Wall clock time and date at job start Mon Mar 30 2020 23:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00213 * 2 1 4 4 H 1.48498 * 109.47163 * 274.98958 * 3 2 1 5 5 H 1.48507 * 109.47205 * 34.98762 * 3 2 1 6 6 H 1.48502 * 109.47408 * 154.98561 * 3 2 1 7 7 C 1.40051 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00123 * 186.14348 * 7 2 1 9 9 C 1.46377 * 119.99553 * 6.14235 * 7 2 1 10 10 O 1.21690 * 120.00548 * 353.94546 * 9 7 2 11 11 N 1.34780 * 119.99358 * 173.94115 * 9 7 2 12 12 C 1.46507 * 119.99777 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47343 * 180.02562 * 12 11 9 14 14 N 1.46493 * 109.46953 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99538 * 180.02562 * 14 13 12 16 16 O 1.21585 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.47599 * 119.99753 * 179.97438 * 15 14 13 18 18 C 1.39739 * 120.08607 * 179.97438 * 17 15 14 19 19 C 1.37704 * 119.90760 * 180.02562 * 18 17 15 20 20 C 1.38997 * 120.09012 * 0.02562 * 19 18 17 21 21 O 1.35712 * 119.91085 * 179.97438 * 20 19 18 22 22 C 1.38995 * 120.17553 * 0.24682 * 20 19 18 23 23 C 1.37696 * 120.09061 * 359.45567 * 22 20 19 24 24 H 0.97005 * 119.99669 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00419 * 359.97438 * 11 9 7 26 26 H 1.09007 * 109.47069 * 59.99653 * 12 11 9 27 27 H 1.09005 * 109.46882 * 300.00490 * 12 11 9 28 28 H 1.09002 * 109.46977 * 59.99911 * 13 12 11 29 29 H 1.09000 * 109.46832 * 300.00396 * 13 12 11 30 30 H 0.96996 * 120.00195 * 359.97438 * 14 13 12 31 31 H 1.07991 * 120.04528 * 359.97438 * 18 17 15 32 32 H 1.08001 * 119.95195 * 179.97438 * 19 18 17 33 33 H 0.96700 * 114.00043 * 89.99131 * 21 20 19 34 34 H 1.08006 * 119.95081 * 179.72663 * 22 20 19 35 35 H 1.08000 * 120.04626 * 180.27859 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5871 1.4120 0.5920 7 6 2.0070 -1.2129 -0.0005 8 1 3.0822 -1.2156 0.0995 9 6 1.2813 -2.4768 -0.1368 10 8 0.0644 -2.4827 -0.1387 11 7 1.9611 -3.6341 -0.2601 12 6 1.2348 -4.8991 -0.3970 13 6 2.2348 -6.0507 -0.5187 14 7 1.5086 -7.3155 -0.6562 15 6 2.1883 -8.4729 -0.7786 16 8 3.4041 -8.4672 -0.7754 17 6 1.4566 -9.7473 -0.9166 18 6 2.1594 -10.9483 -1.0442 19 6 1.4731 -12.1352 -1.1732 20 6 0.0831 -12.1395 -1.1772 21 8 -0.5896 -13.3112 -1.3051 22 6 -0.6196 -10.9464 -1.0562 23 6 0.0592 -9.7561 -0.9206 24 1 -0.4850 0.8401 0.0004 25 1 2.9310 -3.6294 -0.2590 26 1 0.6096 -4.8644 -1.2893 27 1 0.6072 -5.0545 0.4805 28 1 2.8596 -6.0852 0.3738 29 1 2.8628 -5.8954 -1.3960 30 1 0.5386 -7.3201 -0.6583 31 1 3.2393 -10.9457 -1.0424 32 1 2.0156 -13.0638 -1.2723 33 1 -0.7867 -13.7454 -0.4638 34 1 -1.6996 -10.9535 -1.0641 35 1 -0.4875 -8.8299 -0.8221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274261815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:03 Heat of formation + Delta-G solvation = -94.875973 kcal Electronic energy + Delta-G solvation = -19828.740396 eV Core-core repulsion = 16405.748918 eV Total energy + Delta-G solvation = -3422.991478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53947 -39.25150 -37.46485 -36.80509 -35.30918 -33.15139 -32.31242 -31.41788 -30.58863 -28.38692 -26.06488 -23.93405 -23.15898 -22.14425 -20.82986 -19.68103 -18.91723 -18.14633 -17.20695 -16.44047 -15.86302 -15.60659 -15.46225 -15.28436 -14.99361 -14.26401 -14.22310 -14.09913 -13.92355 -13.56888 -12.90773 -12.61496 -12.44663 -12.36308 -12.27444 -11.34315 -11.26898 -11.15911 -10.89533 -10.87891 -10.49629 -10.25648 -10.11119 -9.47261 -9.24039 -8.96663 -8.88102 -7.69676 -7.62319 -6.24095 -4.67994 0.39913 0.93538 2.56512 2.98980 3.12573 3.20131 3.23790 3.45583 3.74266 4.08960 4.40574 4.49855 4.53563 4.54646 4.86235 4.93119 5.06018 5.19059 5.29957 5.36704 5.56787 5.71739 5.75723 5.79891 5.93774 5.97109 6.20135 6.28994 6.36788 6.44178 7.16714 7.37839 7.40586 7.85159 7.99010 8.08357 8.28055 8.98705 9.44797 10.54212 10.72094 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.048784 B = 0.002520 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.817866 B =11109.929698 C =11656.164895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.765 5.765 12 C 0.123 3.877 13 C 0.110 3.890 14 N -0.718 5.718 15 C 0.558 3.442 16 O -0.538 6.538 17 C -0.142 4.142 18 C -0.043 4.043 19 C -0.155 4.155 20 C 0.129 3.871 21 O -0.499 6.499 22 C -0.152 4.152 23 C -0.068 4.068 24 H 0.269 0.731 25 H 0.383 0.617 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.402 0.598 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.395 0.605 34 H 0.136 0.864 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -22.465 -0.731 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.088 0.912 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.422 5.422 12 C -0.003 4.003 13 C -0.014 4.014 14 N -0.370 5.370 15 C 0.345 3.655 16 O -0.416 6.416 17 C -0.145 4.145 18 C -0.062 4.062 19 C -0.174 4.174 20 C 0.084 3.916 21 O -0.310 6.310 22 C -0.171 4.171 23 C -0.087 4.087 24 H 0.079 0.921 25 H 0.215 0.785 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.252 0.748 34 H 0.154 0.846 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.335 -22.199 -1.316 22.241 hybrid contribution 0.297 0.629 0.450 0.829 sum 0.632 -21.570 -0.866 21.597 Atomic orbital electron populations 1.70027 1.07117 1.27355 1.35144 1.25718 0.94626 1.00385 0.92555 0.86332 0.80234 0.81333 0.78708 1.19771 1.20444 1.18833 1.20876 0.94193 0.89427 1.53667 0.91227 1.18245 0.87140 0.82243 0.76427 1.90598 1.14084 1.86310 1.55399 1.46035 1.08778 1.05200 1.82157 1.20955 0.94000 0.84221 1.01144 1.21602 0.95257 0.81911 1.02648 1.45808 1.10646 1.06508 1.74087 1.18139 0.87197 0.83535 0.76663 1.90788 1.13330 1.87189 1.50337 1.20032 0.93688 0.93986 1.06772 1.21179 1.01016 0.90254 0.93729 1.21427 0.93499 0.99105 1.03322 1.18741 0.90038 0.85720 0.97118 1.84761 1.76675 1.34411 1.35149 1.21382 1.00981 0.91874 1.02857 1.21268 0.92964 0.98390 0.96056 0.92062 0.78514 0.92745 0.92763 0.90861 0.90859 0.76285 0.84058 0.84659 0.74838 0.84595 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.83 11.85 55.55 0.66 -22.17 16 2 C 0.09 2.41 5.49 -17.37 -0.10 2.31 16 3 Si 0.91 19.97 29.56 -169.99 -5.03 14.95 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -15.22 9.53 -35.63 -0.34 -15.56 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.56 15.57 7.74 -12.98 -0.10 15.47 16 10 O -0.58 -18.53 15.05 5.20 0.08 -18.45 16 11 N -0.76 -16.61 5.55 -61.71 -0.34 -16.95 16 12 C 0.12 2.19 5.79 -4.04 -0.02 2.17 16 13 C 0.11 1.58 5.79 -4.04 -0.02 1.56 16 14 N -0.72 -8.90 5.51 -61.33 -0.34 -9.24 16 15 C 0.56 7.48 7.76 -12.44 -0.10 7.38 16 16 O -0.54 -9.02 16.34 5.29 0.09 -8.94 16 17 C -0.14 -1.53 5.88 -104.96 -0.62 -2.14 16 18 C -0.04 -0.42 9.59 -39.22 -0.38 -0.80 16 19 C -0.16 -1.27 9.97 -39.50 -0.39 -1.67 16 20 C 0.13 1.04 6.71 -39.02 -0.26 0.78 16 21 O -0.50 -3.39 13.49 -18.84 -0.25 -3.65 16 22 C -0.15 -1.20 9.97 -39.50 -0.39 -1.60 16 23 C -0.07 -0.59 9.53 -39.22 -0.37 -0.96 16 24 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 25 H 0.38 7.30 8.45 -40.82 -0.35 6.96 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.40 4.01 6.49 -40.82 -0.27 3.75 16 31 H 0.14 1.38 7.64 -52.49 -0.40 0.98 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.39 0.74 9.06 45.56 0.41 1.15 16 34 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.13 0.90 6.39 -52.49 -0.34 0.57 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -37.56 315.29 -6.50 -44.05 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.02 Total: 8.70 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -3.09 Total: 6.94 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.02 Total: -48.36 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.09 Total: -31.03 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.56 -6.50 -44.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274261815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.824 kcal (2) G-P(sol) polarization free energy of solvation -37.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds