Wall clock time and date at job start Mon Mar 30 2020 23:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 11 16 16 C 1.38258 * 119.99679 * 269.72403 * 15 14 12 17 17 C 1.38209 * 119.99862 * 179.79213 * 16 15 14 18 18 C 1.38259 * 119.99909 * 0.45975 * 17 16 15 19 19 C 1.38215 * 120.00269 * 359.77333 * 18 17 16 20 20 N 1.48016 * 120.00315 * 180.02562 * 19 18 17 21 21 O 1.21799 * 119.99994 * 180.02562 * 20 19 18 22 22 O 1.21797 * 120.00157 * 0.02562 * 20 19 18 23 23 C 1.38208 * 119.99888 * 90.00051 * 15 14 12 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 26 26 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 27 27 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 28 28 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 29 29 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 30 30 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 31 31 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 32 32 H 1.08000 * 119.99915 * 0.02562 * 16 15 14 33 33 H 1.08000 * 120.00068 * 180.25148 * 17 16 15 34 34 H 1.08002 * 120.00201 * 179.78895 * 18 17 16 35 35 H 1.08000 * 120.00305 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 7 5.4866 -2.6366 -0.0002 12 6 6.1605 -3.8038 -0.0016 13 8 5.5540 -4.8541 -0.0035 14 6 7.6675 -3.8038 0.0058 15 6 8.1697 -5.2246 0.0093 16 6 8.3996 -5.8736 1.2083 17 6 8.8561 -7.1781 1.2116 18 6 9.0920 -7.8309 0.0159 19 6 8.8668 -7.1806 -1.1827 20 7 9.1188 -7.8797 -2.4628 21 8 8.9207 -7.3064 -3.5191 22 8 9.5241 -9.0282 -2.4600 23 6 8.4060 -5.8770 -1.1860 24 1 -0.4849 0.8400 0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6796 -0.8895 27 1 3.6586 -3.1494 -0.8920 28 1 3.6579 -3.1514 0.8879 29 1 5.9715 -1.7965 0.0009 30 1 8.0352 -3.2906 -0.8827 31 1 8.0263 -3.2893 0.8972 32 1 8.2188 -5.3623 2.1423 33 1 9.0318 -7.6864 2.1482 34 1 9.4520 -8.8491 0.0184 35 1 8.2303 -5.3687 -2.1225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273083925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:32 Heat of formation + Delta-G solvation = -49.674342 kcal Electronic energy + Delta-G solvation = -20146.814719 eV Core-core repulsion = 16725.783331 eV Total energy + Delta-G solvation = -3421.031388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.29983 -41.18154 -39.95887 -37.73765 -36.66164 -34.80682 -34.32543 -32.85634 -32.09797 -29.21627 -27.66262 -26.55450 -23.75961 -23.25297 -22.57329 -21.54059 -19.96510 -19.73591 -19.01373 -18.66815 -18.05093 -17.54974 -16.96760 -16.72462 -16.24938 -16.21419 -15.40332 -15.00870 -14.96681 -14.56517 -14.47640 -13.89163 -13.35390 -13.30813 -13.14028 -12.89302 -12.80670 -12.49952 -12.36668 -12.26086 -12.17387 -12.15106 -11.75622 -11.52828 -11.03364 -10.79540 -10.54579 -10.17069 -10.05339 -8.30700 -6.38556 -1.25194 -0.06742 0.29209 0.36060 1.39579 1.42372 1.53480 1.64650 2.10535 2.36801 2.51719 3.04756 3.24557 3.47530 3.72392 3.91155 3.92605 3.96454 4.11197 4.37424 4.40203 4.46939 4.51681 4.72451 4.74887 4.76623 4.98382 5.08747 5.16010 5.20527 5.40897 5.43448 5.52022 5.64462 6.21239 6.42955 6.61593 6.70970 7.26300 7.30448 8.86335 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.002911 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.126766 B = 9614.793822 C = 9893.973769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.231 1.231 7 C -0.542 4.542 8 H 0.025 0.975 9 C -0.012 4.012 10 C 0.144 3.856 11 N -0.714 5.714 12 C 0.504 3.496 13 O -0.591 6.591 14 C -0.093 4.093 15 C -0.070 4.070 16 C -0.047 4.047 17 C -0.107 4.107 18 C -0.061 4.061 19 C -0.068 4.068 20 N 0.031 4.969 21 O -0.200 6.200 22 O -0.169 6.169 23 C -0.056 4.056 24 H 0.268 0.732 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.418 0.582 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.185 0.815 34 H 0.165 0.835 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.766 -7.539 5.015 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.154 1.154 7 C -0.580 4.580 8 H 0.044 0.956 9 C -0.050 4.050 10 C 0.020 3.980 11 N -0.366 5.366 12 C 0.292 3.708 13 O -0.472 6.472 14 C -0.132 4.132 15 C -0.071 4.071 16 C -0.065 4.065 17 C -0.125 4.125 18 C -0.080 4.080 19 C -0.151 4.151 20 N 0.545 4.455 21 O -0.408 6.408 22 O -0.386 6.386 23 C -0.076 4.076 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.255 0.745 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.202 0.798 34 H 0.183 0.817 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 25.052 -7.810 5.577 26.827 hybrid contribution -0.542 0.522 -0.876 1.155 sum 24.510 -7.288 4.701 25.999 Atomic orbital electron populations 1.70086 1.08745 1.28476 1.51998 1.26140 0.95696 1.04075 0.93631 0.85507 0.79808 0.77042 0.79295 1.19155 1.21463 1.15366 1.21296 0.91893 0.93226 1.51605 0.95641 1.19646 0.94145 0.92996 0.98224 1.20983 0.79039 0.98279 0.99686 1.46042 1.07094 1.09367 1.74106 1.21251 0.91221 0.83069 0.75251 1.90728 1.71807 1.33041 1.51623 1.20809 0.88998 0.93821 1.09611 1.19528 0.98824 0.96784 0.91995 1.22014 0.90874 0.94668 0.98969 1.21639 0.98097 0.94549 0.98232 1.21410 0.95129 1.01757 0.89664 1.21309 1.15110 0.95624 0.83049 1.43998 0.97144 1.00714 1.03652 1.94540 1.56980 1.68493 1.20808 1.94480 1.47029 1.02558 1.94512 1.21031 0.93892 0.91573 1.01072 0.92349 0.94077 0.94613 0.94417 0.93823 0.74533 0.84628 0.82801 0.80953 0.79751 0.81746 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 2 C 0.00 0.08 5.47 84.66 0.46 0.55 16 3 Si 0.96 40.93 27.47 68.60 1.88 42.81 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.23 -8.46 6.54 99.48 0.65 -7.81 16 7 C -0.54 -30.27 9.66 25.60 0.25 -30.03 16 8 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 9 C -0.01 -0.52 4.15 29.85 0.12 -0.39 16 10 C 0.14 5.48 5.61 86.38 0.48 5.97 16 11 N -0.71 -18.58 5.56 -463.06 -2.57 -21.15 16 12 C 0.50 12.63 7.82 87.66 0.69 13.31 16 13 O -0.59 -21.23 16.03 -3.04 -0.05 -21.28 16 14 C -0.09 -1.15 5.83 29.10 0.17 -0.98 16 15 C -0.07 -1.10 4.37 -19.87 -0.09 -1.19 16 16 C -0.05 -0.54 9.70 22.27 0.22 -0.32 16 17 C -0.11 -1.10 10.05 22.27 0.22 -0.88 16 18 C -0.06 -0.94 9.56 22.27 0.21 -0.73 16 19 C -0.07 -1.49 6.85 36.38 0.25 -1.24 16 20 N 0.03 0.86 4.45 -46.46 -0.21 0.65 16 21 O -0.20 -6.07 18.45 18.89 0.35 -5.72 16 22 O -0.17 -4.65 18.45 18.89 0.35 -4.30 16 23 C -0.06 -1.15 9.21 22.27 0.21 -0.94 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 26 H 0.04 1.39 7.57 -2.38 -0.02 1.37 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.42 7.54 8.47 -92.71 -0.79 6.75 16 30 H 0.14 1.05 8.09 -2.38 -0.02 1.03 16 31 H 0.15 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.17 2.03 7.61 -2.91 -0.02 2.01 16 35 H 0.15 2.98 7.61 -2.91 -0.02 2.96 16 Total: -1.00 -80.37 316.75 3.53 -76.85 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.28 Total: 7.65 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 3.19 Total: -16.88 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.48 Total: -79.12 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: 0.65 Total: -31.31 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.88 Total: 42.81 kcal Total: -80.37 3.53 -76.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273083925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.172 kcal (2) G-P(sol) polarization free energy of solvation -80.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds