11 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.15 1.08 7.61 -52.49 -0.40 0.68 16 35 H 0.15 1.53 7.61 -52.49 -0.40 1.13 16 LS Contribution 316.75 15.07 4.77 4.77 Total: -1.00 -34.25 316.75 -7.69 -41.94 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.03 Total: 0.04 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.35 Total: -10.90 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.59 Total: -36.26 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.00 Total: -15.37 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.25 -7.69 -41.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273083925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.460 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds